Wall clock time and date at job start Tue Mar 31 2020 21:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30614 * 125.42293 * 2 1 4 4 C 1.33694 * 108.99932 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27680 * 179.73625 * 4 3 2 6 6 C 1.36349 * 107.44972 * 0.02562 * 4 3 2 7 7 C 1.46720 * 126.64227 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00293 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99608 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99604 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46942 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46805 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47335 * 305.00250 * 12 11 10 14 14 C 1.53003 * 109.46940 * 185.00555 * 12 11 10 15 15 N 1.46898 * 109.46977 * 65.00649 * 12 11 10 16 16 C 1.46904 * 110.99795 * 204.99653 * 15 12 11 17 17 C 1.50697 * 109.47029 * 180.02562 * 16 15 12 18 18 O 1.21292 * 120.00515 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99860 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00258 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99879 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00693 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99397 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00320 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47227 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47010 * 119.99835 * 24 22 20 27 27 H 1.48502 * 109.47009 * 239.99795 * 24 22 20 28 28 O 1.33667 * 125.42465 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46805 * 90.02524 * 1 2 3 30 30 H 1.08999 * 109.47108 * 210.01953 * 1 2 3 31 31 H 1.08996 * 109.47586 * 330.02371 * 1 2 3 32 32 H 1.08993 * 109.46745 * 90.02813 * 5 4 3 33 33 H 1.09004 * 109.47211 * 210.02587 * 5 4 3 34 34 H 1.08996 * 109.47085 * 330.02749 * 5 4 3 35 35 H 0.97001 * 120.00141 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.47506 * 300.00048 * 10 9 7 37 37 H 1.09002 * 109.47478 * 60.00200 * 10 9 7 38 38 H 1.08994 * 109.47352 * 300.00501 * 11 10 9 39 39 H 1.08997 * 109.46673 * 60.00491 * 11 10 9 40 40 H 1.09001 * 109.47225 * 180.02562 * 14 12 11 41 41 H 1.09003 * 109.46756 * 300.00461 * 14 12 11 42 42 H 1.08999 * 109.47208 * 59.99506 * 14 12 11 43 43 H 1.00889 * 110.99983 * 328.94751 * 15 12 11 44 44 H 1.09007 * 109.47105 * 299.99687 * 16 15 12 45 45 H 1.09000 * 109.47330 * 59.99529 * 16 15 12 46 46 H 0.96998 * 120.00523 * 359.97438 * 19 17 16 47 47 H 0.97005 * 119.99782 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 -0.0048 6 6 3.5708 -0.6769 0.0003 7 6 4.7636 -1.5313 0.0003 8 8 5.8719 -1.0290 0.0009 9 7 4.6316 -2.8727 0.0006 10 6 5.8225 -3.7258 0.0010 11 6 5.3970 -5.1955 0.0019 12 6 6.6408 -6.0865 0.0018 13 1 7.2791 -5.8193 -0.8404 14 6 6.2185 -7.5517 -0.1232 15 7 7.3802 -5.8953 1.2567 16 6 8.8016 -6.2248 1.0856 17 6 9.5258 -6.0177 2.3908 18 8 8.9180 -5.6329 3.3673 19 7 10.8493 -6.2590 2.4727 20 6 11.5083 -6.0701 3.6600 21 1 10.9670 -5.7274 4.5295 22 6 12.8728 -6.3183 3.7444 23 7 13.5315 -6.7347 2.6863 24 14 13.7706 -6.0615 5.3623 25 1 12.8095 -5.5930 6.3928 26 1 14.3797 -7.3435 5.7993 27 1 14.8365 -5.0436 5.1808 28 8 2.2817 -1.0892 0.0005 29 1 -0.3633 -0.0005 -1.0278 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8901 0.5134 32 1 5.0354 1.8241 1.0215 33 1 5.5729 1.1096 -0.5176 34 1 4.4943 2.5254 -0.5223 35 1 3.7481 -3.2731 0.0012 36 1 6.4173 -3.5200 -0.8888 37 1 6.4169 -3.5195 0.8911 38 1 4.8024 -5.4011 0.8920 39 1 4.8025 -5.4021 -0.8879 40 1 7.1046 -8.1866 -0.1228 41 1 5.5802 -7.8189 0.7190 42 1 5.6698 -7.6936 -1.0542 43 1 7.2664 -4.9548 1.6037 44 1 8.8987 -7.2660 0.7779 45 1 9.2351 -5.5785 0.3224 46 1 11.3356 -6.5663 1.6918 47 1 14.4841 -6.9084 2.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714464015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:44 Heat of formation + Delta-G solvation = -60.252303 kcal Electronic energy + Delta-G solvation = -28292.090313 eV Core-core repulsion = 24090.286454 eV Total energy + Delta-G solvation = -4201.803859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.83337 -39.88961 -38.48640 -37.23273 -35.85304 -34.85374 -33.87923 -33.21494 -31.63771 -31.08835 -29.78010 -29.42911 -27.50903 -26.37776 -24.24484 -23.50592 -22.40504 -21.97652 -21.05272 -20.33504 -19.26146 -18.47876 -17.86685 -17.47026 -16.63913 -16.19918 -16.09960 -15.82240 -15.32815 -14.99238 -14.63621 -14.57197 -14.42847 -13.96202 -13.76637 -13.65260 -13.52428 -13.48005 -13.37841 -13.14191 -13.12359 -12.52571 -12.46834 -12.19874 -11.87579 -11.72561 -11.59587 -11.36264 -11.34442 -11.28828 -11.23910 -11.07158 -10.81638 -10.39746 -10.32247 -10.19947 -9.54671 -9.49689 -9.10124 -8.43008 -8.07043 -7.93547 -6.39481 -3.80048 0.42709 1.96155 1.99563 2.75480 2.78738 3.18335 3.28707 3.36284 3.45576 3.93292 4.09744 4.29744 4.32333 4.32713 4.53911 4.73835 4.78868 4.80059 4.87610 4.92313 5.11557 5.15553 5.23185 5.27169 5.35465 5.35606 5.39719 5.50085 5.54632 5.61880 5.67616 5.76754 5.80130 5.85912 5.95784 6.00206 6.03941 6.05975 6.25622 6.35340 6.95995 7.22785 7.24133 7.57844 7.65635 7.71583 8.09067 8.63738 9.20475 9.56910 10.08360 10.78377 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.001946 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.875860 B =14386.066454 C =15692.993051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.221 3.779 3 N -0.490 5.490 4 C 0.086 3.914 5 C -0.083 4.083 6 C -0.122 4.122 7 C 0.608 3.392 8 O -0.507 6.507 9 N -0.716 5.716 10 C 0.112 3.888 11 C -0.133 4.133 12 C 0.086 3.914 13 H 0.046 0.954 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 O -0.190 6.190 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.405 0.595 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.349 0.651 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.971 8.703 -12.132 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.015 3.985 3 N -0.221 5.221 4 C -0.038 4.038 5 C -0.140 4.140 6 C -0.177 4.177 7 C 0.393 3.607 8 O -0.384 6.384 9 N -0.367 5.367 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.024 4.024 13 H 0.064 0.936 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 O -0.077 6.077 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.239 0.761 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.778 9.187 -11.233 28.714 hybrid contribution 0.947 -0.299 -0.234 1.021 sum -23.831 8.887 -11.467 27.899 Atomic orbital electron populations 1.20400 0.80635 1.05707 1.05177 1.26584 0.96689 0.78611 0.96608 1.70371 1.01650 1.29944 1.20101 1.22117 0.93475 0.91305 0.96905 1.20432 0.92116 0.97453 1.04034 1.22862 0.82274 0.95209 1.17316 1.16288 0.85485 0.81639 0.77278 1.90907 1.23634 1.73756 1.50120 1.45841 1.10833 1.05318 1.74665 1.21600 0.86999 0.89271 1.03260 1.21992 0.99023 0.92429 1.03659 1.21452 0.93535 0.95730 0.91701 0.93631 1.21785 1.01698 0.95105 1.01117 1.60203 1.09445 1.33515 1.26960 1.21729 0.88292 1.01672 0.96598 1.19816 0.82997 0.84806 0.89745 1.90523 1.66693 1.51257 1.38254 1.41869 1.06477 1.58828 1.12915 1.19756 0.91071 1.41980 0.89950 0.87878 1.25263 0.96677 0.97182 0.98893 1.69623 1.09650 1.46019 1.29044 0.85800 0.79179 0.77854 0.81513 1.19224 1.20760 1.20777 1.84422 1.16175 1.37371 1.69782 0.88332 0.88809 0.87623 0.89706 0.88502 0.90371 0.76053 0.90880 0.90370 0.89903 0.90515 0.92327 0.91833 0.92867 0.82968 0.89559 0.93792 0.77471 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.22 1.88 8.32 -12.80 -0.11 1.77 16 3 N -0.49 -5.38 11.26 -7.07 -0.08 -5.46 16 4 C 0.09 1.00 7.16 -82.46 -0.59 0.41 16 5 C -0.08 -0.84 9.88 36.01 0.36 -0.48 16 6 C -0.12 -1.40 7.18 -36.84 -0.26 -1.67 16 7 C 0.61 7.53 7.79 -12.83 -0.10 7.43 16 8 O -0.51 -7.73 14.79 5.20 0.08 -7.65 16 9 N -0.72 -7.11 5.55 -61.61 -0.34 -7.45 16 10 C 0.11 1.18 5.50 -4.04 -0.02 1.16 16 11 C -0.13 -1.20 4.92 -26.73 -0.13 -1.33 16 12 C 0.09 0.99 2.65 -67.71 -0.18 0.81 16 13 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 14 C -0.14 -1.47 9.42 37.16 0.35 -1.12 16 15 N -0.67 -10.55 5.93 -107.99 -0.64 -11.19 16 16 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 17 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 18 O -0.58 -16.11 15.78 5.55 0.09 -16.03 16 19 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 O -0.19 -1.83 10.57 4.42 0.05 -1.78 16 29 H 0.10 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.06 6.46 -51.93 -0.34 0.72 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.05 8.27 -40.82 -0.34 2.71 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.01 6.43 -51.93 -0.33 0.67 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.35 5.82 6.17 -39.30 -0.24 5.58 16 44 H 0.09 1.41 7.44 -51.92 -0.39 1.03 16 45 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 46 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -35.26 398.23 -6.78 -42.04 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.91 Total: 13.46 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -0.67 Total: 10.39 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.40 Total: -62.80 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.21 Total: -25.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.26 -6.78 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714464015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.213 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds