Wall clock time and date at job start Tue Mar 31 2020 22:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50689 * 109.47324 * 2 1 4 4 O 1.34261 * 126.52870 * 269.97868 * 3 2 1 5 5 C 1.34050 * 108.23012 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47641 * 359.61142 * 6 5 4 8 8 C 1.47424 * 126.45045 * 180.14954 * 7 6 5 9 9 O 1.21616 * 120.00218 * 180.26938 * 8 7 6 10 10 N 1.34777 * 119.99756 * 0.27770 * 8 7 6 11 11 C 1.46496 * 119.99954 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47592 * 34.99843 * 11 10 8 13 13 C 1.52997 * 109.47109 * 274.99908 * 11 10 8 14 14 C 1.53002 * 109.47201 * 154.99894 * 11 10 8 15 15 C 1.53000 * 109.47015 * 294.99906 * 14 11 10 16 16 N 1.46899 * 109.47000 * 179.97438 * 15 14 11 17 17 C 1.46903 * 110.99998 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47257 * 180.02562 * 17 16 15 19 19 O 1.21300 * 119.99895 * 359.97438 * 18 17 16 20 20 N 1.34768 * 120.00055 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00196 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00135 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00280 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47303 * 89.99622 * 25 23 21 27 27 H 1.48496 * 109.47090 * 210.00223 * 25 23 21 28 28 H 1.48500 * 109.46583 * 329.99607 * 25 23 21 29 29 H 1.08996 * 109.47201 * 59.99488 * 1 2 3 30 30 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46472 * 299.99408 * 1 2 3 32 32 H 1.09008 * 109.46797 * 239.99900 * 2 1 3 33 33 H 1.09004 * 109.46913 * 120.00721 * 2 1 3 34 34 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47572 * 299.99831 * 13 11 10 37 37 H 1.08999 * 109.47612 * 60.00126 * 13 11 10 38 38 H 1.09008 * 109.47271 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46795 * 55.00093 * 14 11 10 40 40 H 1.08999 * 109.47103 * 175.00155 * 14 11 10 41 41 H 1.08998 * 109.47045 * 299.99865 * 15 14 11 42 42 H 1.08999 * 109.46982 * 60.00175 * 15 14 11 43 43 H 1.00901 * 110.99927 * 303.95711 * 16 15 14 44 44 H 1.09007 * 109.46760 * 299.99556 * 17 16 15 45 45 H 1.08991 * 109.46969 * 59.99811 * 17 16 15 46 46 H 0.96997 * 120.00017 * 359.97438 * 20 18 17 47 47 H 0.96998 * 120.00639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7238 3.3738 -0.6580 6 7 2.7357 3.3923 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1584 1.7774 2.5032 9 8 1.7628 0.6603 2.7763 10 7 2.4649 2.6435 3.4893 11 6 2.3211 2.2394 4.8901 12 1 2.5723 1.1836 4.9913 13 6 0.8765 2.4653 5.3404 14 6 3.2630 3.0734 5.7608 15 6 4.7136 2.7536 5.3941 16 7 5.6180 3.5548 6.2296 17 6 7.0227 3.2738 5.9042 18 6 7.9184 4.1116 6.7798 19 8 7.4343 4.8687 7.5945 20 7 9.2574 4.0197 6.6577 21 6 10.0724 4.7822 7.4539 22 1 9.6413 5.4570 8.1787 23 6 11.4529 4.6871 7.3284 24 7 11.9775 3.8658 6.4469 25 14 12.5633 5.7256 8.4138 26 1 12.8743 4.9808 9.6603 27 1 13.8240 6.0258 7.6888 28 1 11.8741 6.9960 8.7551 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 3.0146 4.1939 -1.2978 35 1 2.7806 3.5345 3.2715 36 1 0.6252 3.5211 5.2393 37 1 0.2053 1.8712 4.7201 38 1 0.7696 2.1650 6.3828 39 1 3.0708 4.1330 5.5922 40 1 3.0929 2.8358 6.8109 41 1 4.9058 1.6940 5.5627 42 1 4.8837 2.9912 4.3440 43 1 5.4162 4.5393 6.1397 44 1 7.2313 2.2178 6.0765 45 1 7.2083 3.5148 4.8577 46 1 9.6446 3.4140 6.0065 47 1 12.9412 3.7990 6.3595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716127461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:16 Heat of formation + Delta-G solvation = -64.525945 kcal Electronic energy + Delta-G solvation = -28417.924935 eV Core-core repulsion = 24215.935756 eV Total energy + Delta-G solvation = -4201.989178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.84281 -39.96811 -38.29527 -36.99100 -35.28523 -35.02232 -34.44768 -33.79896 -31.80375 -31.19192 -29.65144 -29.16453 -26.23355 -25.20505 -24.13483 -23.93327 -22.49801 -21.92476 -20.96575 -20.72366 -19.22062 -18.53902 -17.86092 -17.23524 -16.75975 -16.38717 -16.13555 -15.58787 -15.39546 -15.05278 -14.97026 -14.62559 -14.38228 -14.17382 -13.93326 -13.79585 -13.70893 -13.58081 -13.06617 -13.02923 -12.71472 -12.27048 -12.22379 -12.13648 -11.77128 -11.67179 -11.63621 -11.50108 -11.29777 -11.14504 -11.10972 -11.03088 -10.91889 -10.38346 -10.30925 -10.20314 -9.49447 -9.47083 -9.19950 -8.43762 -8.03314 -7.94091 -6.40121 -3.80982 0.71908 1.66967 2.14586 2.86490 3.01875 3.19086 3.27399 3.33341 3.65355 3.92806 4.06494 4.15103 4.27195 4.43107 4.63715 4.76459 4.80195 4.82900 4.88993 5.01323 5.11825 5.20298 5.25966 5.30313 5.35341 5.37971 5.43143 5.53797 5.56162 5.63168 5.70172 5.76197 5.77713 5.82293 5.93152 5.97796 6.03192 6.09911 6.29297 6.30877 6.97583 7.23722 7.32116 7.56652 7.69065 7.91185 8.08060 8.63049 9.19421 9.56156 10.07694 10.77665 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015763 B = 0.001890 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.837160 B =14811.712645 C =15891.204585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.047 3.953 4 O -0.199 6.199 5 C 0.176 3.824 6 N -0.463 5.463 7 C -0.078 4.078 8 C 0.604 3.396 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.143 3.857 12 H 0.093 0.907 13 C -0.162 4.162 14 C -0.125 4.125 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.256 0.744 35 H 0.408 0.592 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.101 -6.358 -16.969 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.010 4.010 4 O -0.085 6.085 5 C -0.053 4.053 6 N -0.192 5.192 7 C -0.198 4.198 8 C 0.390 3.610 9 O -0.412 6.412 10 N -0.357 5.357 11 C 0.038 3.962 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.163 4.163 15 C -0.071 4.071 16 N -0.301 5.301 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.271 0.729 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.320 -6.601 -15.343 28.685 hybrid contribution 1.162 0.743 -1.483 2.026 sum -22.158 -5.858 -16.827 28.433 Atomic orbital electron populations 1.21701 0.92997 1.02997 1.02402 1.20411 0.97133 0.85361 1.05586 1.23845 0.98233 0.95547 0.83362 1.84390 1.63616 1.24198 1.36317 1.28043 0.98938 0.87057 0.91216 1.70747 1.17005 1.21186 1.10248 1.21512 1.10870 0.91736 0.95658 1.16684 0.77298 0.84470 0.82565 1.90783 1.47119 1.20056 1.83225 1.45940 1.66629 1.17305 1.05796 1.21064 0.95382 1.00567 0.79159 0.88938 1.22159 0.95860 1.02104 1.01866 1.21883 0.93576 1.00071 1.00782 1.21966 0.91804 0.98909 0.94399 1.60080 1.01768 1.11991 1.56269 1.21664 0.88696 1.00731 0.97106 1.19818 0.83106 0.86964 0.87442 1.90519 1.74735 1.42090 1.39415 1.41866 1.04154 1.38727 1.35344 1.19708 0.87248 1.19653 1.16245 0.87911 1.25270 0.97402 0.97714 0.97638 1.69612 1.12807 1.37114 1.34828 0.85848 0.78992 0.79974 0.79413 1.20386 1.20959 1.19429 0.92631 0.90949 0.91808 0.89653 0.86373 0.72879 0.75599 0.92381 0.92164 0.91178 0.91231 0.88934 0.91092 0.95554 0.83273 0.89661 0.93976 0.77465 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.05 -0.35 5.93 -27.89 -0.17 -0.52 16 3 C 0.05 0.43 6.69 -35.08 -0.23 0.20 16 4 O -0.20 -1.62 10.73 6.50 0.07 -1.55 16 5 C 0.18 1.22 13.19 51.96 0.69 1.90 16 6 N -0.46 -4.59 11.06 -11.48 -0.13 -4.71 16 7 C -0.08 -0.84 6.99 -83.02 -0.58 -1.42 16 8 C 0.60 6.96 7.78 -12.52 -0.10 6.87 16 9 O -0.53 -6.95 14.47 5.26 0.08 -6.88 16 10 N -0.71 -7.13 4.53 -54.88 -0.25 -7.38 16 11 C 0.14 1.37 2.57 -67.93 -0.17 1.20 16 12 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 13 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 14 C -0.12 -1.26 5.01 -26.73 -0.13 -1.40 16 15 C 0.06 0.74 5.57 -3.82 -0.02 0.72 16 16 N -0.67 -10.99 6.13 -115.06 -0.70 -11.70 16 17 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 18 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 19 O -0.58 -16.11 15.78 5.54 0.09 -16.02 16 20 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.12 1.01 6.48 -51.93 -0.34 0.67 16 34 H 0.26 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.41 3.92 8.33 -40.82 -0.34 3.58 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.33 7.75 -51.93 -0.40 -0.08 16 43 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 44 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -34.35 401.88 -6.64 -40.99 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.13 Total: 14.40 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.36 Total: 9.32 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.41 Total: -62.56 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.23 Total: -24.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.35 -6.64 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716127461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.535 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds