Wall clock time and date at job start Tue Mar 31 2020 22:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46900 * 2 1 4 4 O 1.33492 * 126.82436 * 269.96646 * 3 2 1 5 5 N 1.20657 * 113.15656 * 180.02562 * 4 3 2 6 6 C 1.30022 * 112.30107 * 359.72118 * 5 4 3 7 7 C 1.37357 * 126.83252 * 89.99981 * 3 2 1 8 8 C 1.47402 * 128.56302 * 359.95431 * 7 3 2 9 9 O 1.21609 * 120.00016 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99658 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99669 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47051 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46505 * 64.99900 * 12 11 10 14 14 C 1.52997 * 109.47127 * 185.00029 * 12 11 10 15 15 N 1.46894 * 109.47224 * 305.00575 * 12 11 10 16 16 C 1.46902 * 110.99790 * 298.94884 * 15 12 11 17 17 C 1.46896 * 111.00342 * 175.00014 * 15 12 11 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 12 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47170 * 90.00302 * 25 23 21 27 27 H 1.48502 * 109.47482 * 210.00611 * 25 23 21 28 28 H 1.48509 * 109.47017 * 330.00300 * 25 23 21 29 29 H 1.09004 * 109.47062 * 60.00580 * 1 2 3 30 30 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47416 * 300.00305 * 1 2 3 32 32 H 1.08996 * 109.47224 * 239.99320 * 2 1 3 33 33 H 1.09004 * 109.47062 * 119.99420 * 2 1 3 34 34 H 1.07994 * 127.33673 * 180.29970 * 6 5 4 35 35 H 0.96996 * 120.00429 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46773 * 60.00404 * 11 10 8 37 37 H 1.09000 * 109.47434 * 300.00313 * 11 10 8 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 12 11 40 40 H 1.09004 * 109.47261 * 300.00303 * 14 12 11 41 41 H 1.09003 * 109.46808 * 60.00632 * 16 15 12 42 42 H 1.09004 * 109.47176 * 180.02562 * 16 15 12 43 43 H 1.08994 * 109.47263 * 300.00333 * 16 15 12 44 44 H 1.09006 * 109.46837 * 310.00141 * 17 15 12 45 45 H 1.09003 * 109.47200 * 69.99229 * 17 15 12 46 46 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 47 47 H 0.96997 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2995 2.1750 -1.0686 5 7 2.6906 3.2802 -0.7835 6 6 2.7498 3.4663 0.5020 7 6 2.3067 2.1972 1.0994 8 6 2.1819 1.8471 2.5258 9 8 1.7907 0.7418 2.8486 10 7 2.5014 2.7519 3.4721 11 6 2.3769 2.4041 4.8898 12 6 2.7998 3.5989 5.7471 13 1 2.1039 4.4230 5.5901 14 6 2.7893 3.1966 7.2232 15 7 4.1536 4.0215 5.3643 16 6 5.1246 2.9417 5.5862 17 6 4.5479 5.2400 6.0836 18 6 5.8254 5.7801 5.4945 19 8 6.3556 5.2061 4.5668 20 7 6.3795 6.9004 5.9989 21 6 7.5419 7.3914 5.4633 22 1 8.0141 6.8803 4.6372 23 6 8.1128 8.5467 5.9831 24 7 7.5387 9.1683 6.9885 25 14 9.6972 9.2154 5.2537 26 1 9.3756 10.1650 4.1581 27 1 10.4693 9.9198 6.3086 28 1 10.5062 8.0929 4.7143 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0601 4.3613 1.0207 35 1 2.8131 3.6336 3.2146 36 1 3.0192 1.5522 5.1126 37 1 1.3412 2.1461 5.1111 38 1 3.0901 4.0478 7.8339 39 1 3.4852 2.3724 7.3801 40 1 1.7847 2.8830 7.5072 41 1 4.8467 2.0745 4.9872 42 1 6.1186 3.2814 5.2951 43 1 5.1290 2.6682 6.6413 44 1 3.7602 5.9878 5.9906 45 1 4.7039 5.0058 7.1367 46 1 5.9556 7.3593 6.7411 47 1 7.9374 9.9746 7.3516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700474994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:10 Heat of formation + Delta-G solvation = -30.625749 kcal Electronic energy + Delta-G solvation = -29519.068957 eV Core-core repulsion = 25318.549801 eV Total energy + Delta-G solvation = -4200.519156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.98108 -40.92447 -40.26787 -38.73982 -36.01594 -35.72028 -35.28467 -34.58814 -33.24700 -32.11220 -31.23023 -29.35700 -27.82721 -27.00097 -25.74148 -25.06218 -24.90616 -22.50515 -21.54206 -21.10737 -20.58242 -19.78506 -18.97831 -18.75698 -17.99990 -17.44755 -17.08833 -16.95637 -16.56223 -16.25571 -15.92808 -15.82987 -15.66203 -15.38562 -15.06398 -14.86385 -14.52932 -14.46112 -14.15979 -13.86375 -13.63405 -13.52809 -13.42914 -13.09320 -12.92424 -12.84185 -12.74059 -12.46687 -12.42778 -12.36488 -12.24997 -12.12723 -11.86145 -11.74146 -11.47077 -11.42364 -11.17735 -10.56549 -10.24313 -10.00133 -9.96561 -9.16555 -8.44831 -5.92322 0.02014 0.74622 1.37776 1.41762 1.53447 1.74906 2.10490 2.14217 2.24124 2.29498 2.77861 3.22930 3.24407 3.28441 3.47665 3.58137 3.75165 3.99335 4.09924 4.20479 4.28162 4.28440 4.32671 4.37459 4.39576 4.56106 4.60103 4.65620 4.68947 4.72991 4.78902 4.85507 4.87907 4.99179 5.04138 5.12231 5.22174 5.30306 5.33300 5.43172 5.45007 5.89629 6.08271 6.21856 6.50797 6.64011 7.11360 7.15712 7.16553 7.61356 8.17479 8.72515 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002548 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.575976 B =10988.304963 C =12616.892521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.056 3.944 4 O 0.088 5.912 5 N -0.378 5.378 6 C 0.030 3.970 7 C -0.280 4.280 8 C 0.597 3.403 9 O -0.565 6.565 10 N -0.700 5.700 11 C 0.135 3.865 12 C 0.069 3.931 13 H 0.106 0.894 14 C -0.182 4.182 15 N -0.522 5.522 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.413 0.587 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.395 0.605 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 -14.845 -4.976 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.009 4.009 4 O 0.031 5.969 5 N -0.085 5.085 6 C -0.153 4.153 7 C -0.287 4.287 8 C 0.384 3.616 9 O -0.446 6.446 10 N -0.350 5.350 11 C 0.011 3.989 12 C -0.039 4.039 13 H 0.124 0.876 14 C -0.241 4.241 15 N -0.246 5.246 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.233 0.767 35 H 0.250 0.750 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.240 -14.971 -6.822 23.117 hybrid contribution 1.100 1.031 1.679 2.256 sum -15.141 -13.940 -5.143 21.213 Atomic orbital electron populations 1.21688 0.91964 1.04068 1.02015 1.20523 0.97821 0.83960 1.06279 1.25416 0.93948 0.96799 0.84735 1.84561 1.61235 1.17552 1.33584 1.73660 1.17520 0.99076 1.18240 1.26768 0.99372 0.99879 0.89247 1.22130 1.15305 0.95829 0.95438 1.16832 0.77084 0.84147 0.83500 1.90746 1.48925 1.22267 1.82680 1.45653 1.66000 1.17217 1.06128 1.21482 1.01826 0.96870 0.78734 1.22113 0.90063 0.97738 0.93995 0.87623 1.22365 1.03925 1.02386 0.95447 1.61747 1.02174 1.03668 1.57023 1.22396 0.96734 0.93926 0.99167 1.21736 0.95276 0.93911 0.96357 1.20830 0.88211 0.82226 0.85714 1.90477 1.66142 1.60797 1.32446 1.41943 1.23084 1.23883 1.32553 1.19597 1.01535 1.08434 1.16129 0.90460 1.25960 1.02334 0.96405 0.96600 1.69659 1.41553 1.19826 1.25165 0.84999 0.77641 0.78169 0.77976 1.19774 1.19707 1.19951 0.91674 0.89081 0.93593 0.86698 0.87799 0.76683 0.75014 0.92020 0.89496 0.91668 0.92293 0.89678 0.91430 0.92884 0.94573 0.86909 0.91335 0.77086 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.05 -0.72 6.05 29.85 0.18 -0.54 16 3 C 0.06 1.17 6.80 25.48 0.17 1.35 16 4 O 0.09 2.05 11.06 77.00 0.85 2.90 16 5 N -0.38 -9.78 12.01 -54.18 -0.65 -10.43 16 6 C 0.03 0.70 11.95 87.29 1.04 1.75 16 7 C -0.28 -6.59 6.47 -18.74 -0.12 -6.71 16 8 C 0.60 14.83 7.81 86.66 0.68 15.51 16 9 O -0.56 -15.99 15.24 -4.06 -0.06 -16.05 16 10 N -0.70 -15.36 5.38 -466.38 -2.51 -17.87 16 11 C 0.13 2.60 4.69 86.38 0.40 3.01 16 12 C 0.07 1.29 2.50 44.92 0.11 1.40 16 13 H 0.11 1.69 8.03 -2.39 -0.02 1.67 16 14 C -0.18 -2.86 8.50 71.98 0.61 -2.24 16 15 N -0.52 -14.05 3.93 -901.63 -3.54 -17.60 16 16 C 0.03 0.76 8.45 127.69 1.08 1.84 16 17 C 0.06 1.76 4.89 85.56 0.42 2.18 16 18 C 0.44 19.65 7.47 87.66 0.66 20.30 16 19 O -0.61 -31.83 13.91 -3.05 -0.04 -31.87 16 20 N -0.58 -28.35 5.29 -306.99 -1.62 -29.98 16 21 C -0.33 -18.12 9.68 84.04 0.81 -17.31 16 22 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 25 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.84 6.78 -2.38 -0.02 1.82 16 34 H 0.22 4.22 7.88 -2.91 -0.02 4.20 16 35 H 0.41 9.00 7.50 -92.71 -0.70 8.30 16 36 H 0.06 1.33 6.70 -2.39 -0.02 1.32 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.06 6.75 -2.39 -0.02 1.05 16 39 H 0.06 1.00 6.39 -2.39 -0.02 0.99 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.07 1.87 6.44 -2.39 -0.02 1.85 16 42 H 0.05 2.04 5.82 -2.38 -0.01 2.03 16 43 H 0.04 0.93 6.28 -2.39 -0.02 0.92 16 44 H 0.11 2.90 8.00 -2.38 -0.02 2.88 16 45 H 0.07 1.88 6.94 -2.39 -0.02 1.86 16 46 H 0.40 18.47 7.90 -92.70 -0.73 17.74 16 47 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -69.59 387.14 1.56 -68.04 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.40 Total: 37.61 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 7.23 Total: 19.20 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -8.05 Total: -124.47 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: 0.75 Total: -45.02 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -69.59 1.56 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.409 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds