Wall clock time and date at job start Tue Mar 31 2020 21:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29928 * 125.37732 * 2 1 4 4 C 1.36070 * 108.47547 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.45013 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99756 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99858 * 0.02661 * 5 4 3 8 8 C 1.46495 * 119.99771 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47091 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.46914 * 294.99418 * 9 8 7 11 11 N 1.46894 * 109.47543 * 54.99666 * 9 8 7 12 12 C 1.46897 * 110.99921 * 64.48852 * 11 9 8 13 13 C 1.50703 * 109.47218 * 184.52663 * 12 11 9 14 14 O 1.21291 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99968 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99858 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99884 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99962 * 179.97438 * 16 15 13 19 19 N 1.31418 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00032 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46730 * 90.00231 * 20 18 16 22 22 H 1.48501 * 109.47284 * 210.00137 * 20 18 16 23 23 H 1.48496 * 109.47179 * 330.00693 * 20 18 16 24 24 C 1.53002 * 109.47345 * 174.99840 * 9 8 7 25 25 C 1.53001 * 109.47128 * 63.99117 * 24 9 8 26 26 C 1.53005 * 109.47224 * 183.98906 * 24 9 8 27 27 C 1.36092 * 107.10166 * 0.02562 * 4 3 2 28 28 O 1.34051 * 125.37339 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47089 * 89.99803 * 1 2 3 30 30 H 1.09000 * 109.46952 * 209.99953 * 1 2 3 31 31 H 1.09001 * 109.46614 * 329.99765 * 1 2 3 32 32 H 0.96998 * 119.99801 * 359.97438 * 7 5 4 33 33 H 1.09006 * 109.47309 * 299.99673 * 8 7 5 34 34 H 1.09000 * 109.47998 * 59.99484 * 8 7 5 35 35 H 1.00899 * 111.00619 * 188.44852 * 11 9 8 36 36 H 1.08993 * 109.47753 * 304.52972 * 12 11 9 37 37 H 1.09006 * 109.46984 * 64.53456 * 12 11 9 38 38 H 0.96999 * 120.00241 * 0.02562 * 15 13 12 39 39 H 0.96996 * 119.99936 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.46996 * 303.99228 * 24 9 8 41 41 H 1.08996 * 109.47560 * 60.00134 * 25 24 9 42 42 H 1.08999 * 109.47089 * 180.02562 * 25 24 9 43 43 H 1.09006 * 109.47059 * 299.99975 * 25 24 9 44 44 H 1.09001 * 109.46938 * 60.80832 * 26 24 9 45 45 H 1.08993 * 109.46931 * 180.80506 * 26 24 9 46 46 H 1.09000 * 109.46720 * 300.80716 * 26 24 9 47 47 H 1.08002 * 126.52423 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5437 0.0003 6 8 5.8605 1.0616 0.0004 7 7 4.5880 2.8824 -0.0002 8 6 5.7633 3.7568 -0.0011 9 6 5.3115 5.2186 -0.0007 10 1 4.7886 5.4375 -0.9318 11 7 4.4087 5.4519 1.1343 12 6 5.1110 5.2695 2.4116 13 6 4.1308 5.4071 3.5480 14 8 2.9620 5.6342 3.3165 15 7 4.5528 5.2777 4.8214 16 6 3.6609 5.4024 5.8552 17 1 2.6201 5.6038 5.6491 18 6 4.0959 5.2685 7.1680 19 7 5.3624 5.0229 7.4188 20 14 2.8809 5.4390 8.5765 21 1 2.3021 4.1088 8.8947 22 1 3.5810 5.9730 9.7723 23 1 1.7936 6.3704 8.1823 24 6 6.5339 6.1303 0.1241 25 6 7.4252 5.9598 -1.1077 26 6 6.0758 7.5867 0.2245 27 6 3.5660 -0.6971 0.0003 28 8 2.2831 -1.0931 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 3.6974 3.2669 -0.0006 33 1 6.3620 3.5618 0.8888 34 1 6.3613 3.5612 -0.8912 35 1 3.9888 6.3677 1.0801 36 1 5.5628 4.2781 2.4396 37 1 5.8893 6.0264 2.5096 38 1 5.4876 5.0965 5.0065 39 1 5.6660 4.9291 8.3352 40 1 7.0961 5.8636 1.0191 41 1 6.8631 6.2264 -2.0027 42 1 8.2962 6.6089 -1.0186 43 1 7.7516 4.9222 -1.1793 44 1 5.4525 7.7113 1.1100 45 1 6.9471 8.2372 0.2991 46 1 5.5014 7.8489 -0.6640 47 1 4.4361 -1.3369 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715489492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:14 Heat of formation + Delta-G solvation = -86.637863 kcal Electronic energy + Delta-G solvation = -29666.284885 eV Core-core repulsion = 25463.336862 eV Total energy + Delta-G solvation = -4202.948023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.44785 -40.96494 -40.18364 -39.02093 -36.01351 -35.98053 -35.28260 -34.01511 -33.23422 -33.14899 -30.14421 -28.82441 -28.54507 -27.35950 -26.19629 -25.05275 -23.28401 -22.39340 -21.74160 -21.33591 -20.36344 -19.84830 -19.05727 -18.31976 -17.94760 -17.49480 -17.14899 -17.09495 -16.47018 -16.14696 -15.89731 -15.84238 -15.52970 -15.16050 -15.07360 -14.87293 -14.76737 -14.40379 -14.02527 -13.89339 -13.63923 -13.57178 -13.45458 -13.29026 -13.11460 -12.95314 -12.86704 -12.45766 -12.40985 -12.32487 -12.13279 -12.11490 -11.87765 -11.76129 -11.52498 -11.50741 -11.34492 -10.35223 -10.21774 -10.01903 -9.91070 -9.31760 -8.47115 -5.96038 0.05526 0.95487 1.36801 1.40016 1.53209 1.59164 2.04894 2.07344 2.23445 2.28340 2.87495 2.96942 3.19922 3.49567 3.65338 3.74556 3.79522 3.91043 4.04638 4.25226 4.28534 4.39610 4.40249 4.42114 4.49722 4.52125 4.66700 4.67875 4.68906 4.73055 4.81022 4.86531 4.89116 5.01487 5.05078 5.22665 5.23639 5.32534 5.39739 5.40185 5.46961 5.85865 6.07052 6.30909 6.40097 6.58995 6.60837 7.07477 7.11923 7.55402 8.10628 8.70505 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006992 B = 0.003733 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4003.761779 B = 7499.649457 C =10314.951458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.198 3.802 3 N -0.491 5.491 4 C -0.103 4.103 5 C 0.594 3.406 6 O -0.574 6.574 7 N -0.691 5.691 8 C 0.125 3.875 9 C 0.089 3.911 10 H 0.109 0.891 11 N -0.667 5.667 12 C 0.066 3.934 13 C 0.440 3.560 14 O -0.617 6.617 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.148 4.148 27 C 0.022 3.978 28 O -0.196 6.196 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.417 0.583 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.353 0.647 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.394 0.606 39 H 0.277 0.723 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -6.390 -19.307 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.011 4.011 3 N -0.221 5.221 4 C -0.222 4.222 5 C 0.380 3.620 6 O -0.455 6.455 7 N -0.340 5.340 8 C 0.002 3.998 9 C -0.021 4.021 10 H 0.127 0.873 11 N -0.299 5.299 12 C -0.067 4.067 13 C 0.227 3.773 14 O -0.503 6.503 15 N -0.213 5.213 16 C -0.462 4.462 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.146 4.146 25 C -0.200 4.200 26 C -0.205 4.205 27 C -0.052 4.052 28 O -0.082 6.082 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.174 0.826 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.403 -6.568 -19.284 20.420 hybrid contribution 0.669 0.318 1.270 1.470 sum -0.734 -6.250 -18.014 19.082 Atomic orbital electron populations 1.20607 0.77760 1.06536 1.06603 1.27292 0.98153 0.77625 0.98041 1.70791 1.00949 1.31310 1.19073 1.21823 0.92169 0.93977 1.14199 1.16995 0.86264 0.82545 0.76209 1.90769 1.25241 1.76067 1.53404 1.45679 1.11777 1.04661 1.71888 1.21614 0.87238 0.88718 1.02264 1.21974 0.92810 0.92628 0.94737 0.87318 1.60113 1.32475 1.37570 0.99767 1.21490 0.94211 1.02401 0.88584 1.20849 0.89796 0.82322 0.84319 1.90485 1.20197 1.54946 1.84660 1.41950 1.11216 1.63357 1.04787 1.19666 0.92714 1.47851 0.85947 0.90261 1.26052 0.98489 0.96316 1.00482 1.69684 1.15499 1.48963 1.22193 0.84930 0.77728 0.78684 0.77018 1.19798 1.19481 1.19526 1.21756 0.96755 0.95770 1.00322 1.21815 0.99333 1.02126 0.96689 1.21838 1.01713 0.95213 1.01766 1.25742 0.85619 0.95165 0.98716 1.84417 1.16565 1.37943 1.69282 0.86377 0.86940 0.87895 0.74583 0.92774 0.89329 0.82639 0.89558 0.91321 0.77305 0.91361 0.91488 0.91439 0.91921 0.92338 0.94234 0.91521 0.91169 0.72777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.20 4.39 8.30 88.39 0.73 5.12 16 3 N -0.49 -14.13 11.06 -293.03 -3.24 -17.37 16 4 C -0.10 -3.00 6.99 40.41 0.28 -2.72 16 5 C 0.59 18.98 7.81 86.66 0.68 19.66 16 6 O -0.57 -20.30 16.89 -4.07 -0.07 -20.37 16 7 N -0.69 -20.20 5.38 -466.38 -2.51 -22.71 16 8 C 0.13 3.15 4.41 86.38 0.38 3.53 16 9 C 0.09 1.95 2.28 44.92 0.10 2.05 16 10 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 11 N -0.67 -19.95 5.21 -495.59 -2.58 -22.54 16 12 C 0.07 2.31 5.07 85.56 0.43 2.74 16 13 C 0.44 21.38 7.83 87.66 0.69 22.06 16 14 O -0.62 -34.34 15.88 -3.06 -0.05 -34.38 16 15 N -0.58 -30.47 5.29 -306.98 -1.62 -32.09 16 16 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -51.01 13.05 21.66 0.28 -50.72 16 20 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.13 -2.38 1.92 -10.79 -0.02 -2.40 16 25 C -0.14 -2.12 8.93 71.98 0.64 -1.48 16 26 C -0.15 -2.76 8.61 71.98 0.62 -2.14 16 27 C 0.02 0.50 11.95 67.32 0.80 1.30 16 28 O -0.20 -4.20 10.73 0.36 0.00 -4.20 16 29 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.42 12.70 7.87 -92.71 -0.73 11.97 16 33 H 0.05 1.54 6.66 -2.38 -0.02 1.53 16 34 H 0.09 1.97 6.79 -2.39 -0.02 1.95 16 35 H 0.35 10.75 7.18 -89.69 -0.64 10.10 16 36 H 0.09 3.06 6.32 -2.39 -0.02 3.05 16 37 H 0.07 2.16 6.05 -2.38 -0.01 2.14 16 38 H 0.39 20.08 7.90 -92.71 -0.73 19.34 16 39 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.07 1.44 6.68 -2.39 -0.02 1.43 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.89 6.65 -2.38 -0.02 0.87 16 44 H 0.04 0.90 6.23 -2.39 -0.01 0.88 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.26 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -76.18 391.14 -1.45 -77.63 By element: Atomic # 1 Polarization: 53.07 SS G_CDS: -1.06 Total: 52.00 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 7.37 Total: 29.03 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -9.67 Total: -145.42 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.11 Total: -58.95 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.18 -1.45 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715489492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.004 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds