Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46603 * 2 1 4 4 C 1.35312 * 126.66609 * 90.00190 * 3 2 1 5 5 C 1.42267 * 103.92087 * 180.20111 * 4 3 2 6 6 C 1.48329 * 126.93870 * 179.75551 * 5 4 3 7 7 O 1.21498 * 120.00270 * 353.39454 * 6 5 4 8 8 N 1.34783 * 119.99971 * 173.39401 * 6 5 4 9 9 C 1.46500 * 120.00091 * 3.63184 * 8 6 5 10 10 C 1.46501 * 119.99923 * 183.63197 * 8 6 5 11 11 H 1.09006 * 109.46943 * 0.02562 * 10 8 6 12 12 C 1.53002 * 109.47011 * 119.99887 * 10 8 6 13 13 C 1.52995 * 109.47165 * 240.00029 * 10 8 6 14 14 N 1.46901 * 109.47278 * 55.00290 * 13 10 8 15 15 C 1.46894 * 111.00118 * 180.02562 * 14 13 10 16 16 C 1.50698 * 109.47172 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99928 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00250 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00164 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99987 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00272 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99794 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47076 * 90.00381 * 23 21 19 25 25 H 1.48496 * 109.47082 * 210.00167 * 23 21 19 26 26 H 1.48496 * 109.47296 * 330.00294 * 23 21 19 27 27 N 1.30983 * 106.12312 * 359.63356 * 5 4 3 28 28 O 1.20900 * 111.43888 * 0.39214 * 27 5 4 29 29 H 1.08996 * 109.47481 * 60.00494 * 1 2 3 30 30 H 1.09004 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47695 * 300.00103 * 1 2 3 32 32 H 1.08998 * 109.47211 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.46805 * 119.99291 * 2 1 3 34 34 H 1.07997 * 128.03939 * 359.93790 * 4 3 2 35 35 H 1.09001 * 109.46872 * 84.07426 * 9 8 6 36 36 H 1.08993 * 109.46899 * 204.07379 * 9 8 6 37 37 H 1.08997 * 109.46878 * 324.07664 * 9 8 6 38 38 H 1.09005 * 109.47114 * 179.97438 * 12 10 8 39 39 H 1.08999 * 109.47461 * 299.99953 * 12 10 8 40 40 H 1.08997 * 109.47318 * 60.00312 * 12 10 8 41 41 H 1.08999 * 109.47061 * 175.00029 * 13 10 8 42 42 H 1.08994 * 109.47294 * 294.99729 * 13 10 8 43 43 H 1.00899 * 110.99859 * 56.04329 * 14 13 10 44 44 H 1.09002 * 109.46988 * 300.00041 * 15 14 13 45 45 H 1.08998 * 109.47430 * 59.99834 * 15 14 13 46 46 H 0.96999 * 119.99866 * 359.97438 * 18 16 15 47 47 H 0.96993 * 120.00012 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3015 2.1827 1.0854 5 6 2.7342 3.4214 0.5353 6 6 3.1542 4.6310 1.2841 7 8 3.0368 4.6686 2.4928 8 7 3.6661 5.6885 0.6235 9 6 3.7342 5.6751 -0.8398 10 6 4.1546 6.8512 1.3689 11 1 4.0232 6.6793 2.4373 12 6 5.6390 7.0644 1.0660 13 6 3.3652 8.0934 0.9509 14 7 1.9286 7.8439 1.1302 15 6 1.1375 9.0176 0.7373 16 6 -0.3276 8.7246 0.9340 17 8 -0.6782 7.6441 1.3592 18 7 -1.2484 9.6627 0.6364 19 6 -2.5813 9.3959 0.8149 20 1 -2.8935 8.4338 1.1935 21 6 -3.5306 10.3633 0.5086 22 7 -4.8082 10.1074 0.6791 23 14 -2.9905 12.0276 -0.1456 24 1 -2.9242 11.9788 -1.6283 25 1 -3.9679 13.0645 0.2723 26 1 -1.6503 12.3624 0.3991 27 7 2.6892 3.2771 -0.7657 28 8 2.2994 2.1752 -1.0750 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 2.2058 1.9144 2.1271 35 1 2.7770 5.9961 -1.2510 36 1 4.5188 6.3541 -1.1732 37 1 3.9571 4.6652 -1.1840 38 1 6.0024 7.9299 1.6202 39 1 6.2015 6.1795 1.3638 40 1 5.7708 7.2362 -0.0023 41 1 3.6666 8.9400 1.5677 42 1 3.5672 8.3168 -0.0966 43 1 1.7247 7.5715 2.0801 44 1 1.4235 9.8710 1.3522 45 1 1.3241 9.2470 -0.3118 46 1 -0.9680 10.5266 0.2960 47 1 -5.4707 10.7828 0.4657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715371275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = -20.893761 kcal Electronic energy + Delta-G solvation = -29557.895877 eV Core-core repulsion = 25357.798732 eV Total energy + Delta-G solvation = -4200.097145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.13927 -41.11311 -40.31245 -38.08125 -36.30220 -35.85930 -35.74653 -34.89895 -33.79077 -32.56793 -31.07810 -29.15008 -28.00307 -26.72046 -26.10365 -25.00793 -24.46946 -23.52950 -21.83958 -21.32819 -20.42469 -20.03324 -18.90212 -18.48573 -18.05154 -17.94771 -17.34805 -16.89547 -16.54513 -16.47881 -15.70709 -15.59417 -15.44091 -15.25208 -15.09933 -14.90082 -14.57046 -14.41761 -14.38583 -14.12835 -14.00683 -13.60658 -13.46383 -13.38247 -13.18730 -12.94484 -12.82574 -12.64448 -12.61747 -12.44989 -12.23984 -12.00374 -11.89158 -11.78064 -11.55589 -11.54177 -11.33551 -10.51376 -10.45238 -10.29078 -9.73816 -9.34657 -8.44767 -6.06451 0.05115 0.64666 1.27295 1.33378 1.42446 1.69669 1.91219 1.99462 2.09260 2.20353 2.66998 2.84550 3.10913 3.31684 3.43311 3.75786 3.91178 3.99915 4.07868 4.14767 4.17282 4.22552 4.27403 4.33160 4.40076 4.42620 4.48085 4.61588 4.65004 4.68043 4.71840 4.80376 4.93768 4.95942 5.02998 5.03292 5.12140 5.24875 5.38049 5.48236 5.51659 5.85790 6.01169 6.16552 6.24875 6.56089 6.83947 6.84576 7.05489 7.35073 7.92858 8.73251 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.002930 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.855941 B = 9552.809763 C =11566.797067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.037 4.037 3 C -0.012 4.012 4 C -0.203 4.203 5 C -0.042 4.042 6 C 0.590 3.410 7 O -0.566 6.566 8 N -0.573 5.573 9 C 0.078 3.922 10 C 0.132 3.868 11 H 0.079 0.921 12 C -0.148 4.148 13 C 0.052 3.948 14 N -0.688 5.688 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.589 5.589 19 C -0.332 4.332 20 H 0.050 0.950 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.231 1.231 27 N -0.336 5.336 28 O 0.116 5.884 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.185 0.815 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.336 0.664 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.391 0.609 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.677 -11.517 -5.737 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.075 4.075 3 C -0.075 4.075 4 C -0.226 4.226 5 C -0.200 4.200 6 C 0.377 3.623 7 O -0.445 6.445 8 N -0.303 5.303 9 C -0.064 4.064 10 C 0.029 3.971 11 H 0.097 0.903 12 C -0.206 4.206 13 C -0.077 4.077 14 N -0.320 5.320 15 C -0.067 4.067 16 C 0.233 3.767 17 O -0.503 6.503 18 N -0.231 5.231 19 C -0.461 4.461 20 H 0.068 0.932 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.154 1.154 27 N -0.039 5.039 28 O 0.042 5.958 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.203 0.797 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.154 0.846 44 H 0.097 0.903 45 H 0.135 0.865 46 H 0.226 0.774 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.425 -11.569 -6.448 27.785 hybrid contribution -0.858 1.156 1.421 2.023 sum 23.566 -10.413 -5.028 26.250 Atomic orbital electron populations 1.21846 0.93582 1.03951 1.01948 1.20418 0.96282 0.83580 1.07183 1.25171 1.00100 0.98146 0.84123 1.22637 1.06032 0.91398 1.02549 1.23550 1.07431 0.98240 0.90764 1.17189 0.77231 0.82007 0.85911 1.90730 1.56786 1.82334 1.14635 1.47551 1.58942 1.15506 1.08324 1.22089 1.02510 1.04241 0.77580 1.21370 0.95033 0.83841 0.96830 0.90306 1.22043 0.91543 1.03197 1.03827 1.22483 0.85785 0.96181 1.03250 1.59997 1.05872 1.35134 1.30949 1.21620 0.88059 0.93075 1.03915 1.21081 0.89271 0.84475 0.81870 1.90566 1.82754 1.26408 1.50547 1.42004 1.05420 1.15321 1.60336 1.18990 0.81885 1.01647 1.43606 0.93183 1.26169 0.94484 1.03661 0.97085 1.69808 1.01761 1.37314 1.48602 0.85316 0.80047 0.76219 0.79603 1.17988 1.19832 1.15396 1.74296 1.14873 0.99666 1.15071 1.84739 1.59478 1.17300 1.34274 0.93095 0.88734 0.93421 0.86707 0.85970 0.79727 0.93717 0.87809 0.89866 0.88971 0.92440 0.90229 0.91606 0.88680 0.84602 0.90328 0.86536 0.77364 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.89 71.98 0.71 -1.20 16 2 C -0.04 -0.38 6.50 29.85 0.19 -0.18 16 3 C -0.01 -0.24 6.73 25.01 0.17 -0.07 16 4 C -0.20 -5.12 10.93 22.60 0.25 -4.88 16 5 C -0.04 -1.29 6.87 42.96 0.30 -0.99 16 6 C 0.59 19.83 7.70 86.93 0.67 20.50 16 7 O -0.57 -22.36 16.29 -3.71 -0.06 -22.42 16 8 N -0.57 -15.32 2.49 -825.45 -2.05 -17.37 16 9 C 0.08 1.73 8.78 127.77 1.12 2.85 16 10 C 0.13 2.92 2.87 44.99 0.13 3.05 16 11 H 0.08 2.14 6.90 -2.38 -0.02 2.12 16 12 C -0.15 -2.00 9.18 71.98 0.66 -1.34 16 13 C 0.05 1.10 4.98 86.30 0.43 1.53 16 14 N -0.69 -22.29 5.85 -517.96 -3.03 -25.32 16 15 C 0.07 2.10 6.17 85.56 0.53 2.63 16 16 C 0.44 21.34 7.82 87.66 0.69 22.03 16 17 O -0.62 -37.05 15.78 -3.07 -0.05 -37.10 16 18 N -0.59 -28.94 5.09 -306.98 -1.56 -30.50 16 19 C -0.33 -20.22 10.16 84.04 0.85 -19.36 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.93 -57.62 13.96 21.66 0.30 -57.32 16 23 Si 0.97 39.48 27.74 68.60 1.90 41.38 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.88 6.52 99.48 0.65 -7.24 16 27 N -0.34 -9.39 8.71 -49.53 -0.43 -9.82 16 28 O 0.12 2.75 11.18 71.93 0.80 3.55 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.19 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.53 6.44 -2.39 -0.02 1.51 16 37 H 0.08 1.90 5.38 -2.39 -0.01 1.88 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.82 6.67 -2.39 -0.02 0.80 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.65 7.84 -2.39 -0.02 1.63 16 43 H 0.34 12.78 8.43 -89.69 -0.76 12.02 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.39 15.71 5.76 -92.71 -0.53 15.17 16 47 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -89.61 392.62 2.65 -86.96 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.34 Total: 43.80 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 7.16 Total: 24.14 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -6.77 Total: -140.32 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: 0.70 Total: -55.97 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -89.61 2.65 -86.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715371275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.067 kcal (2) G-P(sol) polarization free energy of solvation -89.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds