Wall clock time and date at job start Tue Mar 31 2020 21:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29936 * 125.37579 * 2 1 4 4 C 1.36070 * 108.47743 * 179.97438 * 3 2 1 5 5 C 1.47424 * 126.45060 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00107 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99886 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99954 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47263 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47260 * 65.00119 * 9 8 7 11 11 N 1.46903 * 109.47069 * 305.00189 * 9 8 7 12 12 C 1.46904 * 110.99874 * 304.90380 * 11 9 8 13 13 C 1.50700 * 109.47024 * 185.47583 * 12 11 9 14 14 O 1.21292 * 119.99903 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99744 * 179.72249 * 13 12 11 16 16 C 1.37098 * 119.99690 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99811 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99862 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00119 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99776 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47309 * 90.00412 * 20 18 16 22 22 H 1.48506 * 109.47132 * 209.99744 * 20 18 16 23 23 H 1.48492 * 109.47405 * 329.99585 * 20 18 16 24 24 C 1.52991 * 109.47370 * 185.00121 * 9 8 7 25 25 C 1.53000 * 109.47369 * 175.30904 * 24 9 8 26 26 C 1.53004 * 109.47003 * 295.30857 * 24 9 8 27 27 C 1.36092 * 107.10016 * 0.22221 * 4 3 2 28 28 O 1.34050 * 125.38115 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47200 * 90.00734 * 1 2 3 30 30 H 1.09000 * 109.46970 * 210.00327 * 1 2 3 31 31 H 1.09002 * 109.46979 * 330.00175 * 1 2 3 32 32 H 0.96999 * 120.00080 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.46995 * 60.00012 * 8 7 5 34 34 H 1.09003 * 109.47191 * 300.00138 * 8 7 5 35 35 H 1.00897 * 111.00270 * 68.85023 * 11 9 8 36 36 H 1.09000 * 109.47351 * 65.46953 * 12 11 9 37 37 H 1.09008 * 109.46665 * 305.47264 * 12 11 9 38 38 H 0.97003 * 119.99951 * 359.97438 * 15 13 12 39 39 H 0.96994 * 119.99764 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.47457 * 55.30595 * 24 9 8 41 41 H 1.09001 * 109.47206 * 54.50196 * 25 24 9 42 42 H 1.08998 * 109.47125 * 174.50436 * 25 24 9 43 43 H 1.09001 * 109.46959 * 294.50118 * 25 24 9 44 44 H 1.08995 * 109.47391 * 60.00203 * 26 24 9 45 45 H 1.09004 * 109.46946 * 179.97438 * 26 24 9 46 46 H 1.09001 * 109.46885 * 299.99712 * 26 24 9 47 47 H 1.08005 * 126.52153 * 179.77718 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5440 0.0003 6 8 5.8605 1.0620 0.0004 7 7 4.5878 2.8826 -0.0002 8 6 5.7631 3.7572 0.0001 9 6 5.3112 5.2189 0.0001 10 1 4.7888 5.4377 0.9315 11 7 4.4077 5.4522 -1.1345 12 6 5.0395 5.0568 -2.4004 13 6 4.1404 5.4334 -3.5497 14 8 3.0777 5.9773 -3.3353 15 7 4.5195 5.1706 -4.8161 16 6 3.7014 5.5128 -5.8616 17 1 2.7529 5.9926 -5.6703 18 6 4.0924 5.2422 -7.1671 19 7 3.3084 5.5707 -8.1694 20 14 5.7326 4.4116 -7.4977 21 1 5.5475 2.9383 -7.5113 22 1 6.2565 4.8568 -8.8140 23 1 6.6977 4.7795 -6.4308 24 6 6.5334 6.1306 -0.1254 25 6 6.0745 7.5854 -0.2430 26 6 7.4166 5.9730 1.1140 27 6 3.5660 -0.6970 -0.0041 28 8 2.2831 -1.0929 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.6972 3.2671 0.0001 33 1 6.3617 3.5615 -0.8896 34 1 6.3610 3.5620 0.8903 35 1 3.5303 4.9717 -1.0029 36 1 5.2021 3.9790 -2.4044 37 1 5.9962 5.5689 -2.5045 38 1 5.3713 4.7392 -4.9877 39 1 3.5813 5.3815 -9.0807 40 1 7.1019 5.8560 -1.0140 41 1 5.4252 7.8307 0.5975 42 1 6.9442 8.2425 -0.2342 43 1 5.5273 7.7195 -1.1761 44 1 7.7435 4.9366 1.1978 45 1 8.2876 6.6222 1.0244 46 1 6.8481 6.2477 2.0026 47 1 4.4362 -1.3367 -0.0084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715489494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:19 Heat of formation + Delta-G solvation = -48.557371 kcal Electronic energy + Delta-G solvation = -29775.645870 eV Core-core repulsion = 25574.349141 eV Total energy + Delta-G solvation = -4201.296729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.70727 -40.05542 -38.75302 -37.65192 -35.21862 -34.42934 -34.03102 -32.99499 -32.51157 -31.62143 -29.04354 -28.09856 -27.33306 -26.33650 -24.61440 -23.88980 -22.47063 -21.66544 -20.75160 -19.92473 -19.14006 -18.46839 -18.17728 -17.21349 -16.77917 -16.63730 -16.21847 -15.60324 -15.27809 -14.92334 -14.75207 -14.64573 -14.20695 -14.13795 -14.00993 -13.69950 -13.49934 -13.44817 -13.13367 -12.95152 -12.86943 -12.50400 -12.44761 -12.20510 -11.99212 -11.68797 -11.66438 -11.49148 -11.17201 -11.10501 -10.97345 -10.85833 -10.58172 -10.49564 -10.36947 -9.95546 -9.54261 -9.40857 -9.16380 -8.60337 -8.17460 -8.12906 -6.29046 -3.80020 0.83096 1.72588 2.27440 2.85563 3.04742 3.08950 3.09440 3.16746 3.57453 3.77675 4.07663 4.12922 4.46260 4.48200 4.54348 4.68999 4.94354 4.95288 5.01007 5.04123 5.12975 5.16077 5.22504 5.25724 5.33434 5.39734 5.47339 5.58472 5.61692 5.67956 5.76218 5.81425 5.84003 5.90913 5.94823 5.97443 6.06461 6.20636 6.33341 6.58036 7.03130 7.06863 7.35039 7.48843 7.60530 7.92938 8.16983 8.62503 8.97603 9.45249 9.86138 10.84197 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007164 B = 0.003867 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.414523 B = 7239.729107 C = 9595.954828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.201 3.799 3 N -0.460 5.460 4 C -0.072 4.072 5 C 0.605 3.395 6 O -0.538 6.538 7 N -0.710 5.710 8 C 0.078 3.922 9 C 0.082 3.918 10 H 0.091 0.909 11 N -0.651 5.651 12 C 0.041 3.959 13 C 0.452 3.548 14 O -0.562 6.562 15 N -0.592 5.592 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.882 5.882 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.086 4.086 25 C -0.135 4.135 26 C -0.150 4.150 27 C 0.012 3.988 28 O -0.197 6.197 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.348 0.652 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -10.474 20.673 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 N -0.191 5.191 4 C -0.192 4.192 5 C 0.390 3.610 6 O -0.415 6.415 7 N -0.362 5.362 8 C -0.047 4.047 9 C -0.029 4.029 10 H 0.109 0.891 11 N -0.283 5.283 12 C -0.092 4.092 13 C 0.238 3.762 14 O -0.444 6.444 15 N -0.232 5.232 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.523 5.523 20 Si 0.704 3.296 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.105 4.105 25 C -0.192 4.192 26 C -0.208 4.208 27 C -0.062 4.062 28 O -0.083 6.083 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.245 0.755 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.794 -9.130 20.506 22.620 hybrid contribution 1.258 -2.215 -0.530 2.602 sum 4.052 -11.346 19.975 23.327 Atomic orbital electron populations 1.20358 0.80669 1.05369 1.05336 1.26389 0.96743 0.78147 0.99571 1.70790 1.00565 1.29979 1.17735 1.21750 0.92195 0.93056 1.12216 1.16707 0.86203 0.81828 0.76256 1.90825 1.24318 1.75442 1.50930 1.45760 1.10922 1.05457 1.74048 1.22338 0.88019 0.91131 1.03211 1.22002 0.94900 0.90653 0.95371 0.89060 1.60191 1.05696 1.62606 0.99766 1.21810 0.98568 0.98672 0.90121 1.19689 0.88428 0.84819 0.83261 1.90564 1.24374 1.45354 1.84058 1.42214 1.19537 1.55497 1.05940 1.19422 1.02876 1.37297 0.83580 0.86287 1.25016 0.97958 0.97826 0.95287 1.69620 1.36760 1.46708 0.99173 0.86703 0.83771 0.80337 0.78788 1.19729 1.20141 1.19475 1.21095 0.94482 0.96306 0.98617 1.21665 1.00412 0.93736 1.03435 1.21917 0.99574 1.01638 0.97658 1.25257 0.84897 0.95621 1.00450 1.84396 1.16673 1.37998 1.69265 0.88351 0.89140 0.87688 0.75486 0.90727 0.90572 0.83234 0.93600 0.89184 0.79803 0.91667 0.90986 0.92949 0.93575 0.90846 0.92658 0.92394 0.92548 0.75336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.20 2.02 8.30 -13.08 -0.11 1.91 16 3 N -0.46 -5.75 11.06 -7.65 -0.08 -5.84 16 4 C -0.07 -0.92 6.99 -83.02 -0.58 -1.50 16 5 C 0.60 8.38 7.81 -12.52 -0.10 8.28 16 6 O -0.54 -8.54 16.89 5.26 0.09 -8.45 16 7 N -0.71 -8.75 5.33 -61.38 -0.33 -9.07 16 8 C 0.08 0.89 4.11 -4.04 -0.02 0.87 16 9 C 0.08 0.90 2.29 -67.71 -0.16 0.75 16 10 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 11 N -0.65 -9.44 5.01 -107.99 -0.54 -9.98 16 12 C 0.04 0.68 5.27 -4.97 -0.03 0.65 16 13 C 0.45 10.32 7.83 -10.98 -0.09 10.23 16 14 O -0.56 -15.00 15.90 5.55 0.09 -14.92 16 15 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 16 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 17 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 18 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 19 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 20 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 24 C -0.09 -0.89 2.13 -90.62 -0.19 -1.09 16 25 C -0.14 -1.55 8.89 37.16 0.33 -1.22 16 26 C -0.15 -1.27 8.94 37.16 0.33 -0.94 16 27 C 0.01 0.12 11.95 29.96 0.36 0.48 16 28 O -0.20 -1.98 10.73 6.52 0.07 -1.91 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.41 4.90 6.95 -40.82 -0.28 4.62 16 33 H 0.07 0.94 6.76 -51.93 -0.35 0.59 16 34 H 0.08 0.82 6.81 -51.93 -0.35 0.46 16 35 H 0.35 5.23 7.34 -39.29 -0.29 4.94 16 36 H 0.05 0.73 6.64 -51.93 -0.34 0.38 16 37 H 0.09 1.36 6.29 -51.92 -0.33 1.04 16 38 H 0.37 8.00 5.76 -40.82 -0.24 7.76 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.80 6.64 -51.92 -0.34 0.45 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 44 H 0.05 0.45 6.67 -51.93 -0.35 0.11 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.23 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -35.60 389.54 -5.58 -41.17 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -6.63 Total: 16.98 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.11 Total: 10.70 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.23 Total: -64.56 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.25 Total: -25.27 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.60 -5.58 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715489494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.383 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds