Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.33491 * 126.83208 * 270.03130 * 3 2 1 5 5 N 1.20651 * 113.15967 * 179.97438 * 4 3 2 6 6 C 1.30018 * 112.30184 * 359.97438 * 5 4 3 7 7 C 1.37362 * 126.82334 * 89.71134 * 3 2 1 8 8 C 1.47394 * 128.56757 * 359.96323 * 7 3 2 9 9 O 1.21602 * 120.00242 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99964 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00047 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47412 * 325.00413 * 11 10 8 13 13 C 1.53004 * 109.46717 * 85.00461 * 11 10 8 14 14 C 1.52997 * 109.47026 * 204.99970 * 11 10 8 15 15 C 1.53004 * 109.47116 * 65.00308 * 14 11 10 16 16 N 1.46901 * 109.47019 * 179.97438 * 15 14 11 17 17 C 1.46900 * 110.99711 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46954 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00074 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99710 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00445 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99535 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00673 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99628 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47260 * 60.00165 * 25 23 21 27 27 H 1.48505 * 109.47132 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47343 * 300.00160 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08000 * 127.33578 * 180.02562 * 6 5 4 35 35 H 0.97006 * 120.00108 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.46789 * 299.99603 * 13 11 10 37 37 H 1.08997 * 109.47219 * 59.99834 * 13 11 10 38 38 H 1.09005 * 109.46937 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46942 * 185.00127 * 14 11 10 40 40 H 1.08999 * 109.47428 * 304.99890 * 14 11 10 41 41 H 1.09000 * 109.46632 * 299.99653 * 15 14 11 42 42 H 1.08996 * 109.46841 * 59.99668 * 15 14 11 43 43 H 1.00896 * 110.99817 * 303.95280 * 16 15 14 44 44 H 1.08994 * 109.47278 * 300.00259 * 17 16 15 45 45 H 1.09004 * 109.47009 * 59.99708 * 17 16 15 46 46 H 0.97007 * 120.00067 * 0.02562 * 20 18 17 47 47 H 0.96989 * 120.00448 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2986 2.1755 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7538 3.4649 0.5022 7 6 2.3016 2.1989 1.0996 8 6 2.1702 1.8510 2.5258 9 8 1.7776 0.7463 2.8486 10 7 2.4861 2.7570 3.4723 11 6 2.3561 2.4111 4.8899 12 1 1.4973 1.7539 5.0263 13 6 3.6250 1.6962 5.3588 14 6 2.1571 3.6873 5.7101 15 6 0.8254 4.3366 5.3281 16 7 0.6341 5.5616 6.1160 17 6 -0.6371 6.2138 5.7747 18 6 -0.7984 7.4635 6.6014 19 8 0.0613 7.7798 7.3963 20 7 -1.8974 8.2300 6.4567 21 6 -2.0439 9.3671 7.2084 22 1 -1.2788 9.6485 7.9169 23 6 -3.1772 10.1571 7.0596 24 7 -4.1089 9.8142 6.1987 25 14 -3.3771 11.7061 8.0843 26 1 -2.2530 12.6347 7.8025 27 1 -4.6619 12.3659 7.7389 28 1 -3.3750 11.3497 9.5259 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0689 4.3582 1.0209 35 1 2.7997 3.6382 3.2149 36 1 3.7667 0.7871 4.7745 37 1 4.4838 2.3534 5.2225 38 1 3.5280 1.4384 6.4135 39 1 2.1493 3.4394 6.7715 40 1 2.9719 4.3817 5.5051 41 1 0.8333 4.5844 4.2666 42 1 0.0107 3.6422 5.5330 43 1 0.6873 5.3675 7.1047 44 1 -0.6388 6.4750 4.7165 45 1 -1.4623 5.5324 5.9820 46 1 -2.5848 7.9772 5.8206 47 1 -4.8998 10.3658 6.0945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715687219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = -26.819171 kcal Electronic energy + Delta-G solvation = -28445.684502 eV Core-core repulsion = 24245.330412 eV Total energy + Delta-G solvation = -4200.354090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.29085 -40.09350 -38.34337 -37.07022 -35.23980 -34.86399 -34.11709 -33.82684 -31.88829 -31.23218 -30.53576 -29.29823 -26.29993 -25.48836 -24.39593 -24.12002 -22.66479 -22.00744 -20.90503 -20.74514 -19.25657 -18.39792 -18.06864 -17.89121 -16.82899 -16.66803 -16.15400 -15.58276 -15.33213 -15.10778 -14.89032 -14.57387 -14.41871 -14.19517 -13.89464 -13.84424 -13.77021 -13.65621 -13.14737 -13.01929 -12.79363 -12.36645 -12.30323 -12.18655 -11.93709 -11.69561 -11.52624 -11.33154 -11.32172 -11.28320 -11.05619 -10.96506 -10.79303 -10.45394 -10.36237 -10.22726 -9.87102 -9.51559 -9.39594 -8.49350 -8.09833 -7.97718 -6.42952 -3.84036 0.68418 1.42643 2.37530 2.86281 2.87138 3.19098 3.24923 3.29216 3.83428 3.88833 3.89851 4.00982 4.19348 4.23585 4.54225 4.71353 4.76157 4.76540 4.82378 4.87740 4.96171 5.08596 5.21848 5.25532 5.27552 5.29929 5.40094 5.43758 5.46317 5.51759 5.60991 5.63225 5.76554 5.80494 5.86258 5.89596 5.95893 6.02602 6.20305 6.24908 7.12503 7.16855 7.53659 7.62009 7.77825 7.84398 8.04525 8.59626 9.16218 9.52625 10.03949 10.74712 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.001947 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.056311 B =14377.741157 C =15443.752542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.054 3.946 4 O 0.092 5.908 5 N -0.352 5.352 6 C 0.024 3.976 7 C -0.266 4.266 8 C 0.601 3.399 9 O -0.533 6.533 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.202 0.798 35 H 0.402 0.598 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.954 -21.193 -12.042 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.011 4.011 4 O 0.033 5.967 5 N -0.058 5.058 6 C -0.159 4.159 7 C -0.274 4.274 8 C 0.387 3.613 9 O -0.412 6.412 10 N -0.365 5.365 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.683 -20.519 -12.805 27.311 hybrid contribution -1.154 0.512 1.093 1.670 sum 11.529 -20.007 -11.712 25.891 Atomic orbital electron populations 1.21719 0.92674 1.03173 1.02797 1.20409 0.97359 0.85403 1.05564 1.24967 0.94761 0.96144 0.85195 1.84597 1.61205 1.17553 1.33366 1.73684 1.16126 0.98385 1.17561 1.26431 1.00674 0.99207 0.89602 1.22091 1.14473 0.95421 0.95385 1.16751 0.77033 0.84428 0.83041 1.90786 1.46754 1.21411 1.82202 1.45918 1.67627 1.16738 1.06237 1.21025 0.99269 0.96792 0.78841 0.89094 1.22166 0.97347 1.00798 1.01765 1.21891 0.98719 0.95496 1.00341 1.21964 0.95778 0.90583 0.98788 1.60077 1.34428 1.24585 1.11097 1.21664 0.90464 0.95535 1.00535 1.19801 0.84091 0.86400 0.87148 1.90515 1.42617 1.73676 1.40011 1.41866 1.18438 1.22375 1.37308 1.19657 1.05149 0.99561 1.18630 0.87955 1.25272 0.95409 0.99748 0.97516 1.69599 1.09636 1.39770 1.35318 0.85911 0.77462 0.80979 0.79824 1.19865 1.20968 1.19895 0.91690 0.92247 0.90859 0.89164 0.86786 0.78151 0.76311 0.92103 0.92253 0.91307 0.89981 0.90112 0.91254 0.95479 0.83154 0.89724 0.93913 0.77455 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.05 -0.32 6.05 -27.88 -0.17 -0.49 16 3 C 0.05 0.46 6.80 -34.62 -0.24 0.23 16 4 O 0.09 0.88 11.06 18.66 0.21 1.09 16 5 N -0.35 -3.62 12.01 31.81 0.38 -3.24 16 6 C 0.02 0.20 11.95 -14.72 -0.18 0.02 16 7 C -0.27 -2.41 6.47 -102.89 -0.67 -3.08 16 8 C 0.60 5.88 7.78 -12.53 -0.10 5.78 16 9 O -0.53 -6.45 14.91 5.28 0.08 -6.37 16 10 N -0.71 -5.68 4.53 -54.89 -0.25 -5.93 16 11 C 0.15 1.19 2.57 -67.93 -0.17 1.01 16 12 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 13 C -0.16 -1.20 9.48 37.16 0.35 -0.85 16 14 C -0.13 -1.10 5.01 -26.73 -0.13 -1.24 16 15 C 0.06 0.66 5.57 -3.82 -0.02 0.64 16 16 N -0.67 -10.31 6.13 -115.06 -0.70 -11.01 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.36 7.82 -10.98 -0.09 10.28 16 19 O -0.58 -15.78 15.78 5.56 0.09 -15.69 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 25 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.83 6.79 -51.93 -0.35 0.48 16 34 H 0.20 1.06 7.88 -52.49 -0.41 0.64 16 35 H 0.40 2.52 7.97 -40.82 -0.33 2.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -33.54 401.84 -6.94 -40.47 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.12 Total: 12.24 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.31 Total: 4.58 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.10 Total: -58.39 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.37 Total: -20.97 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.54 -6.94 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715687219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.652 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds