Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46603 * 2 1 4 4 C 1.35312 * 126.66609 * 90.00190 * 3 2 1 5 5 C 1.42267 * 103.92087 * 180.20111 * 4 3 2 6 6 C 1.48329 * 126.93870 * 179.75551 * 5 4 3 7 7 O 1.21498 * 120.00270 * 353.39454 * 6 5 4 8 8 N 1.34783 * 119.99971 * 173.39401 * 6 5 4 9 9 C 1.46500 * 120.00091 * 3.63184 * 8 6 5 10 10 C 1.46501 * 119.99923 * 183.63197 * 8 6 5 11 11 H 1.09006 * 109.46943 * 0.02562 * 10 8 6 12 12 C 1.53002 * 109.47011 * 119.99887 * 10 8 6 13 13 C 1.52995 * 109.47165 * 240.00029 * 10 8 6 14 14 N 1.46901 * 109.47278 * 55.00290 * 13 10 8 15 15 C 1.46894 * 111.00118 * 180.02562 * 14 13 10 16 16 C 1.50698 * 109.47172 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99928 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00250 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00164 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99987 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00272 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99794 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47076 * 90.00381 * 23 21 19 25 25 H 1.48496 * 109.47082 * 210.00167 * 23 21 19 26 26 H 1.48496 * 109.47296 * 330.00294 * 23 21 19 27 27 N 1.30983 * 106.12312 * 359.63356 * 5 4 3 28 28 O 1.20900 * 111.43888 * 0.39214 * 27 5 4 29 29 H 1.08996 * 109.47481 * 60.00494 * 1 2 3 30 30 H 1.09004 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47695 * 300.00103 * 1 2 3 32 32 H 1.08998 * 109.47211 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.46805 * 119.99291 * 2 1 3 34 34 H 1.07997 * 128.03939 * 359.93790 * 4 3 2 35 35 H 1.09001 * 109.46872 * 84.07426 * 9 8 6 36 36 H 1.08993 * 109.46899 * 204.07379 * 9 8 6 37 37 H 1.08997 * 109.46878 * 324.07664 * 9 8 6 38 38 H 1.09005 * 109.47114 * 179.97438 * 12 10 8 39 39 H 1.08999 * 109.47461 * 299.99953 * 12 10 8 40 40 H 1.08997 * 109.47318 * 60.00312 * 12 10 8 41 41 H 1.08999 * 109.47061 * 175.00029 * 13 10 8 42 42 H 1.08994 * 109.47294 * 294.99729 * 13 10 8 43 43 H 1.00899 * 110.99859 * 56.04329 * 14 13 10 44 44 H 1.09002 * 109.46988 * 300.00041 * 15 14 13 45 45 H 1.08998 * 109.47430 * 59.99834 * 15 14 13 46 46 H 0.96999 * 119.99866 * 359.97438 * 18 16 15 47 47 H 0.96993 * 120.00012 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3015 2.1827 1.0854 5 6 2.7342 3.4214 0.5353 6 6 3.1542 4.6310 1.2841 7 8 3.0368 4.6686 2.4928 8 7 3.6661 5.6885 0.6235 9 6 3.7342 5.6751 -0.8398 10 6 4.1546 6.8512 1.3689 11 1 4.0232 6.6793 2.4373 12 6 5.6390 7.0644 1.0660 13 6 3.3652 8.0934 0.9509 14 7 1.9286 7.8439 1.1302 15 6 1.1375 9.0176 0.7373 16 6 -0.3276 8.7246 0.9340 17 8 -0.6782 7.6441 1.3592 18 7 -1.2484 9.6627 0.6364 19 6 -2.5813 9.3959 0.8149 20 1 -2.8935 8.4338 1.1935 21 6 -3.5306 10.3633 0.5086 22 7 -4.8082 10.1074 0.6791 23 14 -2.9905 12.0276 -0.1456 24 1 -2.9242 11.9788 -1.6283 25 1 -3.9679 13.0645 0.2723 26 1 -1.6503 12.3624 0.3991 27 7 2.6892 3.2771 -0.7657 28 8 2.2994 2.1752 -1.0750 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 2.2058 1.9144 2.1271 35 1 2.7770 5.9961 -1.2510 36 1 4.5188 6.3541 -1.1732 37 1 3.9571 4.6652 -1.1840 38 1 6.0024 7.9299 1.6202 39 1 6.2015 6.1795 1.3638 40 1 5.7708 7.2362 -0.0023 41 1 3.6666 8.9400 1.5677 42 1 3.5672 8.3168 -0.0966 43 1 1.7247 7.5715 2.0801 44 1 1.4235 9.8710 1.3522 45 1 1.3241 9.2470 -0.3118 46 1 -0.9680 10.5266 0.2960 47 1 -5.4707 10.7828 0.4657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715371275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = 7.649520 kcal Electronic energy + Delta-G solvation = -29556.658147 eV Core-core repulsion = 25357.798732 eV Total energy + Delta-G solvation = -4198.859415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.15323 -39.99763 -38.43096 -36.90742 -35.16573 -34.82778 -34.04594 -33.69368 -31.72011 -31.53250 -30.25460 -27.75766 -26.99806 -25.36898 -24.77223 -24.30887 -23.08085 -22.58116 -20.90279 -19.42963 -19.12737 -18.27245 -17.91043 -17.47607 -17.07522 -16.51788 -15.85297 -15.47828 -15.28165 -14.88631 -14.82378 -14.58270 -14.21968 -14.05461 -13.88266 -13.60840 -13.35853 -13.22228 -13.03785 -12.88882 -12.71765 -12.60288 -12.43764 -12.18749 -12.05860 -12.01701 -11.67047 -11.59311 -11.52256 -11.15806 -11.13313 -10.94039 -10.58181 -10.50270 -10.15372 -9.95373 -9.57572 -9.54721 -8.71795 -8.51015 -8.16323 -8.09217 -6.28629 -3.79832 1.06592 1.58610 2.68003 2.87707 3.03611 3.07971 3.15803 3.19633 3.77618 3.85641 4.06620 4.12386 4.24932 4.65511 4.71930 4.84183 4.85053 4.88272 4.91783 4.97735 5.08685 5.14228 5.15713 5.24188 5.34430 5.37403 5.47655 5.49129 5.49688 5.63377 5.64561 5.67196 5.76040 5.82138 5.83633 5.89491 5.91724 5.96316 5.98197 6.47484 7.11904 7.25133 7.59688 7.61702 7.87664 8.11836 8.17469 8.62936 8.97947 9.45178 9.86487 10.84711 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.002930 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.855941 B = 9552.809763 C =11566.797067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.040 4.040 3 C -0.032 4.032 4 C -0.182 4.182 5 C -0.013 4.013 6 C 0.604 3.396 7 O -0.526 6.526 8 N -0.577 5.577 9 C 0.075 3.925 10 C 0.138 3.862 11 H 0.103 0.897 12 C -0.159 4.159 13 C 0.049 3.951 14 N -0.664 5.664 15 C 0.050 3.950 16 C 0.450 3.550 17 O -0.561 6.561 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.327 5.327 28 O 0.113 5.887 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.179 0.821 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.353 0.647 44 H 0.044 0.956 45 H 0.085 0.915 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.650 -13.455 -3.761 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 C -0.095 4.095 4 C -0.204 4.204 5 C -0.172 4.172 6 C 0.390 3.610 7 O -0.401 6.401 8 N -0.309 5.309 9 C -0.068 4.068 10 C 0.034 3.966 11 H 0.121 0.879 12 C -0.218 4.218 13 C -0.082 4.082 14 N -0.297 5.297 15 C -0.083 4.083 16 C 0.236 3.764 17 O -0.443 6.443 18 N -0.232 5.232 19 C -0.433 4.433 20 H 0.136 0.864 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 N -0.030 5.030 28 O 0.041 5.959 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.196 0.804 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.173 0.827 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.344 -13.539 -4.435 25.662 hybrid contribution 0.156 1.933 0.785 2.092 sum 21.500 -11.606 -3.650 24.704 Atomic orbital electron populations 1.21829 0.93178 1.02804 1.03416 1.20144 0.96907 0.86080 1.04732 1.24488 1.02320 0.97159 0.85517 1.22401 1.04928 0.91613 1.01464 1.23423 1.05986 0.97668 0.90083 1.16814 0.77221 0.80951 0.86047 1.90773 1.54827 1.81403 1.13105 1.47359 1.60244 1.15767 1.07530 1.22048 1.02570 1.03372 0.78817 1.21173 0.92698 0.84547 0.98152 0.87946 1.22108 0.94728 1.02495 1.02419 1.22357 0.88867 0.95431 1.01539 1.59983 1.03061 1.34752 1.31915 1.21692 0.93406 0.91836 1.01394 1.19723 0.86529 0.85787 0.84389 1.90586 1.81144 1.23912 1.48608 1.42201 1.07075 1.14063 1.59850 1.19432 0.78976 1.03338 1.41505 0.86356 1.25034 0.95058 0.98281 0.97827 1.69621 0.99850 1.35030 1.47762 0.86662 0.78655 0.84162 0.79836 1.19629 1.20202 1.19570 1.74311 1.14310 0.98840 1.15524 1.84777 1.59971 1.17545 1.33646 0.91809 0.91186 0.91733 0.89246 0.88388 0.80405 0.91564 0.91300 0.89748 0.91052 0.91962 0.91962 0.94209 0.90731 0.82734 0.93853 0.89651 0.79750 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.04 -0.24 6.50 -27.88 -0.18 -0.42 16 3 C -0.03 -0.32 6.73 -35.35 -0.24 -0.55 16 4 C -0.18 -2.18 10.93 -39.08 -0.43 -2.61 16 5 C -0.01 -0.19 6.87 -82.53 -0.57 -0.75 16 6 C 0.60 9.62 7.70 -12.10 -0.09 9.53 16 7 O -0.53 -9.67 16.29 5.37 0.09 -9.59 16 8 N -0.58 -7.72 2.49 -174.87 -0.43 -8.16 16 9 C 0.07 0.87 8.78 59.85 0.53 1.39 16 10 C 0.14 1.60 2.87 -67.93 -0.20 1.41 16 11 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 12 C -0.16 -1.31 9.18 37.16 0.34 -0.97 16 13 C 0.05 0.58 4.98 -3.83 -0.02 0.56 16 14 N -0.66 -11.08 5.85 -115.07 -0.67 -11.76 16 15 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 16 C 0.45 10.70 7.82 -10.99 -0.09 10.62 16 17 O -0.56 -15.93 15.78 5.55 0.09 -15.84 16 18 N -0.59 -14.60 5.09 -10.96 -0.06 -14.66 16 19 C -0.30 -8.86 10.16 -14.93 -0.15 -9.01 16 20 H 0.12 3.95 7.39 -52.49 -0.39 3.57 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.30 13.96 55.50 0.77 -25.53 16 23 Si 0.88 19.77 27.74 -169.99 -4.71 15.06 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 27 N -0.33 -4.43 8.71 33.29 0.29 -4.14 16 28 O 0.11 1.34 11.18 17.26 0.19 1.53 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 37 H 0.08 0.98 5.38 -51.93 -0.28 0.70 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.45 6.67 -51.93 -0.35 0.11 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 43 H 0.35 6.55 8.43 -39.29 -0.33 6.22 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.37 7.98 5.76 -40.82 -0.24 7.75 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -36.57 392.62 -6.30 -42.87 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.92 Total: 13.88 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.85 Total: 10.42 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.10 Total: -64.24 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.37 Total: -23.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.57 -6.30 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715371275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.517 kcal (2) G-P(sol) polarization free energy of solvation -36.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds