Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46997 * 2 1 4 4 O 1.34255 * 126.52702 * 269.98057 * 3 2 1 5 5 C 1.34051 * 108.22992 * 180.02562 * 4 3 2 6 6 N 1.29935 * 109.24192 * 359.71372 * 5 4 3 7 7 C 1.36069 * 108.47479 * 0.45065 * 6 5 4 8 8 C 1.47422 * 126.44867 * 179.82051 * 7 6 5 9 9 O 1.21611 * 120.00387 * 179.68397 * 8 7 6 10 10 N 1.34776 * 119.99792 * 359.69262 * 8 7 6 11 11 C 1.46505 * 119.99805 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46996 * 34.60620 * 11 10 8 13 13 C 1.52992 * 109.47268 * 274.60086 * 11 10 8 14 14 C 1.53000 * 109.46989 * 154.60064 * 11 10 8 15 15 N 1.46899 * 109.47264 * 305.18588 * 14 11 10 16 16 C 1.46905 * 111.00294 * 163.93550 * 15 14 11 17 17 C 1.46906 * 110.99953 * 287.88832 * 15 14 11 18 18 C 1.50700 * 109.46858 * 169.99850 * 17 15 14 19 19 O 1.21295 * 120.00357 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99593 * 180.02562 * 18 17 15 21 21 C 1.37103 * 120.00008 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99905 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99898 * 179.97438 * 21 20 18 24 24 N 1.31418 * 120.00023 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47258 * 89.99693 * 25 23 21 27 27 H 1.48501 * 109.47251 * 209.99965 * 25 23 21 28 28 H 1.48506 * 109.46923 * 329.99619 * 25 23 21 29 29 H 1.09003 * 109.47365 * 299.99920 * 1 2 3 30 30 H 1.08998 * 109.47602 * 60.00181 * 1 2 3 31 31 H 1.09006 * 109.46642 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 240.00080 * 2 1 3 33 33 H 1.08998 * 109.47602 * 119.99819 * 2 1 3 34 34 H 1.07995 * 125.38146 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47064 * 59.99967 * 13 11 10 37 37 H 1.08999 * 109.47238 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.47349 * 300.00555 * 13 11 10 39 39 H 1.09002 * 109.47253 * 65.18246 * 14 11 10 40 40 H 1.08995 * 109.47269 * 185.18306 * 14 11 10 41 41 H 1.09002 * 109.46625 * 54.89006 * 16 15 14 42 42 H 1.08998 * 109.47480 * 174.89150 * 16 15 14 43 43 H 1.08999 * 109.47170 * 294.89778 * 16 15 14 44 44 H 1.08995 * 109.47202 * 290.00142 * 17 15 14 45 45 H 1.09001 * 109.46395 * 50.00138 * 17 15 14 46 46 H 0.96999 * 120.00296 * 359.97438 * 20 18 17 47 47 H 0.96998 * 120.00293 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2990 2.1741 -1.0788 5 6 2.7236 3.3739 -0.6580 6 7 2.7249 3.3962 0.6412 7 6 2.3024 2.1845 1.0936 8 6 2.1582 1.7776 2.5032 9 8 1.7627 0.6605 2.7763 10 7 2.4644 2.6438 3.4893 11 6 2.3206 2.2396 4.8901 12 1 2.5652 1.1822 4.9901 13 6 0.8783 2.4746 5.3432 14 6 3.2695 3.0669 5.7596 15 7 4.6403 2.9388 5.2472 16 6 5.5078 3.9899 5.7956 17 6 5.1859 1.6047 5.5310 18 6 6.4833 1.4237 4.7861 19 8 6.9116 2.3182 4.0878 20 7 7.1677 0.2678 4.8957 21 6 8.3483 0.1033 4.2184 22 1 8.7297 0.8998 3.5967 23 6 9.0542 -1.0881 4.3319 24 7 10.1856 -1.2461 3.6823 25 14 8.3942 -2.4660 5.4067 26 1 7.5190 -3.3503 4.5960 27 1 9.5280 -3.2557 5.9509 28 1 7.6109 -1.8873 6.5279 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0136 4.1943 -1.2977 35 1 2.7801 3.5348 3.2716 36 1 0.2023 1.8852 4.7238 37 1 0.7712 2.1735 6.3853 38 1 0.6337 3.5321 5.2432 39 1 2.9678 4.1139 5.7321 40 1 3.2303 2.7044 6.7868 41 1 5.4610 3.9682 6.8844 42 1 6.5347 3.8188 5.4726 43 1 5.1713 4.9626 5.4368 44 1 5.3647 1.5055 6.6016 45 1 4.4733 0.8449 5.2097 46 1 6.8254 -0.4474 5.4544 47 1 10.6782 -2.0779 3.7612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716473414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = -39.758276 kcal Electronic energy + Delta-G solvation = -30259.459635 eV Core-core repulsion = 26058.544464 eV Total energy + Delta-G solvation = -4200.915172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.48721 -39.71184 -38.68272 -37.00391 -34.97480 -34.77807 -34.13119 -33.76089 -31.63500 -31.11503 -29.21664 -28.21805 -26.98696 -24.90428 -24.55693 -23.69986 -22.53968 -21.72261 -20.64095 -20.35248 -19.27699 -18.25979 -18.20749 -16.89209 -16.44441 -16.20948 -15.99560 -15.32616 -15.21712 -14.93241 -14.72048 -14.57256 -14.33296 -14.10569 -13.73525 -13.64422 -13.50180 -13.15664 -12.90945 -12.75433 -12.53547 -12.39327 -12.15600 -11.98720 -11.88083 -11.78559 -11.56823 -11.38594 -11.35934 -11.23969 -11.08973 -10.78871 -10.66642 -10.55648 -9.97526 -9.94463 -9.49732 -9.10424 -8.81826 -8.52010 -8.14007 -7.95735 -6.27840 -3.78811 1.07657 2.03917 2.48341 3.05343 3.10488 3.17505 3.18621 3.42872 3.78185 3.92442 4.02610 4.13690 4.48889 4.61482 4.77042 4.89954 4.94074 5.04982 5.10544 5.16852 5.20402 5.26629 5.37504 5.40944 5.50011 5.57202 5.61243 5.65028 5.67033 5.71044 5.86943 5.89029 5.90651 5.95817 6.00752 6.01714 6.05603 6.11753 6.47137 6.59164 7.16652 7.29010 7.34391 7.62155 7.72684 8.18205 8.30816 8.64158 8.98958 9.46429 9.88001 10.85410 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.003665 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.550748 B = 7637.396371 C = 8830.725689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.043 3.957 4 O -0.201 6.201 5 C 0.172 3.828 6 N -0.458 5.458 7 C -0.070 4.070 8 C 0.606 3.394 9 O -0.542 6.542 10 N -0.686 5.686 11 C 0.145 3.855 12 H 0.089 0.911 13 C -0.161 4.161 14 C 0.044 3.956 15 N -0.515 5.515 16 C 0.024 3.976 17 C 0.040 3.960 18 C 0.455 3.545 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.883 5.883 25 Si 0.878 3.122 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.014 0.986 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 6.814 -1.610 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.014 4.014 4 O -0.087 6.087 5 C -0.057 4.057 6 N -0.186 5.186 7 C -0.189 4.189 8 C 0.392 3.608 9 O -0.421 6.421 10 N -0.336 5.336 11 C 0.039 3.961 12 H 0.107 0.893 13 C -0.220 4.220 14 C -0.085 4.085 15 N -0.238 5.238 16 C -0.124 4.124 17 C -0.091 4.091 18 C 0.240 3.760 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.523 5.523 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.269 0.731 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.332 7.087 -2.065 22.573 hybrid contribution -0.115 -1.194 1.077 1.612 sum -21.447 5.893 -0.988 22.264 Atomic orbital electron populations 1.21687 0.93237 1.02759 1.02214 1.20385 0.96861 0.85545 1.05660 1.23778 0.98747 0.95449 0.83413 1.84361 1.63692 1.24300 1.36346 1.27981 0.99453 0.86964 0.91298 1.70741 1.16427 1.21386 1.10082 1.21468 1.10296 0.91548 0.95632 1.16638 0.77215 0.84336 0.82634 1.90755 1.48027 1.20028 1.83266 1.45521 1.65721 1.17475 1.04871 1.21013 0.94255 1.00362 0.80433 0.89311 1.22148 0.96140 1.02097 1.01569 1.22488 0.89243 1.00638 0.96157 1.61529 1.00784 1.02376 1.59153 1.22523 1.00255 0.94027 0.95574 1.21952 0.97034 0.92026 0.98121 1.19616 0.86225 0.83818 0.86299 1.90530 1.69831 1.41345 1.42201 1.42216 1.22300 1.14385 1.44297 1.19414 0.96135 1.02735 1.24846 0.86337 1.25017 0.95858 0.97554 0.97679 1.69623 1.14407 1.26596 1.41687 0.86692 0.79276 0.82839 0.80726 1.19569 1.20200 1.19542 0.91892 0.92768 0.91144 0.89742 0.86348 0.73055 0.75192 0.91816 0.91579 0.92363 0.90073 0.93268 0.96740 0.88665 0.91922 0.93362 0.89403 0.79788 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.53 5.93 -27.88 -0.17 -0.69 16 3 C 0.04 0.57 6.69 -35.08 -0.23 0.33 16 4 O -0.20 -2.38 10.73 6.51 0.07 -2.31 16 5 C 0.17 1.82 13.19 51.96 0.69 2.50 16 6 N -0.46 -6.37 11.06 -11.48 -0.13 -6.50 16 7 C -0.07 -1.04 6.99 -83.02 -0.58 -1.62 16 8 C 0.61 9.46 7.78 -12.52 -0.10 9.36 16 9 O -0.54 -9.11 14.46 5.27 0.08 -9.04 16 10 N -0.69 -9.51 4.79 -54.88 -0.26 -9.77 16 11 C 0.14 1.75 2.52 -67.93 -0.17 1.58 16 12 H 0.09 1.23 6.22 -51.93 -0.32 0.91 16 13 C -0.16 -1.54 9.49 37.15 0.35 -1.18 16 14 C 0.04 0.50 4.53 -3.82 -0.02 0.48 16 15 N -0.51 -8.06 4.17 -244.36 -1.02 -9.08 16 16 C 0.02 0.37 9.19 60.07 0.55 0.92 16 17 C 0.04 0.70 5.30 -4.97 -0.03 0.67 16 18 C 0.45 10.61 7.42 -10.99 -0.08 10.52 16 19 O -0.56 -15.04 13.96 5.54 0.08 -14.96 16 20 N -0.59 -14.56 5.09 -10.96 -0.06 -14.61 16 21 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 22 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 24 N -0.88 -26.20 13.96 55.50 0.77 -25.43 16 25 Si 0.88 19.89 27.74 -169.99 -4.71 15.17 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 1.52 6.48 -51.93 -0.34 1.19 16 34 H 0.25 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.41 5.69 8.33 -40.82 -0.34 5.35 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.81 7.99 -51.93 -0.42 0.39 16 40 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 42 H 0.09 1.83 5.79 -51.93 -0.30 1.53 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.09 1.45 6.50 -51.93 -0.34 1.11 16 46 H 0.37 8.08 5.76 -40.82 -0.24 7.85 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -35.71 391.55 -5.86 -41.57 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.91 Total: 14.94 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 0.33 Total: 14.12 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.69 Total: -65.39 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.22 Total: -26.31 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.71 Total: 15.17 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.71 -5.86 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716473414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.810 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds