Wall clock time and date at job start Tue Mar 31 2020 21:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30625 * 125.42366 * 2 1 4 4 C 1.33686 * 108.99612 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.27412 * 180.02562 * 4 3 2 6 6 C 1.36346 * 107.45573 * 359.97438 * 4 3 2 7 7 C 1.46718 * 126.64684 * 179.97438 * 6 4 3 8 8 O 1.21690 * 120.00024 * 352.60750 * 7 6 4 9 9 N 1.34777 * 120.00241 * 172.60282 * 7 6 4 10 10 C 1.46493 * 119.99845 * 3.64061 * 9 7 6 11 11 C 1.46502 * 119.99852 * 183.63517 * 9 7 6 12 12 H 1.08997 * 109.47186 * 0.02562 * 11 9 7 13 13 C 1.53008 * 109.46435 * 120.00217 * 11 9 7 14 14 C 1.52998 * 109.47141 * 240.00049 * 11 9 7 15 15 N 1.46898 * 109.46851 * 55.00304 * 14 11 9 16 16 C 1.46903 * 110.99731 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47076 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00071 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00140 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00042 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99797 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99912 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00028 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00133 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46923 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47268 * 119.99421 * 24 22 20 27 27 H 1.48504 * 109.46808 * 239.99954 * 24 22 20 28 28 O 1.33664 * 125.42470 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46778 * 90.02659 * 1 2 3 30 30 H 1.08998 * 109.46912 * 210.02604 * 1 2 3 31 31 H 1.08994 * 109.47382 * 330.03094 * 1 2 3 32 32 H 1.08999 * 109.47259 * 89.96892 * 5 4 3 33 33 H 1.09004 * 109.47370 * 209.97208 * 5 4 3 34 34 H 1.08998 * 109.47207 * 329.97212 * 5 4 3 35 35 H 1.09003 * 109.47336 * 83.96206 * 10 9 7 36 36 H 1.09003 * 109.47302 * 203.96407 * 10 9 7 37 37 H 1.09000 * 109.47308 * 323.96077 * 10 9 7 38 38 H 1.08997 * 109.46956 * 60.00443 * 13 11 9 39 39 H 1.09003 * 109.46598 * 179.97438 * 13 11 9 40 40 H 1.08992 * 109.47336 * 299.99586 * 13 11 9 41 41 H 1.08997 * 109.46875 * 175.00584 * 14 11 9 42 42 H 1.08999 * 109.46984 * 295.00477 * 14 11 9 43 43 H 1.00899 * 111.00292 * 56.04679 * 15 14 11 44 44 H 1.08996 * 109.47641 * 300.00351 * 16 15 14 45 45 H 1.09002 * 109.47127 * 60.00585 * 16 15 14 46 46 H 0.97003 * 119.99848 * 0.02562 * 19 17 16 47 47 H 0.97004 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 0.0013 6 6 3.5709 -0.6769 0.0015 7 6 4.7636 -1.5313 0.0019 8 8 5.8668 -1.0362 -0.1343 9 7 4.6373 -2.8646 0.1531 10 6 3.3057 -3.4694 0.2371 11 6 5.8318 -3.7090 0.2333 12 1 6.7229 -3.0865 0.1531 13 6 5.8451 -4.4475 1.5734 14 6 5.8151 -4.7262 -0.9094 15 7 5.6816 -4.0207 -2.1909 16 6 5.6625 -4.9678 -3.3138 17 6 5.5241 -4.2091 -4.6085 18 8 5.4493 -2.9986 -4.5971 19 7 5.4845 -4.8757 -5.7792 20 6 5.3592 -4.1855 -6.9572 21 1 5.2917 -3.1076 -6.9469 22 6 5.3179 -4.8728 -8.1640 23 7 5.3994 -6.1843 -8.1765 24 14 5.1478 -3.9323 -9.7691 25 1 5.0766 -2.4765 -9.4847 26 1 6.3227 -4.2113 -10.6332 27 1 3.9082 -4.3615 -10.4652 28 8 2.2818 -1.0892 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 5.0334 1.8200 1.0291 33 1 5.5740 1.1117 -0.5118 34 1 4.4953 2.5276 -0.5129 35 1 2.9181 -3.6358 -0.7681 36 1 3.3717 -4.4218 0.7633 37 1 2.6365 -2.8008 0.7785 38 1 4.9540 -5.0700 1.6539 39 1 6.7336 -5.0761 1.6329 40 1 5.8571 -3.7229 2.3874 41 1 6.7447 -5.2952 -0.9030 42 1 4.9725 -5.4053 -0.7790 43 1 6.4159 -3.3383 -2.3063 44 1 6.5912 -5.5381 -3.3239 45 1 4.8190 -5.6488 -3.2003 46 1 5.5448 -5.8438 -5.7884 47 1 5.3702 -6.6641 -9.0190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714560998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:16 Heat of formation + Delta-G solvation = -70.700239 kcal Electronic energy + Delta-G solvation = -29905.519732 eV Core-core repulsion = 25703.262816 eV Total energy + Delta-G solvation = -4202.256916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.52628 -40.98724 -40.14211 -38.10556 -36.58804 -36.10016 -35.51581 -33.87181 -33.30241 -32.56996 -30.29934 -29.00240 -28.56032 -27.77619 -26.69307 -24.70616 -23.74085 -22.90483 -21.93867 -21.18538 -20.58214 -19.91626 -18.68899 -18.20311 -18.02244 -17.58983 -16.94234 -16.66933 -16.48137 -16.30322 -15.92162 -15.42925 -15.36189 -15.11281 -14.97557 -14.64122 -14.36739 -14.19987 -14.10006 -14.01330 -13.86163 -13.55453 -13.49456 -13.39640 -13.17802 -13.11880 -12.97673 -12.90778 -12.78904 -12.57646 -12.43289 -12.14635 -12.04706 -11.85009 -11.79012 -11.54646 -11.17357 -10.40051 -10.04242 -10.01475 -9.58305 -9.31451 -8.49841 -5.98559 -0.26107 1.27006 1.33310 1.33761 1.38986 1.53291 1.97899 2.02328 2.02843 2.26842 2.87734 2.91170 3.17172 3.43916 3.53450 3.63416 3.83913 4.11170 4.18119 4.25973 4.29572 4.32598 4.34059 4.48087 4.53044 4.55938 4.60302 4.63427 4.64820 4.67538 4.70173 4.77468 4.82542 4.84995 4.94422 5.05018 5.11506 5.27126 5.31713 5.37890 5.52813 5.86398 6.08915 6.16928 6.29530 6.51195 6.57694 6.94214 7.10203 7.53182 8.09815 8.67777 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.002937 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.364039 B = 9532.174700 C =10914.845878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.218 3.782 3 N -0.517 5.517 4 C 0.064 3.936 5 C -0.078 4.078 6 C -0.133 4.133 7 C 0.604 3.396 8 O -0.551 6.551 9 N -0.578 5.578 10 C 0.078 3.922 11 C 0.136 3.864 12 H 0.081 0.919 13 C -0.148 4.148 14 C 0.051 3.949 15 N -0.681 5.681 16 C 0.069 3.931 17 C 0.435 3.565 18 O -0.627 6.627 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.277 1.277 26 H -0.269 1.269 27 H -0.268 1.268 28 O -0.181 6.181 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.336 0.664 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 1.451 23.325 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.013 3.987 3 N -0.248 5.248 4 C -0.060 4.060 5 C -0.135 4.135 6 C -0.188 4.188 7 C 0.392 3.608 8 O -0.432 6.432 9 N -0.308 5.308 10 C -0.063 4.063 11 C 0.033 3.967 12 H 0.099 0.901 13 C -0.207 4.207 14 C -0.078 4.078 15 N -0.313 5.313 16 C -0.064 4.064 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.202 1.202 26 H -0.194 1.194 27 H -0.193 1.193 28 O -0.069 6.069 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.154 0.846 44 H 0.085 0.915 45 H 0.125 0.875 46 H 0.231 0.769 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.949 2.892 23.150 24.647 hybrid contribution 1.207 -0.850 -1.338 1.992 sum -6.743 2.043 21.812 22.921 Atomic orbital electron populations 1.20721 0.77112 1.07384 1.06484 1.27761 0.98462 0.78362 0.94094 1.70352 1.01525 1.31158 1.21764 1.22378 0.94293 0.91786 0.97524 1.20379 0.91523 0.97421 1.04176 1.22817 0.83009 0.95139 1.17845 1.16514 0.85192 0.82305 0.76759 1.90787 1.25471 1.74358 1.52603 1.47539 1.08899 1.04689 1.69650 1.22021 0.81872 1.00241 1.02214 1.21328 0.87573 0.91690 0.96126 0.90077 1.22045 1.04448 1.00521 0.93638 1.22490 1.02470 0.95587 0.87297 1.60037 1.54363 1.15907 1.00995 1.21520 1.02904 0.94074 0.87875 1.20984 0.82259 0.88263 0.86214 1.90518 1.56632 1.16383 1.87796 1.41915 1.64597 1.09527 1.04897 1.19658 1.49488 0.92720 0.84577 0.90825 1.26007 0.96273 0.96611 1.02154 1.69670 1.50143 1.07052 1.29065 0.84902 0.78525 0.77875 0.77206 1.20193 1.19369 1.19295 1.84656 1.15700 1.36808 1.69740 0.87219 0.86360 0.86294 0.88729 0.90190 0.89646 0.93412 0.87489 0.90330 0.90210 0.89236 0.92248 0.92099 0.88862 0.84608 0.91468 0.87462 0.76881 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.22 4.97 8.32 88.29 0.73 5.70 16 3 N -0.52 -14.62 11.26 -291.06 -3.28 -17.89 16 4 C 0.06 1.96 7.16 41.83 0.30 2.26 16 5 C -0.08 -2.10 9.96 71.24 0.71 -1.39 16 6 C -0.13 -4.13 6.78 24.05 0.16 -3.97 16 7 C 0.60 19.43 7.64 86.46 0.66 20.10 16 8 O -0.55 -20.43 14.11 -4.32 -0.06 -20.49 16 9 N -0.58 -14.56 2.48 -827.26 -2.06 -16.61 16 10 C 0.08 1.53 8.77 127.77 1.12 2.65 16 11 C 0.14 2.90 2.87 44.99 0.13 3.03 16 12 H 0.08 2.12 6.90 -2.39 -0.02 2.10 16 13 C -0.15 -1.93 9.18 71.98 0.66 -1.27 16 14 C 0.05 1.10 4.98 86.30 0.43 1.53 16 15 N -0.68 -22.41 5.85 -517.94 -3.03 -25.44 16 16 C 0.07 2.37 6.17 85.56 0.53 2.90 16 17 C 0.44 21.51 7.82 87.66 0.69 22.19 16 18 O -0.63 -36.94 15.78 -3.07 -0.05 -36.99 16 19 N -0.57 -30.07 5.29 -306.98 -1.62 -31.69 16 20 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 21 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 24 Si 0.99 43.84 29.55 68.60 2.03 45.86 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 O -0.18 -4.69 7.51 -7.11 -0.05 -4.75 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.47 6.34 -2.38 -0.02 2.45 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.34 6.44 -2.39 -0.02 1.32 16 37 H 0.08 1.48 5.43 -2.39 -0.01 1.46 16 38 H 0.08 0.77 6.67 -2.39 -0.02 0.75 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.69 7.84 -2.39 -0.02 1.67 16 43 H 0.34 12.82 8.43 -89.69 -0.76 12.07 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -81.13 392.52 -0.15 -81.29 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.47 Total: 41.37 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 8.15 Total: 34.98 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -9.70 Total: -141.27 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -0.16 Total: -62.23 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -81.13 -0.15 -81.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714560998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.585 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds