Wall clock time and date at job start Tue Mar 31 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50689 * 109.47324 * 2 1 4 4 O 1.34261 * 126.52870 * 269.97868 * 3 2 1 5 5 C 1.34050 * 108.23012 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47641 * 359.61142 * 6 5 4 8 8 C 1.47424 * 126.45045 * 180.14954 * 7 6 5 9 9 O 1.21616 * 120.00218 * 180.26938 * 8 7 6 10 10 N 1.34777 * 119.99756 * 0.27770 * 8 7 6 11 11 C 1.46496 * 119.99954 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47592 * 34.99843 * 11 10 8 13 13 C 1.52997 * 109.47109 * 274.99908 * 11 10 8 14 14 C 1.53002 * 109.47201 * 154.99894 * 11 10 8 15 15 C 1.53000 * 109.47015 * 294.99906 * 14 11 10 16 16 N 1.46899 * 109.47000 * 179.97438 * 15 14 11 17 17 C 1.46903 * 110.99998 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47257 * 180.02562 * 17 16 15 19 19 O 1.21300 * 119.99895 * 359.97438 * 18 17 16 20 20 N 1.34768 * 120.00055 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00196 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00135 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00280 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47303 * 89.99622 * 25 23 21 27 27 H 1.48496 * 109.47090 * 210.00223 * 25 23 21 28 28 H 1.48500 * 109.46583 * 329.99607 * 25 23 21 29 29 H 1.08996 * 109.47201 * 59.99488 * 1 2 3 30 30 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46472 * 299.99408 * 1 2 3 32 32 H 1.09008 * 109.46797 * 239.99900 * 2 1 3 33 33 H 1.09004 * 109.46913 * 120.00721 * 2 1 3 34 34 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47572 * 299.99831 * 13 11 10 37 37 H 1.08999 * 109.47612 * 60.00126 * 13 11 10 38 38 H 1.09008 * 109.47271 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46795 * 55.00093 * 14 11 10 40 40 H 1.08999 * 109.47103 * 175.00155 * 14 11 10 41 41 H 1.08998 * 109.47045 * 299.99865 * 15 14 11 42 42 H 1.08999 * 109.46982 * 60.00175 * 15 14 11 43 43 H 1.00901 * 110.99927 * 303.95711 * 16 15 14 44 44 H 1.09007 * 109.46760 * 299.99556 * 17 16 15 45 45 H 1.08991 * 109.46969 * 59.99811 * 17 16 15 46 46 H 0.96997 * 120.00017 * 359.97438 * 20 18 17 47 47 H 0.96998 * 120.00639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7238 3.3738 -0.6580 6 7 2.7357 3.3923 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1584 1.7774 2.5032 9 8 1.7628 0.6603 2.7763 10 7 2.4649 2.6435 3.4893 11 6 2.3211 2.2394 4.8901 12 1 2.5723 1.1836 4.9913 13 6 0.8765 2.4653 5.3404 14 6 3.2630 3.0734 5.7608 15 6 4.7136 2.7536 5.3941 16 7 5.6180 3.5548 6.2296 17 6 7.0227 3.2738 5.9042 18 6 7.9184 4.1116 6.7798 19 8 7.4343 4.8687 7.5945 20 7 9.2574 4.0197 6.6577 21 6 10.0724 4.7822 7.4539 22 1 9.6413 5.4570 8.1787 23 6 11.4529 4.6871 7.3284 24 7 11.9775 3.8658 6.4469 25 14 12.5633 5.7256 8.4138 26 1 12.8743 4.9808 9.6603 27 1 13.8240 6.0258 7.6888 28 1 11.8741 6.9960 8.7551 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 3.0146 4.1939 -1.2978 35 1 2.7806 3.5345 3.2715 36 1 0.6252 3.5211 5.2393 37 1 0.2053 1.8712 4.7201 38 1 0.7696 2.1650 6.3828 39 1 3.0708 4.1330 5.5922 40 1 3.0929 2.8358 6.8109 41 1 4.9058 1.6940 5.5627 42 1 4.8837 2.9912 4.3440 43 1 5.4162 4.5393 6.1397 44 1 7.2313 2.2178 6.0765 45 1 7.2083 3.5148 4.8577 46 1 9.6446 3.4140 6.0065 47 1 12.9412 3.7990 6.3595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716127461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:15 Heat of formation + Delta-G solvation = -92.953778 kcal Electronic energy + Delta-G solvation = -28419.157658 eV Core-core repulsion = 24215.935756 eV Total energy + Delta-G solvation = -4203.221902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.47226 -40.82037 -40.16342 -38.02124 -36.35212 -35.93014 -35.71303 -35.05919 -33.30050 -32.67020 -30.50673 -30.03799 -27.80747 -26.06458 -25.61904 -24.59552 -23.43573 -22.76913 -21.75163 -21.51319 -21.05873 -19.92476 -19.25042 -17.88440 -17.85186 -17.57396 -17.15207 -16.90969 -16.49945 -16.10072 -15.99569 -15.86186 -15.60779 -15.34266 -15.16356 -15.06709 -14.75282 -14.45854 -14.26942 -13.82830 -13.62506 -13.56560 -13.49618 -13.26052 -12.95473 -12.82573 -12.69062 -12.45296 -12.43253 -12.27931 -12.23143 -12.13250 -12.05024 -11.85922 -11.74924 -11.51792 -11.14259 -10.39130 -10.24538 -10.03262 -9.90653 -9.36015 -8.47603 -5.96803 0.02795 1.03410 1.37837 1.41521 1.54594 1.55155 2.02926 2.10998 2.21789 2.28443 2.86382 3.09697 3.19284 3.47062 3.54276 3.74703 3.87848 4.00420 4.07578 4.18870 4.23073 4.28066 4.30371 4.41571 4.44454 4.50281 4.54833 4.59223 4.65967 4.76770 4.81013 4.92011 4.93654 5.03941 5.09543 5.16512 5.18274 5.24163 5.30582 5.39968 5.49902 5.86251 6.07413 6.27557 6.39257 6.57537 6.58268 7.08438 7.10925 7.54089 8.09035 8.69825 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015763 B = 0.001890 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.837160 B =14811.712645 C =15891.204585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.044 3.956 4 O -0.199 6.199 5 C 0.193 3.807 6 N -0.494 5.494 7 C -0.104 4.104 8 C 0.599 3.401 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.148 3.852 12 H 0.081 0.919 13 C -0.155 4.155 14 C -0.114 4.114 15 C 0.063 3.937 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.301 0.699 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.346 0.654 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.224 -6.190 -18.226 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.013 4.013 4 O -0.086 6.086 5 C -0.035 4.035 6 N -0.223 5.223 7 C -0.223 4.223 8 C 0.385 3.615 9 O -0.436 6.436 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.099 0.901 13 C -0.214 4.214 14 C -0.152 4.152 15 C -0.066 4.066 16 N -0.312 5.312 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.316 0.684 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.164 0.836 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.448 -6.448 -16.610 29.449 hybrid contribution 1.169 0.700 -1.159 1.789 sum -22.279 -5.747 -17.769 29.071 Atomic orbital electron populations 1.21664 0.92316 1.03802 1.01769 1.20456 0.97633 0.84559 1.05821 1.24126 0.97710 0.96151 0.83315 1.84417 1.63674 1.24605 1.35865 1.29121 0.96273 0.87198 0.90949 1.70722 1.18608 1.21131 1.11798 1.21509 1.12495 0.92730 0.95536 1.16899 0.77005 0.84299 0.83263 1.90761 1.48252 1.20917 1.83702 1.45927 1.66222 1.17226 1.05775 1.20999 0.95957 0.99741 0.78928 0.90102 1.22099 0.94636 1.02353 1.02273 1.21779 0.91943 1.00631 1.00833 1.22000 0.92313 0.98175 0.94064 1.60088 1.01195 1.12292 1.57661 1.21522 0.88619 1.00079 0.96601 1.20826 0.83035 0.86461 0.87141 1.90486 1.75358 1.43785 1.41185 1.41940 1.04828 1.38841 1.35413 1.19688 0.88412 1.20942 1.17369 0.90201 1.26084 0.98110 0.98554 0.98674 1.69674 1.13505 1.37588 1.35396 0.84898 0.77226 0.78157 0.77869 1.19648 1.19485 1.19661 0.91800 0.89457 0.93778 0.87568 0.87894 0.68436 0.75259 0.91680 0.93275 0.90013 0.90360 0.88808 0.91151 0.95049 0.83569 0.88156 0.91929 0.77023 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.05 -0.67 5.93 29.84 0.18 -0.49 16 3 C 0.04 0.79 6.69 25.18 0.17 0.96 16 4 O -0.20 -2.90 10.73 0.35 0.00 -2.90 16 5 C 0.19 2.26 13.19 130.52 1.72 3.98 16 6 N -0.49 -9.28 11.06 -305.15 -3.37 -12.65 16 7 C -0.10 -2.21 6.99 40.41 0.28 -1.93 16 8 C 0.60 13.96 7.78 86.66 0.67 14.63 16 9 O -0.56 -14.88 14.47 -4.08 -0.06 -14.94 16 10 N -0.70 -13.95 4.53 -445.80 -2.02 -15.97 16 11 C 0.15 2.76 2.57 44.99 0.12 2.88 16 12 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 13 C -0.16 -2.54 9.48 71.98 0.68 -1.85 16 14 C -0.11 -2.16 5.01 30.59 0.15 -2.01 16 15 C 0.06 1.52 5.57 86.30 0.48 2.00 16 16 N -0.68 -21.72 6.13 -517.93 -3.17 -24.89 16 17 C 0.06 2.29 6.17 85.56 0.53 2.82 16 18 C 0.44 21.31 7.82 87.66 0.69 21.99 16 19 O -0.62 -34.93 15.78 -3.09 -0.05 -34.98 16 20 N -0.57 -30.00 5.29 -306.99 -1.62 -31.63 16 21 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.22 13.05 21.66 0.28 -49.93 16 25 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.10 1.80 6.48 -2.39 -0.02 1.78 16 34 H 0.30 0.04 8.06 -2.91 -0.02 0.02 16 35 H 0.41 7.68 8.33 -92.71 -0.77 6.91 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.03 0.73 7.75 -2.39 -0.02 0.72 16 43 H 0.35 11.34 8.43 -89.69 -0.76 10.59 16 44 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 47 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -74.92 401.88 -1.56 -76.48 By element: Atomic # 1 Polarization: 44.16 SS G_CDS: -1.24 Total: 42.92 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.66 Total: 23.22 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -9.90 Total: -135.07 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.10 Total: -52.82 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.92 -1.56 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716127461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.476 kcal (2) G-P(sol) polarization free energy of solvation -74.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds