Wall clock time and date at job start Tue Mar 31 2020 21:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46883 * 90.02242 * 6 5 4 8 8 O 1.21284 * 120.00083 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99508 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47261 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47505 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47384 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99864 * 66.04852 * 13 12 11 15 15 C 1.46900 * 111.00121 * 189.99828 * 13 12 11 16 16 C 1.50694 * 109.47219 * 169.99828 * 15 13 12 17 17 O 1.21298 * 120.00004 * 0.02562 * 16 15 13 18 18 N 1.34775 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.37092 * 120.00368 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00245 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99960 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00277 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47258 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47615 * 120.00352 * 23 21 19 26 26 H 1.48501 * 109.47104 * 240.00424 * 23 21 19 27 27 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 29 29 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 30 30 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 31 31 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 33 33 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 34 34 H 0.96996 * 120.00096 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.46792 * 299.99986 * 10 9 7 36 36 H 1.09007 * 109.47224 * 59.99285 * 10 9 7 37 37 H 1.09004 * 109.47156 * 299.99613 * 11 10 9 38 38 H 1.08998 * 109.47332 * 59.99396 * 11 10 9 39 39 H 1.08998 * 109.46772 * 300.00424 * 12 11 10 40 40 H 1.09002 * 109.46560 * 59.99739 * 12 11 10 41 41 H 1.08996 * 109.47354 * 59.99717 * 14 13 12 42 42 H 1.08994 * 109.46927 * 180.02562 * 14 13 12 43 43 H 1.09004 * 109.46979 * 300.00005 * 14 13 12 44 44 H 1.09000 * 109.47240 * 290.00512 * 15 13 12 45 45 H 1.09008 * 109.46438 * 50.00049 * 15 13 12 46 46 H 0.97001 * 119.99637 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 6 5.2011 -1.8489 1.4211 8 8 4.5611 -1.3890 2.3430 9 7 6.2775 -2.6217 1.6673 10 6 6.6734 -2.9078 3.0485 11 6 7.9159 -3.8004 3.0485 12 6 8.3298 -4.0987 4.4909 13 7 9.5225 -4.9562 4.4909 14 6 10.6817 -4.2457 3.9346 15 6 9.8107 -5.4573 5.8414 16 6 10.8789 -6.5176 5.7664 17 8 11.3538 -6.8253 4.6935 18 7 11.3073 -7.1234 6.8915 19 6 12.2794 -8.0877 6.8234 20 1 12.7023 -8.3616 5.8681 21 6 12.7214 -8.7118 7.9835 22 7 12.2073 -8.3782 9.1459 23 14 14.0465 -10.0251 7.8907 24 1 14.4573 -10.2149 6.4763 25 1 15.2212 -9.6009 8.6940 26 1 13.5150 -11.3034 8.4280 27 8 2.2872 -1.0891 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.4157 1.3161 0.0011 32 1 4.5695 -2.4896 -0.5140 33 1 5.6081 -1.0440 -0.5130 34 1 6.7896 -2.9891 0.9300 35 1 6.8968 -1.9734 3.5633 36 1 5.8589 -3.4194 3.5614 37 1 7.6921 -4.7348 2.5338 38 1 8.7305 -3.2892 2.5354 39 1 8.5537 -3.1641 5.0053 40 1 7.5153 -4.6097 5.0043 41 1 10.8879 -3.3602 4.5357 42 1 11.5507 -4.9035 3.9459 43 1 10.4664 -3.9463 2.9088 44 1 10.1578 -4.6354 6.4675 45 1 8.9045 -5.8841 6.2715 46 1 10.9278 -6.8771 7.7495 47 1 12.5156 -8.8141 9.9557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707379292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:08 Heat of formation + Delta-G solvation = -47.105148 kcal Electronic energy + Delta-G solvation = -27426.445621 eV Core-core repulsion = 23225.211865 eV Total energy + Delta-G solvation = -4201.233756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67889 -40.04314 -38.69507 -36.99562 -35.33905 -35.08732 -33.87993 -33.63282 -31.90817 -31.24554 -30.66513 -27.91542 -27.00643 -25.91690 -24.69497 -23.02123 -22.58065 -21.63899 -21.19861 -20.44059 -19.16421 -17.89298 -17.76701 -17.42110 -16.68749 -16.52665 -16.30821 -15.91081 -15.49952 -15.05735 -14.78483 -14.64116 -14.57157 -14.25335 -14.06145 -13.72308 -13.56105 -13.47304 -13.37203 -13.35241 -12.99975 -12.69127 -12.29354 -12.15112 -11.91096 -11.75593 -11.59269 -11.49356 -11.28275 -11.27054 -10.94769 -10.89527 -10.77310 -10.37331 -10.35083 -10.23256 -9.49707 -9.45365 -9.04210 -8.47158 -7.99043 -7.87502 -6.42607 -3.83411 1.03055 2.14886 2.21289 2.33938 2.85522 3.15433 3.26136 3.33077 3.66836 3.89337 3.95834 4.13146 4.22979 4.37158 4.48706 4.60448 4.76610 4.77400 4.89000 4.92160 5.00261 5.02528 5.06934 5.13585 5.24349 5.36160 5.44810 5.48265 5.55387 5.60855 5.67217 5.71412 5.88637 5.93316 5.96426 5.97398 6.02680 6.09430 6.27404 6.52937 7.05161 7.23852 7.36476 7.37363 7.54532 7.78608 8.05812 8.61028 9.17422 9.53808 10.05528 10.75212 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.041988 B = 0.001313 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.696503 B =21312.686435 C =21526.044894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.192 3.808 3 N -0.485 5.485 4 C -0.022 4.022 5 C -0.031 4.031 6 C -0.055 4.055 7 C 0.511 3.489 8 O -0.530 6.530 9 N -0.726 5.726 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.057 3.943 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 O -0.197 6.197 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.183 0.817 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 16.136 -17.683 30.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.215 5.215 4 C -0.161 4.161 5 C -0.085 4.085 6 C -0.096 4.096 7 C 0.297 3.703 8 O -0.405 6.405 9 N -0.378 5.378 10 C -0.004 4.004 11 C -0.165 4.165 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 O -0.084 6.084 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.200 0.800 32 H 0.134 0.866 33 H 0.147 0.853 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.972 16.340 -17.823 30.734 hybrid contribution 1.228 -0.663 0.905 1.663 sum -17.745 15.677 -16.918 29.101 Atomic orbital electron populations 1.20275 0.81250 1.05082 1.04876 1.26285 0.96461 0.78566 1.00117 1.70440 1.02040 1.30297 1.18712 1.22989 0.95195 0.92716 1.05198 1.22409 0.83204 0.94768 1.08089 1.20046 0.92458 1.00964 0.96089 1.20346 0.80496 0.78683 0.90819 1.90774 1.52868 1.50822 1.46083 1.45945 1.30126 1.52099 1.09654 1.21375 0.97220 0.99688 0.82090 1.21777 0.96259 1.00120 0.98377 1.22003 0.93946 0.95567 0.95633 1.61550 1.04031 1.37154 1.21528 1.22577 0.95088 0.96735 0.98364 1.21866 0.99639 0.97529 0.89536 1.19736 0.86297 0.85933 0.85110 1.90479 1.60479 1.66870 1.28437 1.41875 1.35676 1.34973 1.07573 1.19748 1.14134 1.13665 0.95277 0.87856 1.25257 0.98977 0.99035 0.94661 1.69617 1.43351 1.43211 0.98129 0.85807 0.80021 0.79983 0.78574 1.19216 1.20793 1.20753 1.84353 1.16451 1.37822 1.69791 0.88788 0.88051 0.89312 0.80029 0.86624 0.85330 0.76192 0.91360 0.91172 0.90091 0.91018 0.94864 0.90588 0.96793 0.88610 0.92128 0.93440 0.89373 0.77493 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.19 1.84 8.34 -12.95 -0.11 1.73 16 3 N -0.49 -5.46 11.29 -11.10 -0.13 -5.58 16 4 C -0.02 -0.22 11.80 -17.77 -0.21 -0.43 16 5 C -0.03 -0.29 5.88 -35.69 -0.21 -0.50 16 6 C -0.06 -0.31 6.25 -29.03 -0.18 -0.49 16 7 C 0.51 4.60 7.82 -10.98 -0.09 4.52 16 8 O -0.53 -7.41 16.03 5.55 0.09 -7.32 16 9 N -0.73 -5.11 5.56 -60.29 -0.33 -5.45 16 10 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 11 C -0.13 -1.16 5.25 -26.73 -0.14 -1.30 16 12 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 13 N -0.52 -8.23 4.50 -244.37 -1.10 -9.33 16 14 C 0.02 0.31 8.96 60.07 0.54 0.85 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 16 C 0.44 10.33 7.48 -10.99 -0.08 10.24 16 17 O -0.58 -15.30 13.91 5.54 0.08 -15.22 16 18 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 O -0.20 -2.06 10.78 5.34 0.06 -2.01 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 1.64 8.47 -40.82 -0.35 1.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 39 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 43 H 0.06 0.78 6.47 -51.93 -0.34 0.45 16 44 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 45 H 0.09 1.40 7.93 -51.92 -0.41 0.99 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -37.19 398.96 -7.14 -44.34 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.05 Total: 7.34 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.41 Total: 9.27 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.89 Total: -58.27 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.22 Total: -24.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.19 -7.14 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707379292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.767 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds