Wall clock time and date at job start Tue Mar 31 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46883 * 90.02242 * 6 5 4 8 8 O 1.21284 * 120.00083 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99508 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47261 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47505 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47384 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99864 * 66.04852 * 13 12 11 15 15 C 1.46900 * 111.00121 * 189.99828 * 13 12 11 16 16 C 1.50694 * 109.47219 * 169.99828 * 15 13 12 17 17 O 1.21298 * 120.00004 * 0.02562 * 16 15 13 18 18 N 1.34775 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.37092 * 120.00368 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00245 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99960 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00277 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47258 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47615 * 120.00352 * 23 21 19 26 26 H 1.48501 * 109.47104 * 240.00424 * 23 21 19 27 27 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 29 29 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 30 30 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 31 31 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 33 33 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 34 34 H 0.96996 * 120.00096 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.46792 * 299.99986 * 10 9 7 36 36 H 1.09007 * 109.47224 * 59.99285 * 10 9 7 37 37 H 1.09004 * 109.47156 * 299.99613 * 11 10 9 38 38 H 1.08998 * 109.47332 * 59.99396 * 11 10 9 39 39 H 1.08998 * 109.46772 * 300.00424 * 12 11 10 40 40 H 1.09002 * 109.46560 * 59.99739 * 12 11 10 41 41 H 1.08996 * 109.47354 * 59.99717 * 14 13 12 42 42 H 1.08994 * 109.46927 * 180.02562 * 14 13 12 43 43 H 1.09004 * 109.46979 * 300.00005 * 14 13 12 44 44 H 1.09000 * 109.47240 * 290.00512 * 15 13 12 45 45 H 1.09008 * 109.46438 * 50.00049 * 15 13 12 46 46 H 0.97001 * 119.99637 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 6 5.2011 -1.8489 1.4211 8 8 4.5611 -1.3890 2.3430 9 7 6.2775 -2.6217 1.6673 10 6 6.6734 -2.9078 3.0485 11 6 7.9159 -3.8004 3.0485 12 6 8.3298 -4.0987 4.4909 13 7 9.5225 -4.9562 4.4909 14 6 10.6817 -4.2457 3.9346 15 6 9.8107 -5.4573 5.8414 16 6 10.8789 -6.5176 5.7664 17 8 11.3538 -6.8253 4.6935 18 7 11.3073 -7.1234 6.8915 19 6 12.2794 -8.0877 6.8234 20 1 12.7023 -8.3616 5.8681 21 6 12.7214 -8.7118 7.9835 22 7 12.2073 -8.3782 9.1459 23 14 14.0465 -10.0251 7.8907 24 1 14.4573 -10.2149 6.4763 25 1 15.2212 -9.6009 8.6940 26 1 13.5150 -11.3034 8.4280 27 8 2.2872 -1.0891 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.4157 1.3161 0.0011 32 1 4.5695 -2.4896 -0.5140 33 1 5.6081 -1.0440 -0.5130 34 1 6.7896 -2.9891 0.9300 35 1 6.8968 -1.9734 3.5633 36 1 5.8589 -3.4194 3.5614 37 1 7.6921 -4.7348 2.5338 38 1 8.7305 -3.2892 2.5354 39 1 8.5537 -3.1641 5.0053 40 1 7.5153 -4.6097 5.0043 41 1 10.8879 -3.3602 4.5357 42 1 11.5507 -4.9035 3.9459 43 1 10.4664 -3.9463 2.9088 44 1 10.1578 -4.6354 6.4675 45 1 8.9045 -5.8841 6.2715 46 1 10.9278 -6.8771 7.7495 47 1 12.5156 -8.8141 9.9557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707379292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:07 Heat of formation + Delta-G solvation = -78.832549 kcal Electronic energy + Delta-G solvation = -27427.821425 eV Core-core repulsion = 23225.211865 eV Total energy + Delta-G solvation = -4202.609559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.34473 -40.77551 -40.35112 -38.27919 -36.30289 -35.79318 -35.77761 -34.22638 -33.27952 -32.69501 -31.22444 -29.35255 -27.84803 -26.97013 -26.23270 -24.03585 -23.34545 -22.31351 -22.05402 -21.22339 -20.96261 -19.84241 -18.47391 -18.08580 -17.81400 -17.37313 -17.12326 -16.99638 -16.56866 -16.49867 -16.22945 -15.82236 -15.45932 -15.30572 -15.06612 -14.96649 -14.74627 -14.58332 -14.06090 -13.84055 -13.73979 -13.51045 -13.46634 -13.28014 -13.06505 -13.00092 -12.79558 -12.70880 -12.49839 -12.37475 -12.31509 -12.31278 -12.10405 -11.63500 -11.60505 -11.45129 -11.15034 -10.26668 -10.14593 -9.98616 -9.68343 -9.18952 -8.45529 -5.94012 0.37565 1.37226 1.42512 1.53738 1.56450 1.57373 1.69276 2.07042 2.20762 2.30959 2.82977 3.15073 3.21635 3.44354 3.58521 3.84735 3.97576 4.01939 4.08503 4.14550 4.16026 4.33141 4.38386 4.41626 4.49760 4.55731 4.61278 4.61977 4.64711 4.65844 4.69171 4.77404 4.81181 5.00619 5.02532 5.10906 5.21017 5.29632 5.36971 5.41289 5.42821 5.89709 6.08682 6.24330 6.49692 6.62194 6.70022 7.14603 7.18756 7.58318 8.14062 8.72151 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.041988 B = 0.001313 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.696503 B =21312.686435 C =21526.044894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.183 3.817 3 N -0.520 5.520 4 C -0.043 4.043 5 C -0.041 4.041 6 C -0.047 4.047 7 C 0.510 3.490 8 O -0.587 6.587 9 N -0.712 5.712 10 C 0.127 3.873 11 C -0.113 4.113 12 C 0.056 3.944 13 N -0.536 5.536 14 C 0.025 3.975 15 C 0.056 3.944 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 O -0.213 6.213 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.199 0.801 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.421 0.579 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.026 0.974 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.893 16.305 -18.606 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 N -0.250 5.250 4 C -0.181 4.181 5 C -0.094 4.094 6 C -0.086 4.086 7 C 0.297 3.703 8 O -0.467 6.467 9 N -0.364 5.364 10 C 0.003 3.997 11 C -0.151 4.151 12 C -0.072 4.072 13 N -0.261 5.261 14 C -0.123 4.123 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 O -0.101 6.101 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.216 0.784 32 H 0.160 0.840 33 H 0.186 0.814 34 H 0.259 0.741 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.324 16.510 -18.768 31.595 hybrid contribution 1.304 -0.670 1.157 1.867 sum -18.020 15.841 -17.611 29.762 Atomic orbital electron populations 1.20528 0.78446 1.06643 1.05847 1.27220 0.98012 0.78116 0.98972 1.70428 1.03033 1.31413 1.20171 1.23405 0.95440 0.93619 1.05649 1.23037 0.83736 0.95275 1.07383 1.20240 0.92058 1.02181 0.94160 1.20899 0.79970 0.77774 0.91610 1.90757 1.54748 1.53147 1.48025 1.45808 1.29698 1.51285 1.09651 1.21180 0.96564 0.99077 0.82916 1.21619 0.96558 1.00145 0.96761 1.22100 0.92178 0.95320 0.97578 1.61520 1.05329 1.38847 1.20390 1.22470 0.93578 0.95992 1.00277 1.21742 0.98202 0.96236 0.91302 1.20787 0.86411 0.85993 0.83940 1.90458 1.61776 1.68050 1.29662 1.41951 1.35820 1.35207 1.08331 1.19700 1.15920 1.15610 0.94854 0.90243 1.26020 1.00640 1.00571 0.94030 1.69677 1.44131 1.43928 0.98571 0.84879 0.77615 0.77611 0.78290 1.19690 1.19702 1.19713 1.84360 1.17217 1.38411 1.70068 0.87937 0.86878 0.87330 0.78366 0.83983 0.81423 0.74131 0.92008 0.92330 0.90247 0.90013 0.93783 0.90046 0.95506 0.92861 0.89526 0.91668 0.87383 0.77103 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.18 3.46 8.34 88.34 0.74 4.20 16 3 N -0.52 -11.77 11.29 -303.83 -3.43 -15.21 16 4 C -0.04 -0.84 11.80 83.39 0.98 0.15 16 5 C -0.04 -0.73 5.88 24.79 0.15 -0.58 16 6 C -0.05 -0.41 6.25 29.10 0.18 -0.23 16 7 C 0.51 8.31 7.82 87.66 0.69 9.00 16 8 O -0.59 -16.27 16.03 -3.04 -0.05 -16.31 16 9 N -0.71 -8.29 5.56 -463.05 -2.57 -10.86 16 10 C 0.13 1.97 5.67 86.38 0.49 2.46 16 11 C -0.11 -1.76 5.25 30.59 0.16 -1.60 16 12 C 0.06 1.18 4.96 86.30 0.43 1.61 16 13 N -0.54 -16.15 4.50 -927.05 -4.17 -20.32 16 14 C 0.02 0.73 8.96 127.69 1.14 1.87 16 15 C 0.06 1.91 5.45 85.56 0.47 2.38 16 16 C 0.44 20.75 7.48 87.66 0.66 21.41 16 17 O -0.61 -33.23 13.91 -3.09 -0.04 -33.27 16 18 N -0.58 -29.39 5.29 -306.99 -1.62 -31.01 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 O -0.21 -4.36 10.78 -3.79 -0.04 -4.40 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.42 2.00 8.47 -92.71 -0.79 1.22 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.08 1.14 6.55 -2.39 -0.02 1.13 16 39 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.08 1.63 7.93 -2.39 -0.02 1.61 16 41 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 43 H 0.09 2.04 6.47 -2.39 -0.02 2.03 16 44 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 45 H 0.11 3.24 7.93 -2.38 -0.02 3.22 16 46 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -83.74 398.96 -2.02 -85.76 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.51 Total: 27.50 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 8.11 Total: 22.78 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -11.52 Total: -126.82 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.13 Total: -53.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -83.74 -2.02 -85.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707379292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.931 kcal (2) G-P(sol) polarization free energy of solvation -83.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds