Wall clock time and date at job start Tue Mar 31 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46847 * 2 1 4 4 N 1.31872 * 119.93362 * 89.99897 * 3 2 1 5 5 N 1.28283 * 122.62625 * 179.97438 * 4 3 2 6 6 C 1.32486 * 122.21687 * 359.97438 * 5 4 3 7 7 O 1.35441 * 120.25229 * 180.02562 * 6 5 4 8 8 C 1.40460 * 119.49464 * 0.02562 * 6 5 4 9 9 C 1.47825 * 121.17793 * 179.97438 * 8 6 5 10 10 O 1.21547 * 119.99945 * 89.99935 * 9 8 6 11 11 N 1.34775 * 119.99797 * 269.99697 * 9 8 6 12 12 C 1.46501 * 119.99874 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47349 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46953 * 295.00895 * 13 12 11 15 15 C 1.52996 * 109.47332 * 175.00381 * 13 12 11 16 16 O 1.42906 * 109.46885 * 305.00176 * 15 13 12 17 17 N 1.46505 * 109.46807 * 55.00436 * 13 12 11 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 13 12 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 13 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 13 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.38482 * 119.93029 * 270.25568 * 3 2 1 27 27 C 1.50707 * 121.05836 * 0.02562 * 26 3 2 28 28 C 1.52990 * 109.47331 * 270.21945 * 27 26 3 29 29 H 1.08993 * 109.47082 * 300.00407 * 1 2 3 30 30 H 1.09008 * 109.47105 * 60.00442 * 1 2 3 31 31 H 1.09000 * 109.46842 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47429 * 240.00038 * 2 1 3 33 33 H 1.08994 * 109.47120 * 119.99661 * 2 1 3 34 34 H 0.96700 * 114.00348 * 269.98051 * 7 6 5 35 35 H 0.97000 * 120.00108 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.46721 * 60.00549 * 12 11 9 37 37 H 1.09000 * 109.47501 * 300.00847 * 12 11 9 38 38 H 1.08998 * 109.47306 * 65.00267 * 15 13 12 39 39 H 1.08990 * 109.47060 * 185.00303 * 15 13 12 40 40 H 0.96701 * 113.99874 * 179.97438 * 16 15 13 41 41 H 0.97000 * 119.99792 * 24.99795 * 17 13 12 42 42 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.46856 * 30.22737 * 27 26 3 44 44 H 1.09006 * 109.46435 * 150.22428 * 27 26 3 45 45 H 1.08998 * 109.47492 * 180.02562 * 28 27 26 46 46 H 1.09000 * 109.47797 * 300.00215 * 28 27 26 47 47 H 1.09010 * 109.46980 * 60.00307 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2516 2.0413 1.1428 5 7 2.6791 3.2493 1.2031 6 6 2.9328 3.9638 0.1166 7 8 3.3837 5.2362 0.2266 8 6 2.7306 3.3916 -1.1501 9 6 3.0012 4.1551 -2.3867 10 8 4.1047 4.1178 -2.8948 11 7 2.0241 4.8925 -2.9507 12 6 2.2924 5.6496 -4.1759 13 6 1.0260 6.3947 -4.6027 14 1 0.2538 5.6740 -4.8721 15 6 1.3385 7.2823 -5.8090 16 8 2.4301 8.1487 -5.4927 17 7 0.5519 7.2267 -3.4939 18 6 -0.7703 7.5739 -3.4151 19 1 -1.4638 7.2341 -4.1701 20 6 -1.2206 8.3575 -2.3614 21 7 -2.4925 8.6867 -2.2828 22 14 -0.0213 8.9447 -1.0552 23 1 0.5489 10.2548 -1.4598 24 1 -0.7333 9.0933 0.2395 25 1 1.0739 7.9528 -0.9069 26 6 2.2575 2.0741 -1.2001 27 6 2.0078 1.3872 -2.5181 28 6 3.2814 0.6689 -2.9682 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.6820 5.9008 0.2578 35 1 1.1436 4.9226 -2.5450 36 1 2.5953 4.9642 -4.9676 37 1 3.0914 6.3678 -3.9917 38 1 1.6059 6.6570 -6.6607 39 1 0.4612 7.8793 -6.0578 40 1 2.6836 8.7412 -6.2137 41 1 1.1747 7.5316 -2.8156 42 1 -2.8071 9.2345 -1.5467 43 1 1.2027 0.6615 -2.4027 44 1 1.7249 2.1280 -3.2660 45 1 3.1010 0.1724 -3.9216 46 1 4.0865 1.3946 -3.0835 47 1 3.5644 -0.0719 -2.2202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700790714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:55 Heat of formation + Delta-G solvation = -64.556775 kcal Electronic energy + Delta-G solvation = -30721.820389 eV Core-core repulsion = 26519.829874 eV Total energy + Delta-G solvation = -4201.990515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72436 -39.49550 -38.02538 -37.39288 -36.01342 -35.16628 -33.98841 -33.67517 -31.78135 -31.23448 -30.19325 -29.05682 -26.50176 -25.34126 -24.95594 -23.46063 -22.78985 -22.04964 -20.54490 -20.23816 -19.09371 -18.43948 -18.18149 -17.31065 -16.99147 -16.39578 -15.87245 -15.37199 -15.26313 -15.02924 -14.69069 -14.43521 -14.32976 -13.96483 -13.87946 -13.70869 -13.46832 -13.16776 -12.96771 -12.95068 -12.78664 -12.51438 -12.41028 -12.25779 -11.90686 -11.75017 -11.58652 -11.40582 -11.13929 -11.03254 -10.98192 -10.86893 -10.46959 -10.24660 -10.08085 -9.76162 -9.64603 -9.59332 -9.48475 -9.12422 -8.98358 -7.47631 -5.93679 -3.31072 0.29927 0.51733 2.39285 2.92324 3.09287 3.21179 3.27168 3.31461 3.36763 3.82060 4.08140 4.22813 4.44055 4.45171 4.63210 4.70971 4.79592 4.82313 4.90963 4.98366 5.07321 5.15050 5.18385 5.20093 5.33914 5.34952 5.41019 5.54163 5.56298 5.66229 5.71904 5.74813 5.77969 5.80405 5.83609 5.90449 6.02030 6.04984 6.25460 6.45184 6.52129 7.14612 7.48303 7.78633 8.01057 8.10657 8.24857 8.43730 9.01912 9.74288 9.93805 11.23798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.004096 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.077480 B = 6834.788811 C = 7731.510742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C 0.063 3.937 4 N -0.204 5.204 5 N -0.254 5.254 6 C 0.291 3.709 7 O -0.467 6.467 8 C -0.140 4.140 9 C 0.570 3.430 10 O -0.523 6.523 11 N -0.705 5.705 12 C 0.114 3.886 13 C 0.172 3.828 14 H 0.075 0.925 15 C 0.059 3.941 16 O -0.565 6.565 17 N -0.739 5.739 18 C -0.254 4.254 19 H 0.091 0.909 20 C 0.011 3.989 21 N -0.928 5.928 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.026 4.026 27 C -0.093 4.093 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.412 0.588 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.368 0.632 41 H 0.365 0.635 42 H 0.261 0.739 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -16.683 -2.465 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.083 4.083 4 N -0.049 5.049 5 N -0.105 5.105 6 C 0.105 3.895 7 O -0.274 6.274 8 C -0.155 4.155 9 C 0.353 3.647 10 O -0.399 6.399 11 N -0.357 5.357 12 C -0.010 4.010 13 C 0.061 3.939 14 H 0.093 0.907 15 C -0.022 4.022 16 O -0.369 6.369 17 N -0.382 5.382 18 C -0.384 4.384 19 H 0.109 0.891 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.717 3.283 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.037 4.037 27 C -0.131 4.131 28 C -0.207 4.207 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.272 0.728 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.213 0.787 41 H 0.199 0.801 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.513 -17.155 -0.677 19.163 hybrid contribution -0.035 1.550 -0.872 1.779 sum 8.478 -15.605 -1.549 17.827 Atomic orbital electron populations 1.21771 0.93406 1.02655 1.02908 1.20502 0.97035 0.88936 1.04418 1.22737 0.97372 0.98930 0.89240 1.72817 1.06664 1.01076 1.24331 1.73062 1.09887 1.01253 1.26339 1.20865 0.91992 0.88491 0.88191 1.84718 1.35715 1.11799 1.95140 1.21402 1.02049 0.96449 0.95625 1.17617 0.84969 0.79364 0.82797 1.90812 1.22573 1.63728 1.62790 1.46044 1.14546 1.47157 1.27957 1.21721 0.99497 0.94494 0.85266 1.20573 0.93058 0.91602 0.88632 0.90699 1.22979 0.89223 0.92722 0.97260 1.86513 1.52551 1.54450 1.43395 1.42726 1.07610 1.61148 1.26706 1.19028 0.83484 1.27165 1.08680 0.89120 1.24660 0.95643 0.99729 0.98517 1.69690 1.13097 1.41431 1.33252 0.86556 0.80394 0.79224 0.82094 1.20891 1.21745 1.20729 1.21093 0.93199 0.91706 0.97739 1.20748 1.00108 1.00366 0.91884 1.21772 0.96730 1.00678 1.01501 0.91823 0.92234 0.91341 0.89369 0.89141 0.72754 0.75375 0.91255 0.90148 0.95044 0.92649 0.78721 0.80121 0.92863 0.88858 0.89714 0.91263 0.91500 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.78 37.16 0.36 -0.72 16 2 C -0.07 -0.55 5.56 -27.88 -0.16 -0.71 16 3 C 0.06 0.74 6.11 -82.48 -0.50 0.23 16 4 N -0.20 -2.97 11.40 33.56 0.38 -2.59 16 5 N -0.25 -4.11 11.52 30.73 0.35 -3.76 16 6 C 0.29 4.58 7.88 -16.43 -0.13 4.45 16 7 O -0.47 -7.21 13.09 -18.01 -0.24 -7.45 16 8 C -0.14 -2.05 5.69 -104.45 -0.59 -2.64 16 9 C 0.57 8.98 5.62 -12.34 -0.07 8.91 16 10 O -0.52 -9.74 17.10 5.32 0.09 -9.65 16 11 N -0.71 -10.53 5.39 -61.25 -0.33 -10.86 16 12 C 0.11 1.74 5.12 -4.04 -0.02 1.72 16 13 C 0.17 2.85 2.84 -67.93 -0.19 2.66 16 14 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 15 C 0.06 0.91 6.86 37.16 0.25 1.16 16 16 O -0.57 -8.81 12.64 -35.23 -0.45 -9.26 16 17 N -0.74 -15.45 4.31 -53.42 -0.23 -15.68 16 18 C -0.25 -6.44 10.41 -15.06 -0.16 -6.59 16 19 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -27.45 13.97 55.49 0.78 -26.67 16 22 Si 0.89 21.00 27.74 -169.99 -4.72 16.29 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.02 6.51 56.52 0.37 -5.65 16 26 C -0.03 -0.31 5.22 -103.84 -0.54 -0.85 16 27 C -0.09 -0.86 5.06 -27.88 -0.14 -1.00 16 28 C -0.15 -1.30 9.78 37.15 0.36 -0.94 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.43 7.43 -51.92 -0.39 0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.52 6.00 -51.93 -0.31 0.21 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 5.01 9.06 45.56 0.41 5.43 16 35 H 0.41 6.13 8.12 -40.82 -0.33 5.80 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.08 1.40 7.39 -51.93 -0.38 1.01 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.37 4.01 9.12 45.56 0.42 4.43 16 41 H 0.37 7.92 5.66 -40.82 -0.23 7.69 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.09 0.64 6.03 -51.93 -0.31 0.32 16 44 H 0.08 0.84 7.25 -51.93 -0.38 0.47 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.45 7.43 -51.92 -0.39 0.07 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -34.19 392.39 -5.34 -39.54 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -5.28 Total: 18.28 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.62 Total: 5.89 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.95 Total: -59.56 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.59 Total: -26.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.72 Total: 16.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.19 -5.34 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700790714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.019 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds