Wall clock time and date at job start Tue Mar 31 2020 21:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30616 * 125.42585 * 2 1 4 4 C 1.33679 * 108.99866 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.27702 * 180.02562 * 4 3 2 6 6 C 1.36345 * 107.45411 * 359.97438 * 4 3 2 7 7 C 1.46718 * 126.64593 * 180.02562 * 6 4 3 8 8 O 1.21693 * 119.99971 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00143 * 180.27151 * 7 6 4 10 10 C 1.46505 * 120.00095 * 179.72505 * 9 7 6 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46693 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46727 * 55.00249 * 12 11 10 14 14 C 1.53006 * 109.46681 * 174.99952 * 12 11 10 15 15 N 1.46898 * 109.47324 * 295.00128 * 12 11 10 16 16 C 1.46900 * 110.99676 * 155.00462 * 15 12 11 17 17 C 1.50704 * 109.46961 * 179.97438 * 16 15 12 18 18 O 1.21290 * 119.99686 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00064 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99892 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00455 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99730 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00026 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00207 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46851 * 89.99961 * 24 22 20 26 26 H 1.48500 * 109.47375 * 210.00242 * 24 22 20 27 27 H 1.48503 * 109.47294 * 330.00364 * 24 22 20 28 28 O 1.33665 * 125.42296 * 180.28026 * 2 1 3 29 29 H 1.09003 * 109.47107 * 90.02987 * 1 2 3 30 30 H 1.08996 * 109.47446 * 210.02929 * 1 2 3 31 31 H 1.08999 * 109.47444 * 330.03020 * 1 2 3 32 32 H 1.08995 * 109.47237 * 269.96383 * 5 4 3 33 33 H 1.09005 * 109.46511 * 29.96361 * 5 4 3 34 34 H 1.09004 * 109.47127 * 149.95419 * 5 4 3 35 35 H 0.97000 * 120.00112 * 359.72940 * 9 7 6 36 36 H 1.09003 * 109.47169 * 299.99748 * 10 9 7 37 37 H 1.08993 * 109.47199 * 60.00009 * 10 9 7 38 38 H 1.08995 * 109.46981 * 300.00025 * 11 10 9 39 39 H 1.09001 * 109.47199 * 60.00176 * 11 10 9 40 40 H 1.09001 * 109.46869 * 60.00323 * 14 12 11 41 41 H 1.09003 * 109.46879 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46989 * 300.00382 * 14 12 11 43 43 H 1.00896 * 110.99855 * 31.04575 * 15 12 11 44 44 H 1.09006 * 109.47016 * 299.99511 * 16 15 12 45 45 H 1.08992 * 109.47629 * 59.99774 * 16 15 12 46 46 H 0.97000 * 119.99511 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0643 0.0000 4 6 3.5463 0.6863 0.0006 5 6 4.7452 1.5995 0.0013 6 6 3.5708 -0.6769 0.0015 7 6 4.7634 -1.5314 0.0029 8 8 5.8718 -1.0290 0.0029 9 7 4.6315 -2.8726 -0.0018 10 6 5.8225 -3.7259 -0.0065 11 6 5.3969 -5.1955 -0.0119 12 6 6.6407 -6.0865 -0.0175 13 1 7.2806 -5.8224 0.8245 14 6 6.2186 -7.5523 0.1029 15 7 7.3778 -5.8907 -1.2730 16 6 8.7994 -6.2209 -1.1057 17 6 9.5213 -6.0090 -2.4115 18 8 8.9114 -5.6214 -3.3857 19 7 10.8446 -6.2500 -2.4969 20 6 11.5012 -6.0577 -3.6849 21 1 10.9582 -5.7126 -4.5523 22 6 12.8654 -6.3068 -3.7729 23 7 13.4949 -6.1219 -4.9115 24 14 13.8048 -6.9029 -2.2725 25 1 13.7882 -8.3874 -2.2358 26 1 15.2089 -6.4252 -2.3454 27 1 13.1639 -6.3702 -1.0433 28 8 2.2817 -1.0892 -0.0053 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5133 32 1 5.0351 1.8193 -1.0261 33 1 4.4944 2.5278 0.5147 34 1 5.5730 1.1119 0.5162 35 1 3.7480 -3.2731 -0.0021 36 1 6.4159 -3.5165 -0.8966 37 1 6.4182 -3.5230 0.8834 38 1 4.8033 -5.4051 0.8778 39 1 4.8014 -5.3981 -0.9021 40 1 5.5787 -7.8163 -0.7391 41 1 7.1047 -8.1870 0.0994 42 1 5.6716 -7.6975 1.0345 43 1 7.2633 -4.9489 -1.6163 44 1 9.2344 -5.5773 -0.3410 45 1 8.8971 -7.2631 -0.8020 46 1 11.3322 -6.5603 -1.7178 47 1 14.4471 -6.2961 -4.9732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714464014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:40 Heat of formation + Delta-G solvation = -52.912152 kcal Electronic energy + Delta-G solvation = -28346.101322 eV Core-core repulsion = 24144.615755 eV Total energy + Delta-G solvation = -4201.485567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.84779 -39.91773 -38.65013 -37.34511 -35.87425 -34.89811 -33.93548 -33.22793 -31.80821 -31.47032 -29.79570 -29.48180 -27.53850 -26.56738 -24.17769 -23.43167 -22.42327 -21.99629 -21.07993 -20.39930 -19.38013 -18.57390 -18.27303 -17.48437 -16.67230 -16.22395 -16.15696 -15.83073 -15.40731 -15.10206 -14.74541 -14.65001 -14.55142 -13.98128 -13.85520 -13.55290 -13.51430 -13.39936 -13.38819 -13.15329 -13.12145 -12.65131 -12.49128 -12.31778 -12.17523 -12.00155 -11.79001 -11.45016 -11.38418 -11.36219 -11.25616 -11.17543 -10.89905 -10.57803 -10.42524 -9.95571 -9.57570 -9.55351 -9.11833 -8.56536 -8.19358 -8.14174 -6.29010 -3.80323 0.41196 1.94761 1.98232 2.72915 2.76612 3.04200 3.08307 3.16446 3.44314 3.76008 4.05973 4.12506 4.27670 4.31221 4.48589 4.71157 4.74941 4.78690 4.78771 4.87790 4.91604 5.13948 5.21609 5.23036 5.26468 5.29540 5.38662 5.43273 5.53127 5.58507 5.60931 5.66556 5.72537 5.76315 5.85783 5.93394 5.94407 5.96199 6.03410 6.25071 6.93514 7.10477 7.21987 7.55799 7.60420 7.68970 8.16693 8.61877 8.97137 9.44554 9.84868 10.84149 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.001972 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.048655 B =14191.959006 C =15270.543402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.221 3.779 3 N -0.490 5.490 4 C 0.087 3.913 5 C -0.084 4.084 6 C -0.123 4.123 7 C 0.608 3.392 8 O -0.507 6.507 9 N -0.716 5.716 10 C 0.112 3.888 11 C -0.133 4.133 12 C 0.087 3.913 13 H 0.046 0.954 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 O -0.190 6.190 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.405 0.595 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.350 0.650 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.218 7.310 17.370 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.016 3.984 3 N -0.221 5.221 4 C -0.037 4.037 5 C -0.140 4.140 6 C -0.177 4.177 7 C 0.394 3.606 8 O -0.384 6.384 9 N -0.367 5.367 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.024 4.024 13 H 0.064 0.936 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 O -0.078 6.078 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.240 0.760 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.172 0.828 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.030 7.843 16.315 30.890 hybrid contribution 1.045 -0.671 1.550 1.986 sum -23.986 7.172 17.865 30.756 Atomic orbital electron populations 1.20402 0.80622 1.05619 1.05283 1.26589 0.96692 0.78604 0.96560 1.70369 1.01646 1.29939 1.20102 1.22117 0.93484 0.91301 0.96840 1.20436 0.92100 0.97450 1.04059 1.22846 0.82276 0.95204 1.17405 1.16287 0.85498 0.81623 0.77242 1.90910 1.23641 1.73762 1.50120 1.45832 1.10814 1.05326 1.74713 1.21597 0.87051 0.89260 1.03229 1.21995 0.98974 0.92424 1.03749 1.21457 0.93600 0.95800 0.91535 0.93624 1.21790 1.01698 0.95007 1.01237 1.60191 1.09208 1.33508 1.27221 1.21764 0.88642 1.01772 0.96393 1.19715 0.82495 0.84408 0.89845 1.90566 1.66114 1.49661 1.38276 1.42204 1.07601 1.61059 1.12154 1.19432 0.91930 1.42682 0.89267 0.86288 1.25042 0.96340 0.97778 0.97051 1.69621 1.10206 1.47975 1.24348 0.86665 0.80522 0.79669 0.82487 1.19623 1.20195 1.19523 1.84420 1.16171 1.37378 1.69788 0.88253 0.88851 0.87635 0.89676 0.90364 0.88517 0.76033 0.90368 0.90913 0.90456 0.89825 0.91730 0.92391 0.92817 0.82787 0.93677 0.89426 0.79706 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.22 1.86 8.32 -12.80 -0.11 1.75 16 3 N -0.49 -5.33 11.26 -7.07 -0.08 -5.41 16 4 C 0.09 1.00 7.16 -82.47 -0.59 0.41 16 5 C -0.08 -0.83 9.87 36.01 0.36 -0.48 16 6 C -0.12 -1.39 7.18 -36.84 -0.26 -1.65 16 7 C 0.61 7.38 7.79 -12.84 -0.10 7.28 16 8 O -0.51 -7.60 14.79 5.20 0.08 -7.52 16 9 N -0.72 -6.88 5.55 -61.60 -0.34 -7.22 16 10 C 0.11 1.13 5.51 -4.04 -0.02 1.11 16 11 C -0.13 -1.13 4.92 -26.73 -0.13 -1.26 16 12 C 0.09 0.92 2.65 -67.71 -0.18 0.74 16 13 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 14 C -0.14 -1.37 9.41 37.16 0.35 -1.02 16 15 N -0.67 -10.00 5.93 -107.99 -0.64 -10.64 16 16 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 17 C 0.45 10.33 7.82 -10.98 -0.09 10.25 16 18 O -0.56 -15.36 15.78 5.55 0.09 -15.28 16 19 N -0.59 -14.26 5.09 -10.96 -0.06 -14.32 16 20 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 24 Si 0.88 19.58 27.73 -169.99 -4.71 14.87 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 O -0.19 -1.80 10.57 4.44 0.05 -1.75 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.04 6.47 -51.93 -0.34 0.70 16 35 H 0.40 2.93 8.27 -40.82 -0.34 2.59 16 36 H 0.08 0.97 6.42 -51.93 -0.33 0.64 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.35 5.58 6.17 -39.29 -0.24 5.34 16 44 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 45 H 0.09 1.29 7.44 -51.93 -0.39 0.90 16 46 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -36.51 395.11 -6.43 -42.94 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.86 Total: 13.42 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.67 Total: 10.21 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.34 Total: -62.84 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.21 Total: -24.55 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.51 -6.43 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714464014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.975 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds