Wall clock time and date at job start Tue Mar 31 2020 21:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30619 * 125.42379 * 2 1 4 4 C 1.33684 * 108.99907 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.27794 * 179.73828 * 4 3 2 6 6 C 1.36348 * 107.45107 * 0.02562 * 4 3 2 7 7 C 1.46720 * 126.64276 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00041 * 352.60618 * 7 6 4 9 9 N 1.34776 * 120.00099 * 172.60720 * 7 6 4 10 10 C 1.46504 * 119.99974 * 3.63754 * 9 7 6 11 11 C 1.46498 * 120.00335 * 183.63285 * 9 7 6 12 12 C 1.53009 * 109.46838 * 90.00049 * 11 9 7 13 13 N 1.46906 * 109.46950 * 180.02562 * 12 11 9 14 14 C 1.46897 * 110.99917 * 66.04747 * 13 12 11 15 15 C 1.46903 * 110.99726 * 190.00362 * 13 12 11 16 16 C 1.50695 * 109.46988 * 169.99992 * 15 13 12 17 17 O 1.21293 * 120.00160 * 359.97438 * 16 15 13 18 18 N 1.34781 * 120.00300 * 179.97438 * 16 15 13 19 19 C 1.37086 * 120.00225 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00336 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99815 * 180.02562 * 19 18 16 22 22 N 1.31404 * 120.00119 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47230 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46690 * 120.00304 * 23 21 19 26 26 H 1.48497 * 109.47180 * 239.99713 * 23 21 19 27 27 O 1.33667 * 125.42281 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.46736 * 90.02398 * 1 2 3 29 29 H 1.08999 * 109.47495 * 210.01817 * 1 2 3 30 30 H 1.08999 * 109.47594 * 330.02545 * 1 2 3 31 31 H 1.08994 * 109.47288 * 90.02012 * 5 4 3 32 32 H 1.08995 * 109.47302 * 210.02819 * 5 4 3 33 33 H 1.09007 * 109.46909 * 330.02426 * 5 4 3 34 34 H 1.09003 * 109.46953 * 83.96475 * 10 9 7 35 35 H 1.09000 * 109.47202 * 203.96736 * 10 9 7 36 36 H 1.08997 * 109.46906 * 323.96475 * 10 9 7 37 37 H 1.08995 * 109.47681 * 210.00276 * 11 9 7 38 38 H 1.09007 * 109.47340 * 330.00826 * 11 9 7 39 39 H 1.09003 * 109.47140 * 299.99900 * 12 11 9 40 40 H 1.08994 * 109.46873 * 60.00211 * 12 11 9 41 41 H 1.09000 * 109.47304 * 59.99931 * 14 13 12 42 42 H 1.09005 * 109.47145 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47199 * 299.99859 * 14 13 12 44 44 H 1.09002 * 109.46848 * 289.99617 * 15 13 12 45 45 H 1.08991 * 109.47529 * 49.99576 * 15 13 12 46 46 H 0.96998 * 119.99093 * 359.97438 * 18 16 15 47 47 H 0.97010 * 119.99920 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 -0.0048 6 6 3.5708 -0.6769 0.0003 7 6 4.7635 -1.5313 0.0003 8 8 5.8667 -1.0360 -0.1352 9 7 4.6373 -2.8647 0.1502 10 6 3.3056 -3.4697 0.2333 11 6 5.8317 -3.7093 0.2300 12 6 6.2645 -3.8436 1.6915 13 7 7.4626 -4.6900 1.7715 14 6 8.6105 -4.0399 1.1254 15 6 7.7698 -5.0369 3.1655 16 6 8.8437 -6.0937 3.1951 17 8 9.3072 -6.5166 2.1570 18 7 9.2893 -6.5689 4.3750 19 6 10.2658 -7.5307 4.4019 20 1 10.6785 -7.9073 3.4776 21 6 10.7247 -8.0209 5.6183 22 7 10.2230 -7.5624 6.7429 23 14 12.0550 -9.3320 5.6549 24 1 12.4496 -9.6758 4.2652 25 1 13.2371 -8.8171 6.3917 26 1 11.5362 -10.5446 6.3371 27 8 2.2817 -1.0892 0.0005 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 5.0354 1.8242 1.0215 32 1 5.5728 1.1096 -0.5175 33 1 4.4943 2.5255 -0.5223 34 1 2.9183 -3.6351 -0.7721 35 1 3.3714 -4.4224 0.7587 36 1 2.6362 -2.8016 0.7752 37 1 5.6067 -4.6960 -0.1745 38 1 6.6372 -3.2550 -0.3471 39 1 6.4896 -2.8568 2.0959 40 1 5.4591 -4.2978 2.2686 41 1 8.8183 -3.0921 1.6221 42 1 9.4838 -4.6880 1.1986 43 1 8.3811 -3.8572 0.0755 44 1 8.1193 -4.1490 3.6923 45 1 6.8718 -5.4178 3.6516 46 1 8.9189 -6.2304 5.2051 47 1 10.5432 -7.9050 7.5922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715793043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:56 Heat of formation + Delta-G solvation = -29.990965 kcal Electronic energy + Delta-G solvation = -29004.345793 eV Core-core repulsion = 24803.854164 eV Total energy + Delta-G solvation = -4200.491629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85815 -40.07475 -38.58567 -36.90671 -36.03688 -35.18731 -33.83932 -33.21466 -31.24693 -30.33371 -29.71677 -28.00127 -27.64986 -26.83211 -25.24046 -24.07709 -22.31529 -22.16881 -21.14572 -20.11519 -19.13977 -17.86400 -17.79571 -17.53052 -16.71698 -16.33295 -16.13425 -15.44541 -15.24715 -14.83842 -14.63414 -14.56695 -14.20674 -13.93293 -13.78727 -13.57653 -13.50706 -13.44544 -13.31963 -13.26738 -13.14330 -12.79688 -12.50157 -12.44479 -12.09302 -12.03701 -11.50631 -11.35947 -11.31264 -11.22762 -11.12737 -10.93403 -10.80513 -10.40346 -10.33389 -10.21525 -9.47673 -9.30890 -8.96753 -8.42361 -7.97088 -7.85686 -6.40759 -3.81375 0.43562 1.95600 1.99228 2.60536 2.76629 3.16988 3.27499 3.34813 3.44607 3.91767 4.03540 4.15022 4.29713 4.32689 4.70853 4.74774 4.79743 4.87010 4.92407 4.99099 5.11561 5.15042 5.19130 5.23327 5.27184 5.36664 5.42823 5.46552 5.55040 5.66518 5.68364 5.71927 5.78668 5.85430 5.96678 5.99109 6.05881 6.17540 6.29799 6.60443 6.87179 7.20492 7.25779 7.37094 7.56488 7.67403 8.07810 8.63130 9.19411 9.55789 10.07675 10.77103 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.001843 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.125373 B =15188.848426 C =15399.027942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.214 3.786 3 N -0.490 5.490 4 C 0.084 3.916 5 C -0.085 4.085 6 C -0.118 4.118 7 C 0.606 3.394 8 O -0.510 6.510 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.118 3.882 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.020 3.980 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 O -0.183 6.183 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.362 15.358 -11.498 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.008 3.992 3 N -0.221 5.221 4 C -0.040 4.040 5 C -0.141 4.141 6 C -0.173 4.173 7 C 0.393 3.607 8 O -0.387 6.387 9 N -0.336 5.336 10 C -0.070 4.070 11 C -0.004 4.004 12 C -0.089 4.089 13 N -0.240 5.240 14 C -0.128 4.128 15 C -0.084 4.084 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 O -0.071 6.071 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.761 15.349 -12.333 28.613 hybrid contribution 0.551 -0.426 1.245 1.427 sum -20.210 14.923 -11.088 27.460 Atomic orbital electron populations 1.20391 0.80766 1.05625 1.05146 1.26640 0.96788 0.79079 0.96660 1.70363 1.01635 1.30062 1.20031 1.22086 0.93483 0.91259 0.97141 1.20440 0.92305 0.97550 1.03852 1.22844 0.82321 0.95040 1.17062 1.16449 0.85500 0.81361 0.77347 1.90870 1.24224 1.73339 1.50292 1.47727 1.08440 1.05937 1.71491 1.22047 0.82799 0.99642 1.02466 1.21603 0.86537 0.94837 0.97394 1.22439 0.93964 0.95917 0.96544 1.61524 1.03978 1.42707 1.15788 1.22594 0.95055 0.96985 0.98143 1.21857 0.99483 0.98054 0.89052 1.19712 0.86224 0.86311 0.84711 1.90484 1.61058 1.62159 1.32363 1.41871 1.35468 1.36336 1.06508 1.19748 1.13796 1.14808 0.94335 0.87831 1.25265 0.99042 0.99015 0.94723 1.69622 1.43417 1.43712 0.97625 0.85801 0.80033 0.79964 0.78546 1.19211 1.20803 1.20779 1.84656 1.16245 1.36512 1.69689 0.88373 0.88850 0.87734 0.89948 0.88349 0.90361 0.92083 0.89852 0.90340 0.88831 0.89011 0.94704 0.90852 0.96507 0.88514 0.91978 0.93424 0.89479 0.77517 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.18 16 2 C 0.21 1.77 8.32 -12.80 -0.11 1.66 16 3 N -0.49 -5.29 11.26 -7.07 -0.08 -5.37 16 4 C 0.08 0.97 7.16 -82.47 -0.59 0.38 16 5 C -0.08 -0.83 9.96 36.01 0.36 -0.47 16 6 C -0.12 -1.35 6.79 -36.84 -0.25 -1.60 16 7 C 0.61 7.63 7.64 -12.84 -0.10 7.53 16 8 O -0.51 -7.60 14.33 5.20 0.07 -7.52 16 9 N -0.60 -6.57 2.87 -183.10 -0.53 -7.09 16 10 C 0.07 0.56 9.65 59.85 0.58 1.14 16 11 C 0.12 1.41 5.33 -4.04 -0.02 1.39 16 12 C 0.04 0.55 5.28 -3.82 -0.02 0.53 16 13 N -0.52 -8.74 4.50 -244.36 -1.10 -9.84 16 14 C 0.02 0.34 8.96 60.06 0.54 0.88 16 15 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 16 C 0.45 10.55 7.47 -10.99 -0.08 10.47 16 17 O -0.58 -15.50 13.91 5.55 0.08 -15.42 16 18 N -0.57 -14.39 5.29 -10.97 -0.06 -14.45 16 19 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 O -0.18 -1.70 7.51 4.42 0.03 -1.67 16 28 H 0.10 0.17 8.14 -51.92 -0.42 -0.26 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.05 6.34 -51.93 -0.33 0.72 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 36 H 0.08 0.59 5.43 -51.93 -0.28 0.31 16 37 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.09 1.22 5.78 -51.93 -0.30 0.92 16 39 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 1.96 5.83 -51.93 -0.30 1.66 16 43 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 44 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 45 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 46 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -34.31 389.68 -6.43 -40.74 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.84 Total: 7.64 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 0.42 Total: 14.94 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -1.04 Total: -60.68 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.18 Total: -24.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.31 -6.43 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715793043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.750 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds