Wall clock time and date at job start Tue Mar 31 2020 21:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30617 * 125.41596 * 2 1 4 4 C 1.33697 * 108.99283 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.27743 * 180.02562 * 4 3 2 6 6 C 1.36348 * 107.44933 * 359.97438 * 4 3 2 7 7 C 1.46725 * 126.64178 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99862 * 352.48890 * 7 6 4 9 9 N 1.34777 * 119.99762 * 172.48839 * 7 6 4 10 10 C 1.46503 * 120.00156 * 3.71005 * 9 7 6 11 11 C 1.46498 * 119.99676 * 183.70830 * 9 7 6 12 12 H 1.08994 * 109.47423 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47132 * 239.99796 * 11 9 7 14 14 C 1.53006 * 109.46800 * 120.00068 * 11 9 7 15 15 N 1.46897 * 109.47235 * 304.99859 * 14 11 9 16 16 C 1.46897 * 111.00049 * 180.02562 * 15 14 11 17 17 C 1.50696 * 109.47107 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00313 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99919 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00099 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00266 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00060 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99723 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00016 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46761 * 90.00057 * 24 22 20 26 26 H 1.48496 * 109.47091 * 210.00146 * 24 22 20 27 27 H 1.48498 * 109.47173 * 330.00439 * 24 22 20 28 28 O 1.33654 * 125.42207 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46562 * 269.97024 * 1 2 3 30 30 H 1.08995 * 109.47598 * 29.97355 * 1 2 3 31 31 H 1.08995 * 109.46931 * 149.97250 * 1 2 3 32 32 H 1.09010 * 109.46996 * 269.97319 * 5 4 3 33 33 H 1.09003 * 109.47096 * 29.96998 * 5 4 3 34 34 H 1.08993 * 109.47556 * 149.97401 * 5 4 3 35 35 H 1.09001 * 109.46973 * 83.96141 * 10 9 7 36 36 H 1.09001 * 109.46988 * 203.96222 * 10 9 7 37 37 H 1.09001 * 109.46892 * 323.96306 * 10 9 7 38 38 H 1.08995 * 109.47381 * 179.97438 * 13 11 9 39 39 H 1.08994 * 109.47408 * 300.00549 * 13 11 9 40 40 H 1.09007 * 109.47014 * 60.00512 * 13 11 9 41 41 H 1.09004 * 109.46915 * 65.00454 * 14 11 9 42 42 H 1.09005 * 109.46852 * 184.99445 * 14 11 9 43 43 H 1.00902 * 110.99885 * 303.95497 * 15 14 11 44 44 H 1.09003 * 109.46937 * 300.00047 * 16 15 14 45 45 H 1.09001 * 109.47076 * 59.99499 * 16 15 14 46 46 H 0.97008 * 120.00028 * 0.02562 * 19 17 16 47 47 H 0.97003 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6865 -0.0006 5 6 4.7451 1.5996 -0.0002 6 6 3.5708 -0.6768 -0.0003 7 6 4.7636 -1.5312 -0.0013 8 8 5.8665 -1.0362 -0.1402 9 7 4.6377 -2.8644 0.1516 10 6 3.3061 -3.4693 0.2373 11 6 5.8323 -3.7085 0.2322 12 1 6.7233 -3.0859 0.1506 13 6 5.8150 -4.7271 -0.9093 14 6 5.8466 -4.4453 1.5731 15 7 5.7425 -3.4715 2.6680 16 6 5.7538 -4.1444 3.9738 17 6 5.6462 -3.1159 5.0698 18 8 5.5684 -1.9381 4.7908 19 7 5.6366 -3.5047 6.3603 20 6 5.5382 -2.5691 7.3574 21 1 5.4689 -1.5203 7.1090 22 6 5.5288 -2.9699 8.6879 23 7 5.4350 -2.0730 9.6437 24 14 5.6494 -4.7838 9.1177 25 1 7.0772 -5.1619 9.2724 26 1 4.9288 -5.0398 10.3906 27 1 5.0383 -5.5915 8.0317 28 8 2.2817 -1.0892 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 5.0342 1.8201 -1.0279 33 1 4.4948 2.5277 0.5139 34 1 5.5734 1.1118 0.5134 35 1 2.9179 -3.6369 -0.7674 36 1 3.3727 -4.4210 0.7646 37 1 2.6372 -2.8001 0.7784 38 1 6.7040 -5.3548 -0.8497 39 1 4.9240 -5.3496 -0.8273 40 1 5.8048 -4.2021 -1.8646 41 1 5.0032 -5.1343 1.6180 42 1 6.7776 -5.0039 1.6708 43 1 6.4774 -2.7826 2.6103 44 1 4.9099 -4.8316 4.0357 45 1 6.6843 -4.7006 4.0879 46 1 5.6992 -4.4467 6.5835 47 1 5.4288 -2.3528 10.5724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714560994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:12 Heat of formation + Delta-G solvation = -66.198076 kcal Electronic energy + Delta-G solvation = -30027.301941 eV Core-core repulsion = 25825.240254 eV Total energy + Delta-G solvation = -4202.061688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.52363 -40.99752 -40.28000 -38.12369 -36.59372 -36.12121 -35.53374 -33.89294 -33.75752 -32.59181 -30.31283 -29.12543 -28.56815 -27.75341 -26.61877 -24.61140 -23.73457 -22.90846 -21.93556 -21.33522 -20.71874 -20.17883 -18.69608 -18.20038 -17.99329 -17.60470 -17.01135 -16.77464 -16.53130 -16.32492 -15.66867 -15.48572 -15.39510 -15.07341 -14.84461 -14.68259 -14.44244 -14.33706 -14.15065 -14.04524 -13.96306 -13.87684 -13.50288 -13.35091 -13.22949 -13.14910 -13.08595 -12.87405 -12.79525 -12.55040 -12.43505 -12.04625 -11.98848 -11.83853 -11.80087 -11.53475 -11.20855 -10.48194 -10.27287 -10.02705 -9.56402 -9.32327 -8.43152 -6.04733 -0.25791 1.28510 1.28903 1.32175 1.34678 1.43851 1.88998 1.94182 2.09362 2.21835 2.70359 2.89650 3.13115 3.34910 3.51707 3.62812 3.83613 4.09281 4.17881 4.18517 4.26450 4.31075 4.34022 4.44238 4.52340 4.56443 4.60255 4.62553 4.63528 4.67155 4.70650 4.76032 4.80842 4.83540 4.96133 5.07142 5.10447 5.27406 5.30478 5.50021 5.53383 5.87934 6.03472 6.16279 6.27485 6.51150 6.57908 6.86217 6.93251 7.37501 7.95538 8.74887 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.003050 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.392646 B = 9178.957482 C =10411.776979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.218 3.782 3 N -0.520 5.520 4 C 0.061 3.939 5 C -0.074 4.074 6 C -0.131 4.131 7 C 0.606 3.394 8 O -0.552 6.552 9 N -0.578 5.578 10 C 0.080 3.920 11 C 0.135 3.865 12 H 0.080 0.920 13 C -0.147 4.147 14 C 0.050 3.950 15 N -0.686 5.686 16 C 0.066 3.934 17 C 0.445 3.555 18 O -0.618 6.618 19 N -0.589 5.589 20 C -0.331 4.331 21 H 0.050 0.950 22 C -0.016 4.016 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.229 1.229 28 O -0.178 6.178 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.336 0.664 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.391 0.609 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 -11.579 -24.488 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.013 3.987 3 N -0.250 5.250 4 C -0.063 4.063 5 C -0.131 4.131 6 C -0.186 4.186 7 C 0.393 3.607 8 O -0.433 6.433 9 N -0.308 5.308 10 C -0.062 4.062 11 C 0.032 3.968 12 H 0.098 0.902 13 C -0.205 4.205 14 C -0.079 4.079 15 N -0.318 5.318 16 C -0.067 4.067 17 C 0.233 3.767 18 O -0.502 6.502 19 N -0.231 5.231 20 C -0.460 4.460 21 H 0.068 0.932 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.152 1.152 28 O -0.066 6.066 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.097 0.903 46 H 0.226 0.774 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.941 -9.957 -24.565 27.670 hybrid contribution 1.287 -0.841 1.183 1.940 sum -6.654 -10.798 -23.382 26.600 Atomic orbital electron populations 1.20721 0.77037 1.07391 1.06491 1.27761 0.98474 0.78381 0.94100 1.70343 1.01572 1.31352 1.21761 1.22347 0.94222 0.91988 0.97719 1.20305 0.91445 0.97329 1.04045 1.22840 0.83130 0.95047 1.17593 1.16488 0.85036 0.82249 0.76886 1.90793 1.25369 1.74152 1.53002 1.47547 1.09002 1.04723 1.69518 1.22010 0.81738 0.99900 1.02570 1.21343 0.87466 0.92340 0.95643 0.90212 1.22017 1.04438 0.98003 0.96057 1.22506 1.02911 0.93829 0.88620 1.60032 1.54696 1.16004 1.01069 1.21621 1.03881 0.93978 0.87177 1.21107 0.81160 0.90412 0.83992 1.90568 1.55011 1.21312 1.83339 1.42007 1.67453 1.08423 1.05249 1.18985 1.50224 0.90256 0.86584 0.93219 1.26173 0.95951 1.05138 0.94190 1.69818 1.50046 1.36871 1.00880 0.85317 0.79877 0.76380 0.79610 1.18121 1.19946 1.15186 1.84648 1.15564 1.36632 1.69780 0.87187 0.86455 0.86195 0.88696 0.89944 0.90683 0.90779 0.88473 0.91949 0.89231 0.90257 0.92646 0.88400 0.91630 0.84592 0.86443 0.90327 0.77370 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.22 5.12 8.32 88.29 0.73 5.85 16 3 N -0.52 -15.48 11.26 -291.07 -3.28 -18.76 16 4 C 0.06 1.97 7.16 41.83 0.30 2.27 16 5 C -0.07 -2.17 9.80 71.23 0.70 -1.48 16 6 C -0.13 -4.12 6.78 24.05 0.16 -3.96 16 7 C 0.61 19.20 7.64 86.46 0.66 19.86 16 8 O -0.55 -20.12 14.24 -4.29 -0.06 -20.18 16 9 N -0.58 -13.92 2.48 -827.25 -2.06 -15.98 16 10 C 0.08 1.45 8.67 127.77 1.11 2.56 16 11 C 0.13 2.68 2.87 44.99 0.13 2.80 16 12 H 0.08 1.99 6.90 -2.39 -0.02 1.97 16 13 C -0.15 -1.77 9.19 71.98 0.66 -1.11 16 14 C 0.05 0.94 4.95 86.31 0.43 1.36 16 15 N -0.69 -20.38 5.85 -517.92 -3.03 -23.41 16 16 C 0.07 1.96 6.17 85.56 0.53 2.49 16 17 C 0.45 20.54 7.82 87.66 0.69 21.23 16 18 O -0.62 -35.92 15.78 -3.04 -0.05 -35.97 16 19 N -0.59 -28.13 5.09 -306.99 -1.56 -29.69 16 20 C -0.33 -19.83 10.16 84.04 0.85 -18.97 16 21 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.94 -57.22 13.96 21.66 0.30 -56.92 16 24 Si 0.97 38.74 27.74 68.60 1.90 40.64 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 28 O -0.18 -4.60 7.51 -7.04 -0.05 -4.65 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.48 6.65 -2.39 -0.02 2.47 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.36 6.54 -2.39 -0.02 1.34 16 37 H 0.06 1.40 5.43 -2.39 -0.01 1.39 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.69 7.67 -2.39 -0.02 0.68 16 40 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.10 1.41 6.87 -2.39 -0.02 1.39 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.34 11.88 8.43 -89.69 -0.76 11.13 16 44 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.39 15.17 5.76 -92.70 -0.53 14.64 16 47 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -89.79 389.68 -0.05 -89.83 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.33 Total: 42.51 kcal Atomic # 6 Polarization: 24.40 SS G_CDS: 8.16 Total: 32.57 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -9.62 Total: -144.76 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -0.16 Total: -60.80 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.64 kcal Total: -89.79 -0.05 -89.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714560994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -89.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds