Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46533 * 2 1 4 4 O 1.34256 * 126.52241 * 270.01632 * 3 2 1 5 5 C 1.34047 * 108.22452 * 180.02562 * 4 3 2 6 6 N 1.29930 * 109.24449 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.48020 * 359.73411 * 6 5 4 8 8 C 1.47420 * 126.45481 * 180.30392 * 7 6 5 9 9 O 1.21614 * 120.00008 * 175.17662 * 8 7 6 10 10 N 1.34781 * 119.99844 * 355.17728 * 8 7 6 11 11 C 1.46497 * 119.99723 * 2.54206 * 10 8 7 12 12 C 1.46496 * 119.99622 * 182.54304 * 10 8 7 13 13 C 1.53001 * 109.47153 * 90.00181 * 12 10 8 14 14 H 1.08992 * 109.47289 * 294.99781 * 13 12 10 15 15 C 1.53001 * 109.47215 * 174.99422 * 13 12 10 16 16 N 1.46901 * 109.47110 * 54.99800 * 13 12 10 17 17 C 1.46902 * 111.00131 * 205.00107 * 16 13 12 18 18 C 1.50697 * 109.47083 * 179.97438 * 17 16 13 19 19 O 1.21286 * 120.00262 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99686 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99971 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00006 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99886 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00523 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99957 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46893 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47194 * 119.99525 * 25 23 21 28 28 H 1.48497 * 109.46899 * 239.99882 * 25 23 21 29 29 H 1.08999 * 109.47540 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47198 * 59.99990 * 1 2 3 31 31 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46925 * 240.00245 * 2 1 3 33 33 H 1.08993 * 109.46796 * 119.99320 * 2 1 3 34 34 H 1.07998 * 125.38084 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47062 * 83.87995 * 11 10 8 36 36 H 1.08997 * 109.46666 * 203.87080 * 11 10 8 37 37 H 1.09003 * 109.47334 * 323.87771 * 11 10 8 38 38 H 1.09002 * 109.46516 * 210.00004 * 12 10 8 39 39 H 1.08990 * 109.47518 * 330.00092 * 12 10 8 40 40 H 1.08999 * 109.47021 * 300.00141 * 15 13 12 41 41 H 1.09004 * 109.46996 * 60.00123 * 15 13 12 42 42 H 1.08998 * 109.47358 * 179.97438 * 15 13 12 43 43 H 1.00897 * 111.00233 * 81.04469 * 16 13 12 44 44 H 1.09001 * 109.46825 * 300.00245 * 17 16 13 45 45 H 1.09003 * 109.46900 * 59.99952 * 17 16 13 46 46 H 0.97001 * 120.00234 * 0.02562 * 20 18 17 47 47 H 0.96996 * 120.00447 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2982 2.1744 -1.0789 5 6 2.7229 3.3741 -0.6581 6 7 2.7313 3.3939 0.6411 7 6 2.2982 2.1860 1.0936 8 6 2.1476 1.7814 2.5032 9 8 1.6660 0.6987 2.7769 10 7 2.5438 2.6113 3.4885 11 6 3.0723 3.9377 3.1607 12 6 2.4458 2.1869 4.8872 13 6 3.7437 1.4904 5.3009 14 1 3.8610 0.5706 4.7281 15 6 3.6910 1.1584 6.7936 16 7 4.8825 2.3801 5.0372 17 6 6.1187 1.6101 4.8452 18 6 7.2621 2.5544 4.5769 19 8 7.0666 3.7510 4.5489 20 7 8.5022 2.0691 4.3691 21 6 9.5424 2.9281 4.1245 22 1 9.3679 3.9936 4.0979 23 6 10.8207 2.4278 3.9098 24 7 11.0330 1.1313 3.9417 25 14 12.2381 3.5983 3.5773 26 1 11.7395 4.9970 3.5945 27 1 13.2760 3.4294 4.6258 28 1 12.8254 3.2989 2.2466 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.0125 4.1947 -1.2978 35 1 2.2454 4.6348 3.0246 36 1 3.7105 4.2854 3.9730 37 1 3.6540 3.8799 2.2406 38 1 2.2834 3.0588 5.5209 39 1 1.6107 1.4955 4.9995 40 1 3.5738 2.0783 7.3664 41 1 2.8460 0.4983 6.9894 42 1 4.6155 0.6618 7.0883 43 1 4.9901 3.0585 5.7762 44 1 6.3289 1.0304 5.7440 45 1 5.9986 0.9354 3.9975 46 1 8.6587 1.1121 4.3919 47 1 11.9254 0.7821 3.7922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700743354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = -64.006525 kcal Electronic energy + Delta-G solvation = -30034.332199 eV Core-core repulsion = 25832.365544 eV Total energy + Delta-G solvation = -4201.966655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.43601 -40.83350 -40.12948 -38.10108 -36.35302 -35.94478 -35.46600 -34.99608 -33.29114 -32.14239 -30.30692 -28.31884 -27.96744 -27.22105 -25.78535 -24.96617 -24.25691 -22.72353 -21.81761 -21.13507 -20.58819 -19.91703 -18.56333 -17.86998 -17.82795 -17.39246 -17.14855 -16.73758 -16.41816 -16.23990 -16.02647 -15.90927 -15.61624 -15.32696 -15.07714 -14.57758 -14.54091 -14.43377 -13.91372 -13.66838 -13.58409 -13.56099 -13.41888 -13.34139 -13.10721 -12.88829 -12.82092 -12.61949 -12.48676 -12.39926 -12.32392 -12.11274 -12.07102 -11.94819 -11.51311 -11.41671 -10.93981 -10.36761 -10.03083 -10.01688 -9.62010 -9.12818 -8.47049 -5.95843 0.08068 1.09807 1.35952 1.40980 1.55480 1.60216 2.04505 2.05500 2.27489 2.29912 2.91113 3.12840 3.20053 3.53757 3.57643 3.68655 3.93330 4.08811 4.13204 4.24860 4.28556 4.32041 4.33290 4.42350 4.53226 4.55101 4.59853 4.63640 4.75226 4.80535 4.88135 4.92622 4.94749 4.98368 5.05114 5.13793 5.23426 5.26808 5.40536 5.49466 5.66845 5.87659 6.08161 6.34592 6.46824 6.54177 6.59048 7.11435 7.12011 7.55395 8.10093 8.70799 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.002989 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.864386 B = 9364.588621 C =10639.376013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C 0.039 3.961 4 O -0.199 6.199 5 C 0.185 3.815 6 N -0.486 5.486 7 C -0.098 4.098 8 C 0.589 3.411 9 O -0.564 6.564 10 N -0.578 5.578 11 C 0.097 3.903 12 C 0.129 3.871 13 C 0.071 3.929 14 H 0.064 0.936 15 C -0.172 4.172 16 N -0.664 5.664 17 C 0.070 3.930 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.299 0.701 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.347 0.653 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 -1.729 -5.670 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C -0.018 4.018 4 O -0.086 6.086 5 C -0.043 4.043 6 N -0.215 5.215 7 C -0.217 4.217 8 C 0.377 3.623 9 O -0.445 6.445 10 N -0.306 5.306 11 C -0.046 4.046 12 C 0.006 3.994 13 C -0.040 4.040 14 H 0.082 0.918 15 C -0.231 4.231 16 N -0.296 5.296 17 C -0.063 4.063 18 C 0.230 3.770 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.314 0.686 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.166 0.834 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.115 -1.003 -5.849 21.933 hybrid contribution 1.311 -0.580 0.349 1.475 sum -19.804 -1.583 -5.500 20.614 Atomic orbital electron populations 1.21644 0.92042 1.03771 1.01789 1.20405 0.97852 0.84400 1.05458 1.24101 0.98191 0.96247 0.83247 1.84386 1.63739 1.24591 1.35844 1.29233 0.96479 0.87182 0.91370 1.70970 1.18085 1.21322 1.11081 1.21518 1.11866 0.92661 0.95635 1.17036 0.78050 0.83754 0.83452 1.90713 1.47636 1.22519 1.83608 1.47447 1.60440 1.16675 1.06038 1.21973 0.98259 0.81332 1.02994 1.21660 0.96597 1.00675 0.80456 1.22007 0.90832 0.95088 0.96083 0.91773 1.22361 1.02902 1.02946 0.94936 1.60150 1.01863 1.16329 1.51305 1.21447 0.88838 0.94428 1.01539 1.20745 0.84273 0.89603 0.82426 1.90479 1.84368 1.17731 1.57499 1.41956 1.06745 1.09565 1.63044 1.19701 0.87681 0.91398 1.47167 0.90177 1.26061 1.00674 0.98083 0.96624 1.69687 1.24108 1.12658 1.49952 0.84866 0.77305 0.77909 0.78233 1.19602 1.19589 1.19705 0.93712 0.91793 0.89373 0.87729 0.88337 0.68612 0.92988 0.91018 0.90069 0.88571 0.89068 0.91111 0.90278 0.92808 0.83371 0.91855 0.89824 0.77258 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.49 16 2 C -0.04 -0.85 5.87 29.85 0.18 -0.68 16 3 C 0.04 0.95 6.69 25.19 0.17 1.12 16 4 O -0.20 -4.13 10.73 0.42 0.00 -4.12 16 5 C 0.19 3.42 13.19 130.52 1.72 5.14 16 6 N -0.49 -12.78 7.85 -305.16 -2.40 -15.18 16 7 C -0.10 -2.82 6.67 40.41 0.27 -2.55 16 8 C 0.59 18.13 7.67 86.66 0.66 18.80 16 9 O -0.56 -18.25 14.43 -4.07 -0.06 -18.31 16 10 N -0.58 -16.37 2.73 -850.68 -2.32 -18.70 16 11 C 0.10 2.79 9.12 127.77 1.16 3.96 16 12 C 0.13 3.04 5.14 86.38 0.44 3.48 16 13 C 0.07 1.77 2.89 44.92 0.13 1.90 16 14 H 0.06 1.84 7.80 -2.39 -0.02 1.82 16 15 C -0.17 -3.35 9.16 71.98 0.66 -2.69 16 16 N -0.66 -20.85 4.25 -495.58 -2.11 -22.96 16 17 C 0.07 2.52 5.97 85.56 0.51 3.03 16 18 C 0.44 21.28 7.82 87.66 0.69 21.97 16 19 O -0.61 -33.64 15.78 -3.05 -0.05 -33.69 16 20 N -0.58 -30.11 5.29 -306.99 -1.62 -31.73 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 2.27 6.61 -2.39 -0.02 2.25 16 34 H 0.30 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 2.18 7.09 -2.39 -0.02 2.17 16 37 H 0.08 2.67 5.33 -2.39 -0.01 2.66 16 38 H 0.10 1.90 8.07 -2.39 -0.02 1.88 16 39 H 0.09 2.07 7.39 -2.39 -0.02 2.06 16 40 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.12 7.45 -2.39 -0.02 1.10 16 43 H 0.35 11.01 8.17 -89.70 -0.73 10.27 16 44 H 0.06 2.03 7.44 -2.39 -0.02 2.01 16 45 H 0.08 3.00 8.06 -2.39 -0.02 2.98 16 46 H 0.39 19.84 7.90 -92.71 -0.73 19.11 16 47 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -73.69 392.06 1.89 -71.79 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.45 Total: 44.36 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 8.59 Total: 33.55 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -8.17 Total: -138.82 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.10 Total: -56.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.69 1.89 -71.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700743354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.784 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds