Wall clock time and date at job start Tue Mar 31 2020 21:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30616 * 125.42585 * 2 1 4 4 C 1.33679 * 108.99866 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.27702 * 180.02562 * 4 3 2 6 6 C 1.36345 * 107.45411 * 359.97438 * 4 3 2 7 7 C 1.46718 * 126.64593 * 180.02562 * 6 4 3 8 8 O 1.21693 * 119.99971 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00143 * 180.27151 * 7 6 4 10 10 C 1.46505 * 120.00095 * 179.72505 * 9 7 6 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46693 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46727 * 55.00249 * 12 11 10 14 14 C 1.53006 * 109.46681 * 174.99952 * 12 11 10 15 15 N 1.46898 * 109.47324 * 295.00128 * 12 11 10 16 16 C 1.46900 * 110.99676 * 155.00462 * 15 12 11 17 17 C 1.50704 * 109.46961 * 179.97438 * 16 15 12 18 18 O 1.21290 * 119.99686 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00064 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99892 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00455 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99730 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00026 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00207 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46851 * 89.99961 * 24 22 20 26 26 H 1.48500 * 109.47375 * 210.00242 * 24 22 20 27 27 H 1.48503 * 109.47294 * 330.00364 * 24 22 20 28 28 O 1.33665 * 125.42296 * 180.28026 * 2 1 3 29 29 H 1.09003 * 109.47107 * 90.02987 * 1 2 3 30 30 H 1.08996 * 109.47446 * 210.02929 * 1 2 3 31 31 H 1.08999 * 109.47444 * 330.03020 * 1 2 3 32 32 H 1.08995 * 109.47237 * 269.96383 * 5 4 3 33 33 H 1.09005 * 109.46511 * 29.96361 * 5 4 3 34 34 H 1.09004 * 109.47127 * 149.95419 * 5 4 3 35 35 H 0.97000 * 120.00112 * 359.72940 * 9 7 6 36 36 H 1.09003 * 109.47169 * 299.99748 * 10 9 7 37 37 H 1.08993 * 109.47199 * 60.00009 * 10 9 7 38 38 H 1.08995 * 109.46981 * 300.00025 * 11 10 9 39 39 H 1.09001 * 109.47199 * 60.00176 * 11 10 9 40 40 H 1.09001 * 109.46869 * 60.00323 * 14 12 11 41 41 H 1.09003 * 109.46879 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46989 * 300.00382 * 14 12 11 43 43 H 1.00896 * 110.99855 * 31.04575 * 15 12 11 44 44 H 1.09006 * 109.47016 * 299.99511 * 16 15 12 45 45 H 1.08992 * 109.47629 * 59.99774 * 16 15 12 46 46 H 0.97000 * 119.99511 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0643 0.0000 4 6 3.5463 0.6863 0.0006 5 6 4.7452 1.5995 0.0013 6 6 3.5708 -0.6769 0.0015 7 6 4.7634 -1.5314 0.0029 8 8 5.8718 -1.0290 0.0029 9 7 4.6315 -2.8726 -0.0018 10 6 5.8225 -3.7259 -0.0065 11 6 5.3969 -5.1955 -0.0119 12 6 6.6407 -6.0865 -0.0175 13 1 7.2806 -5.8224 0.8245 14 6 6.2186 -7.5523 0.1029 15 7 7.3778 -5.8907 -1.2730 16 6 8.7994 -6.2209 -1.1057 17 6 9.5213 -6.0090 -2.4115 18 8 8.9114 -5.6214 -3.3857 19 7 10.8446 -6.2500 -2.4969 20 6 11.5012 -6.0577 -3.6849 21 1 10.9582 -5.7126 -4.5523 22 6 12.8654 -6.3068 -3.7729 23 7 13.4949 -6.1219 -4.9115 24 14 13.8048 -6.9029 -2.2725 25 1 13.7882 -8.3874 -2.2358 26 1 15.2089 -6.4252 -2.3454 27 1 13.1639 -6.3702 -1.0433 28 8 2.2817 -1.0892 -0.0053 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5133 32 1 5.0351 1.8193 -1.0261 33 1 4.4944 2.5278 0.5147 34 1 5.5730 1.1119 0.5162 35 1 3.7480 -3.2731 -0.0021 36 1 6.4159 -3.5165 -0.8966 37 1 6.4182 -3.5230 0.8834 38 1 4.8033 -5.4051 0.8778 39 1 4.8014 -5.3981 -0.9021 40 1 5.5787 -7.8163 -0.7391 41 1 7.1047 -8.1870 0.0994 42 1 5.6716 -7.6975 1.0345 43 1 7.2633 -4.9489 -1.6163 44 1 9.2344 -5.5773 -0.3410 45 1 8.8971 -7.2631 -0.8020 46 1 11.3322 -6.5603 -1.7178 47 1 14.4471 -6.2961 -4.9732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714464014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:39 Heat of formation + Delta-G solvation = -85.531315 kcal Electronic energy + Delta-G solvation = -28347.515795 eV Core-core repulsion = 24144.615755 eV Total energy + Delta-G solvation = -4202.900040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.58616 -40.84457 -40.34614 -38.47554 -36.68022 -36.07869 -35.72206 -33.87083 -33.77044 -32.69914 -30.38411 -30.29410 -28.35464 -28.10468 -25.69309 -24.48095 -23.12835 -22.78016 -21.91400 -21.34581 -21.21108 -20.30380 -19.33383 -18.23130 -17.87297 -17.43152 -17.01293 -16.83670 -16.82133 -16.56638 -15.99137 -15.61799 -15.42982 -15.27348 -15.01039 -14.67901 -14.47840 -14.38227 -14.29147 -14.10714 -13.94989 -13.86608 -13.51006 -13.40935 -13.23331 -13.15738 -12.90781 -12.59764 -12.42746 -12.31728 -12.22259 -12.11628 -12.05962 -11.97970 -11.77414 -11.52220 -11.32681 -10.47874 -10.42372 -10.25892 -9.88773 -9.32598 -8.42185 -6.03254 -0.37693 1.20974 1.23213 1.29464 1.35016 1.43958 1.84535 1.94427 1.98334 2.22378 2.72785 2.84021 3.13833 3.39652 3.54665 3.56243 3.74245 3.93854 4.07137 4.15287 4.22655 4.26867 4.41065 4.46002 4.50511 4.57214 4.58816 4.59439 4.62266 4.65082 4.71290 4.82987 4.94810 4.96845 5.02018 5.07291 5.16305 5.20307 5.26643 5.48795 5.52723 5.90733 6.08659 6.15466 6.38653 6.47097 6.58780 6.84579 6.86957 7.38499 7.95334 8.75541 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.001972 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.048655 B =14191.959006 C =15270.543402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.234 3.766 3 N -0.519 5.519 4 C 0.074 3.926 5 C -0.081 4.081 6 C -0.142 4.142 7 C 0.605 3.395 8 O -0.546 6.546 9 N -0.701 5.701 10 C 0.115 3.885 11 C -0.120 4.120 12 C 0.085 3.915 13 H 0.061 0.939 14 C -0.137 4.137 15 N -0.686 5.686 16 C 0.061 3.939 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.232 1.232 28 O -0.188 6.188 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.418 0.582 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.341 0.659 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.852 5.918 21.269 34.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.029 3.971 3 N -0.249 5.249 4 C -0.050 4.050 5 C -0.138 4.138 6 C -0.197 4.197 7 C 0.391 3.609 8 O -0.426 6.426 9 N -0.353 5.353 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.024 4.024 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.155 1.155 28 O -0.076 6.076 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.161 0.839 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.225 0.775 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.717 6.421 20.245 34.131 hybrid contribution 1.355 -0.179 0.225 1.385 sum -25.362 6.242 20.470 33.184 Atomic orbital electron populations 1.20779 0.76808 1.07416 1.06901 1.27754 0.98313 0.77729 0.93320 1.70404 1.01519 1.31101 1.21909 1.22397 0.94242 0.91754 0.96563 1.20413 0.91542 0.97776 1.04066 1.22630 0.82835 0.95041 1.19156 1.16441 0.85319 0.82296 0.76825 1.90881 1.25062 1.74540 1.52077 1.45718 1.11478 1.04539 1.73519 1.21538 0.86992 0.90431 1.01908 1.21918 0.98299 0.90444 1.05143 1.21620 0.94024 0.96947 0.89846 0.92125 1.21790 1.01545 0.93859 1.02283 1.60237 1.08590 1.33071 1.30148 1.21690 0.88982 1.04039 0.92407 1.21057 0.82052 0.81756 0.91690 1.90541 1.67185 1.51254 1.41016 1.42032 1.08197 1.61742 1.11272 1.19005 0.92713 1.44616 0.89568 0.92819 1.26148 0.96852 0.97026 1.01473 1.69807 1.10980 1.49036 1.27656 0.85344 0.78209 0.79685 0.78146 1.17948 1.20000 1.15519 1.84422 1.15458 1.37678 1.70005 0.86443 0.86413 0.86394 0.89675 0.88995 0.89644 0.74490 0.93195 0.90817 0.87207 0.90173 0.92859 0.93017 0.89936 0.83856 0.90790 0.86665 0.77452 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 71.24 0.75 0.54 16 2 C 0.23 3.56 8.32 88.29 0.73 4.30 16 3 N -0.52 -10.96 11.26 -291.06 -3.28 -14.24 16 4 C 0.07 1.74 7.16 41.84 0.30 2.04 16 5 C -0.08 -1.69 9.87 71.24 0.70 -0.99 16 6 C -0.14 -3.22 7.18 24.05 0.17 -3.05 16 7 C 0.61 14.95 7.79 86.46 0.67 15.63 16 8 O -0.55 -17.09 14.79 -4.33 -0.06 -17.15 16 9 N -0.70 -12.99 5.55 -467.03 -2.59 -15.58 16 10 C 0.11 2.21 5.51 86.38 0.48 2.69 16 11 C -0.12 -1.73 4.92 30.60 0.15 -1.58 16 12 C 0.09 1.57 2.65 44.92 0.12 1.69 16 13 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 14 C -0.14 -2.22 9.41 71.98 0.68 -1.54 16 15 N -0.69 -19.74 5.93 -495.56 -2.94 -22.68 16 16 C 0.06 1.89 5.97 85.56 0.51 2.40 16 17 C 0.45 20.69 7.82 87.66 0.69 21.38 16 18 O -0.62 -35.12 15.78 -3.06 -0.05 -35.17 16 19 N -0.59 -28.52 5.09 -306.98 -1.56 -30.09 16 20 C -0.33 -19.77 10.16 84.04 0.85 -18.92 16 21 H 0.05 3.84 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.93 -57.27 13.96 21.66 0.30 -56.96 16 24 Si 0.97 39.41 27.73 68.60 1.90 41.31 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 28 O -0.19 -3.34 10.57 -7.04 -0.07 -3.41 16 29 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 1.97 6.47 -2.38 -0.02 1.95 16 35 H 0.42 5.40 8.27 -92.71 -0.77 4.63 16 36 H 0.05 1.27 6.42 -2.39 -0.02 1.26 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.91 7.45 -2.39 -0.02 0.89 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.34 10.95 6.17 -89.70 -0.55 10.40 16 44 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16 45 H 0.12 2.98 7.44 -2.39 -0.02 2.96 16 46 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 47 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -87.43 395.11 -1.96 -89.40 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.88 Total: 40.46 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 7.27 Total: 24.11 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -10.07 Total: -139.55 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.19 Total: -55.73 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.31 kcal Total: -87.43 -1.96 -89.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714464014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.867 kcal (2) G-P(sol) polarization free energy of solvation -87.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds