Wall clock time and date at job start Tue Mar 31 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46885 * 2 1 4 4 N 1.30020 * 127.33861 * 270.14877 * 3 2 1 5 5 O 1.20655 * 112.30031 * 180.27414 * 4 3 2 6 6 C 1.33494 * 113.16169 * 359.73859 * 5 4 3 7 7 C 1.50697 * 126.83479 * 180.02562 * 6 5 4 8 8 C 1.37366 * 106.33747 * 359.97438 * 6 5 4 9 9 C 1.47394 * 128.56213 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00204 * 90.03170 * 9 8 6 11 11 N 1.34784 * 120.00019 * 270.02666 * 9 8 6 12 12 C 1.46493 * 119.99864 * 179.72895 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 N 1.46896 * 109.47228 * 179.97438 * 13 12 11 15 15 C 1.46898 * 111.00158 * 66.04534 * 14 13 12 16 16 C 1.46901 * 110.99908 * 189.99788 * 14 13 12 17 17 C 1.50702 * 109.47163 * 170.00000 * 16 14 13 18 18 O 1.21295 * 119.99952 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99914 * 179.97438 * 17 16 14 20 20 C 1.37099 * 120.00025 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00024 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00152 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00029 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 120.00019 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46847 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47139 * 119.99694 * 24 22 20 27 27 H 1.48496 * 109.47112 * 240.00158 * 24 22 20 28 28 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46755 * 299.99400 * 1 2 3 30 30 H 1.08996 * 109.47126 * 59.99809 * 1 2 3 31 31 H 1.09003 * 109.46755 * 240.00600 * 2 1 3 32 32 H 1.08991 * 109.47519 * 120.00415 * 2 1 3 33 33 H 1.08998 * 109.46972 * 269.99490 * 7 6 5 34 34 H 1.09003 * 109.47240 * 29.99245 * 7 6 5 35 35 H 1.09001 * 109.47636 * 149.99174 * 7 6 5 36 36 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 38 38 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 39 39 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 40 40 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 41 41 H 1.09001 * 109.47499 * 59.99896 * 15 14 13 42 42 H 1.09003 * 109.47356 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47241 * 299.99653 * 15 14 13 44 44 H 1.08998 * 109.47140 * 289.99501 * 16 14 13 45 45 H 1.08995 * 109.47447 * 50.00165 * 16 14 13 46 46 H 0.97000 * 120.00257 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99676 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1652 -1.0337 5 8 2.6868 3.2618 -0.7207 6 6 2.7519 3.4389 0.6008 7 6 3.1988 4.6827 1.3248 8 6 2.3293 2.2621 1.1697 9 6 2.2096 1.9235 2.5992 10 8 1.1691 2.1399 3.1903 11 7 3.2534 1.3740 3.2513 12 6 3.1365 1.0430 4.6735 13 6 4.4524 0.4374 5.1661 14 7 4.3353 0.1061 6.5924 15 6 3.3554 -0.9675 6.8048 16 6 5.6422 -0.2546 7.1581 17 6 5.5319 -0.3478 8.6581 18 8 4.4690 -0.1351 9.2025 19 7 6.6141 -0.6684 9.3948 20 6 6.5139 -0.7526 10.7595 21 1 5.5676 -0.5625 11.2443 22 6 7.6296 -1.0826 11.5190 23 7 8.7810 -1.3134 10.9292 24 14 7.4929 -1.1981 13.3785 25 1 6.0994 -0.8941 13.7921 26 1 7.8516 -2.5707 13.8169 27 1 8.4189 -0.2205 14.0046 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 4.2739 4.6356 1.4982 34 1 2.9665 5.5588 0.7193 35 1 2.6794 4.7535 2.2804 36 1 4.0834 1.2017 2.7798 37 1 2.9188 1.9481 5.2406 38 1 2.3298 0.3234 4.8141 39 1 4.6705 -0.4677 4.5991 40 1 5.2587 1.1572 5.0257 41 1 3.6707 -1.8596 6.2635 42 1 3.2888 -1.1934 7.8691 43 1 2.3799 -0.6466 6.4394 44 1 5.9587 -1.2173 6.7566 45 1 6.3752 0.5078 6.8944 46 1 7.4640 -0.8388 8.9595 47 1 9.5598 -1.5442 11.4595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713475865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:50 Heat of formation + Delta-G solvation = -37.053932 kcal Electronic energy + Delta-G solvation = -28503.892925 eV Core-core repulsion = 24303.095022 eV Total energy + Delta-G solvation = -4200.797903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.96673 -40.83014 -40.30254 -38.18325 -36.37522 -36.02818 -35.53847 -34.64256 -33.25647 -32.41724 -30.83811 -29.23910 -28.78681 -27.09692 -26.25382 -25.34485 -24.40203 -22.34828 -21.85136 -20.97051 -20.83128 -19.83728 -19.10541 -18.82110 -17.79409 -17.45569 -17.34986 -16.87090 -16.55155 -16.29153 -16.08087 -15.70474 -15.59515 -15.22209 -15.10904 -15.01897 -14.54743 -14.49491 -14.17405 -14.06816 -13.76868 -13.73726 -13.52743 -13.44554 -13.03331 -12.94076 -12.63456 -12.58181 -12.54227 -12.52797 -12.37911 -12.15365 -12.08779 -11.89702 -11.48582 -11.44305 -11.03834 -10.45385 -10.27641 -10.23859 -9.97274 -9.22623 -8.44907 -5.92757 0.24647 0.79774 1.22729 1.37461 1.42975 1.56546 1.68700 2.08825 2.11247 2.31462 2.85573 3.05026 3.20001 3.22490 3.44767 3.68877 3.85506 3.87715 4.06943 4.08605 4.21167 4.27299 4.28204 4.35971 4.38383 4.48384 4.55326 4.59578 4.64854 4.65993 4.66622 4.81621 4.85475 4.87634 4.94726 4.98711 5.07706 5.19170 5.21921 5.24139 5.43737 5.86539 6.06359 6.17974 6.34733 6.63663 7.01267 7.14896 7.16168 7.60050 8.16419 8.72622 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.001740 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.333337 B =16084.767396 C =16477.106282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.056 3.944 4 N -0.375 5.375 5 O 0.092 5.908 6 C 0.037 3.963 7 C -0.083 4.083 8 C -0.276 4.276 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.697 5.697 12 C 0.129 3.871 13 C 0.052 3.948 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.060 3.940 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.418 0.582 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 5.751 -25.494 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.106 4.106 4 N -0.082 5.082 5 O 0.032 5.968 6 C -0.027 4.027 7 C -0.139 4.139 8 C -0.284 4.284 9 C 0.392 3.608 10 O -0.444 6.444 11 N -0.349 5.349 12 C 0.005 3.995 13 C -0.076 4.076 14 N -0.262 5.262 15 C -0.124 4.124 16 C -0.070 4.070 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.255 0.745 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.134 0.866 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.637 6.246 -25.687 27.517 hybrid contribution 0.886 -1.067 1.091 1.765 sum -6.752 5.179 -24.596 26.026 Atomic orbital electron populations 1.21706 0.93455 1.03533 1.01587 1.20130 0.96850 0.86544 1.05157 1.25112 0.99838 0.99425 0.86233 1.73610 1.17604 0.93099 1.23901 1.84525 1.62507 1.26619 1.23110 1.25231 0.96236 0.97952 0.83247 1.20728 1.04248 0.89951 0.99021 1.21808 1.15338 0.96697 0.94509 1.16905 0.83123 0.76648 0.84131 1.90844 1.30208 1.54519 1.68827 1.45685 1.16095 1.62119 1.11021 1.21209 0.98098 1.00552 0.79615 1.22253 0.97323 1.01112 0.86922 1.61328 1.07577 1.42393 1.14932 1.22476 0.95895 0.91809 1.02252 1.21737 0.92222 1.02447 0.90640 1.20850 0.84073 0.81979 0.90369 1.90481 1.29621 1.55657 1.74397 1.41932 1.11002 1.61729 1.06616 1.19665 0.97177 1.46073 0.82992 0.90450 1.25992 0.94242 0.96414 1.04674 1.69668 1.00803 1.47626 1.38041 0.84905 0.78193 0.78239 0.77216 1.19935 1.19694 1.19688 0.89441 0.93830 0.92700 0.88054 0.88690 0.86083 0.86980 0.89221 0.74518 0.91730 0.91891 0.92083 0.88077 0.94662 0.92618 0.90692 0.90972 0.86604 0.76955 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.05 -0.70 6.55 29.85 0.20 -0.50 16 3 C 0.06 1.05 6.84 45.16 0.31 1.36 16 4 N -0.37 -7.58 12.01 -44.77 -0.54 -8.12 16 5 O 0.09 1.62 11.06 76.98 0.85 2.47 16 6 C 0.04 0.55 7.55 25.48 0.19 0.74 16 7 C -0.08 -0.61 10.33 71.23 0.74 0.13 16 8 C -0.28 -5.11 6.24 -18.74 -0.12 -5.23 16 9 C 0.61 12.91 7.60 86.65 0.66 13.57 16 10 O -0.57 -17.14 17.11 -4.06 -0.07 -17.21 16 11 N -0.70 -11.03 5.55 -466.39 -2.59 -13.62 16 12 C 0.13 2.59 5.60 86.38 0.48 3.07 16 13 C 0.05 0.96 5.07 86.30 0.44 1.40 16 14 N -0.54 -15.64 4.50 -927.06 -4.17 -19.81 16 15 C 0.02 0.71 8.96 127.69 1.14 1.86 16 16 C 0.06 1.90 5.45 85.56 0.47 2.36 16 17 C 0.44 20.14 7.47 87.66 0.66 20.80 16 18 O -0.62 -33.26 13.91 -3.08 -0.04 -33.30 16 19 N -0.58 -28.64 5.29 -306.98 -1.62 -30.27 16 20 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 24 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 36 H 0.42 4.05 8.46 -92.71 -0.78 3.26 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.06 1.43 6.56 -2.38 -0.02 1.41 16 39 H 0.06 0.91 8.12 -2.38 -0.02 0.89 16 40 H 0.10 1.50 7.93 -2.39 -0.02 1.48 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 2.18 5.82 -2.39 -0.01 2.17 16 43 H 0.07 2.04 6.47 -2.39 -0.02 2.02 16 44 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 45 H 0.12 3.04 7.93 -2.39 -0.02 3.02 16 46 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 47 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -76.00 400.25 0.78 -75.22 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.50 Total: 28.24 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.15 Total: 20.28 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -8.64 Total: -120.31 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: 0.74 Total: -48.03 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.00 0.78 -75.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713475865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.170 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds