Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46997 * 2 1 4 4 O 1.34255 * 126.52702 * 269.98057 * 3 2 1 5 5 C 1.34051 * 108.22992 * 180.02562 * 4 3 2 6 6 N 1.29935 * 109.24192 * 359.71372 * 5 4 3 7 7 C 1.36069 * 108.47479 * 0.45065 * 6 5 4 8 8 C 1.47422 * 126.44867 * 179.82051 * 7 6 5 9 9 O 1.21611 * 120.00387 * 179.68397 * 8 7 6 10 10 N 1.34776 * 119.99792 * 359.69262 * 8 7 6 11 11 C 1.46505 * 119.99805 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46996 * 34.60620 * 11 10 8 13 13 C 1.52992 * 109.47268 * 274.60086 * 11 10 8 14 14 C 1.53000 * 109.46989 * 154.60064 * 11 10 8 15 15 N 1.46899 * 109.47264 * 305.18588 * 14 11 10 16 16 C 1.46905 * 111.00294 * 163.93550 * 15 14 11 17 17 C 1.46906 * 110.99953 * 287.88832 * 15 14 11 18 18 C 1.50700 * 109.46858 * 169.99850 * 17 15 14 19 19 O 1.21295 * 120.00357 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99593 * 180.02562 * 18 17 15 21 21 C 1.37103 * 120.00008 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99905 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99898 * 179.97438 * 21 20 18 24 24 N 1.31418 * 120.00023 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47258 * 89.99693 * 25 23 21 27 27 H 1.48501 * 109.47251 * 209.99965 * 25 23 21 28 28 H 1.48506 * 109.46923 * 329.99619 * 25 23 21 29 29 H 1.09003 * 109.47365 * 299.99920 * 1 2 3 30 30 H 1.08998 * 109.47602 * 60.00181 * 1 2 3 31 31 H 1.09006 * 109.46642 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 240.00080 * 2 1 3 33 33 H 1.08998 * 109.47602 * 119.99819 * 2 1 3 34 34 H 1.07995 * 125.38146 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47064 * 59.99967 * 13 11 10 37 37 H 1.08999 * 109.47238 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.47349 * 300.00555 * 13 11 10 39 39 H 1.09002 * 109.47253 * 65.18246 * 14 11 10 40 40 H 1.08995 * 109.47269 * 185.18306 * 14 11 10 41 41 H 1.09002 * 109.46625 * 54.89006 * 16 15 14 42 42 H 1.08998 * 109.47480 * 174.89150 * 16 15 14 43 43 H 1.08999 * 109.47170 * 294.89778 * 16 15 14 44 44 H 1.08995 * 109.47202 * 290.00142 * 17 15 14 45 45 H 1.09001 * 109.46395 * 50.00138 * 17 15 14 46 46 H 0.96999 * 120.00296 * 359.97438 * 20 18 17 47 47 H 0.96998 * 120.00293 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2990 2.1741 -1.0788 5 6 2.7236 3.3739 -0.6580 6 7 2.7249 3.3962 0.6412 7 6 2.3024 2.1845 1.0936 8 6 2.1582 1.7776 2.5032 9 8 1.7627 0.6605 2.7763 10 7 2.4644 2.6438 3.4893 11 6 2.3206 2.2396 4.8901 12 1 2.5652 1.1822 4.9901 13 6 0.8783 2.4746 5.3432 14 6 3.2695 3.0669 5.7596 15 7 4.6403 2.9388 5.2472 16 6 5.5078 3.9899 5.7956 17 6 5.1859 1.6047 5.5310 18 6 6.4833 1.4237 4.7861 19 8 6.9116 2.3182 4.0878 20 7 7.1677 0.2678 4.8957 21 6 8.3483 0.1033 4.2184 22 1 8.7297 0.8998 3.5967 23 6 9.0542 -1.0881 4.3319 24 7 10.1856 -1.2461 3.6823 25 14 8.3942 -2.4660 5.4067 26 1 7.5190 -3.3503 4.5960 27 1 9.5280 -3.2557 5.9509 28 1 7.6109 -1.8873 6.5279 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0136 4.1943 -1.2977 35 1 2.7801 3.5348 3.2716 36 1 0.2023 1.8852 4.7238 37 1 0.7712 2.1735 6.3853 38 1 0.6337 3.5321 5.2432 39 1 2.9678 4.1139 5.7321 40 1 3.2303 2.7044 6.7868 41 1 5.4610 3.9682 6.8844 42 1 6.5347 3.8188 5.4726 43 1 5.1713 4.9626 5.4368 44 1 5.3647 1.5055 6.6016 45 1 4.4733 0.8449 5.2097 46 1 6.8254 -0.4474 5.4544 47 1 10.6782 -2.0779 3.7612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716473414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = -70.861651 kcal Electronic energy + Delta-G solvation = -30260.808379 eV Core-core repulsion = 26058.544464 eV Total energy + Delta-G solvation = -4202.263915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.43381 -40.89657 -40.33212 -38.33478 -36.22255 -35.89936 -35.60228 -34.99935 -33.76621 -32.11752 -30.13362 -29.74349 -27.97894 -26.50270 -25.83601 -24.58581 -23.70509 -22.77240 -21.70036 -21.46226 -21.14702 -20.14923 -19.24352 -17.91471 -17.84794 -17.43100 -17.06146 -16.82664 -16.67936 -16.09882 -15.77192 -15.76043 -15.66497 -15.34042 -15.10967 -14.98350 -14.73612 -14.46688 -14.35807 -14.12213 -13.59181 -13.57584 -13.42978 -13.16031 -12.93039 -12.85429 -12.69721 -12.67694 -12.47145 -12.43290 -12.37486 -12.18646 -11.99895 -11.78237 -11.67687 -11.47995 -11.08947 -10.37018 -10.24551 -10.15026 -9.81872 -9.19285 -8.43129 -6.03326 0.07096 1.08641 1.26865 1.32839 1.40795 1.58058 1.94321 2.16196 2.20405 2.33963 2.63901 3.12268 3.14431 3.22216 3.56751 3.76615 3.84578 4.04129 4.07823 4.17679 4.23885 4.29451 4.31228 4.33770 4.46358 4.55735 4.57075 4.64723 4.71111 4.77526 4.79295 4.83972 4.93525 5.03809 5.10462 5.20169 5.21066 5.23967 5.31364 5.50736 5.56255 5.88272 6.00565 6.19634 6.35440 6.58296 6.65785 6.86960 7.19351 7.38186 7.95653 8.74643 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.003665 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.550748 B = 7637.396371 C = 8830.725689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C 0.037 3.963 4 O -0.200 6.200 5 C 0.189 3.811 6 N -0.492 5.492 7 C -0.101 4.101 8 C 0.596 3.404 9 O -0.564 6.564 10 N -0.683 5.683 11 C 0.141 3.859 12 H 0.070 0.930 13 C -0.150 4.150 14 C 0.050 3.950 15 N -0.537 5.537 16 C 0.030 3.970 17 C 0.054 3.946 18 C 0.452 3.548 19 O -0.601 6.601 20 N -0.595 5.595 21 C -0.326 4.326 22 H 0.055 0.945 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.233 1.233 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.302 0.698 35 H 0.411 0.589 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 6.439 0.197 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.020 4.020 4 O -0.087 6.087 5 C -0.040 4.040 6 N -0.220 5.220 7 C -0.220 4.220 8 C 0.382 3.618 9 O -0.445 6.445 10 N -0.332 5.332 11 C 0.036 3.964 12 H 0.088 0.912 13 C -0.209 4.209 14 C -0.077 4.077 15 N -0.262 5.262 16 C -0.118 4.118 17 C -0.077 4.077 18 C 0.240 3.760 19 O -0.485 6.485 20 N -0.237 5.237 21 C -0.455 4.455 22 H 0.073 0.927 23 C -0.211 4.211 24 N -0.575 5.575 25 Si 0.780 3.220 26 H -0.185 1.185 27 H -0.196 1.196 28 H -0.156 1.156 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.317 0.683 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.222 0.778 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.067 6.745 -0.220 24.995 hybrid contribution 0.774 -0.899 0.380 1.246 sum -23.293 5.846 0.161 24.016 Atomic orbital electron populations 1.21637 0.91686 1.03815 1.01917 1.20441 0.98128 0.84505 1.05441 1.24121 0.98323 0.96180 0.83396 1.84384 1.63747 1.24689 1.35838 1.29131 0.96653 0.87166 0.91031 1.70709 1.18154 1.21415 1.11767 1.21599 1.11937 0.92596 0.95873 1.16891 0.77204 0.84356 0.83380 1.90723 1.49228 1.20776 1.83728 1.45612 1.65000 1.17088 1.05511 1.21182 0.96125 0.99438 0.79634 0.91167 1.22054 0.93704 1.02690 1.02427 1.22565 0.86155 1.02035 0.96981 1.61436 1.02650 1.01369 1.60709 1.22380 0.97660 0.94662 0.97050 1.21813 0.93464 0.93712 0.98725 1.20864 0.87508 0.82441 0.85216 1.90516 1.71320 1.42717 1.43901 1.42070 1.21326 1.15626 1.44677 1.18984 0.98542 1.02042 1.25939 0.92665 1.26050 0.95642 1.00399 0.99039 1.69798 1.16208 1.27947 1.43529 0.85426 0.79162 0.78085 0.79277 1.18504 1.19598 1.15604 0.93533 0.91597 0.89407 0.87957 0.88438 0.68303 0.75311 0.93478 0.89278 0.91072 0.87893 0.90536 0.94169 0.93337 0.90281 0.90140 0.88139 0.77797 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.05 -1.07 5.93 29.85 0.18 -0.89 16 3 C 0.04 0.98 6.69 25.19 0.17 1.15 16 4 O -0.20 -4.56 10.73 0.39 0.00 -4.56 16 5 C 0.19 3.76 13.19 130.52 1.72 5.48 16 6 N -0.49 -13.66 11.06 -305.15 -3.37 -17.04 16 7 C -0.10 -3.09 6.99 40.41 0.28 -2.81 16 8 C 0.60 18.99 7.78 86.66 0.67 19.66 16 9 O -0.56 -19.46 14.46 -4.07 -0.06 -19.52 16 10 N -0.68 -18.70 4.79 -445.81 -2.14 -20.83 16 11 C 0.14 3.14 2.52 44.99 0.11 3.25 16 12 H 0.07 1.85 6.22 -2.39 -0.01 1.83 16 13 C -0.15 -2.49 9.49 71.98 0.68 -1.81 16 14 C 0.05 0.99 4.53 86.30 0.39 1.38 16 15 N -0.54 -15.85 4.17 -927.03 -3.87 -19.72 16 16 C 0.03 0.88 9.19 127.69 1.17 2.05 16 17 C 0.05 1.78 5.30 85.56 0.45 2.24 16 18 C 0.45 21.38 7.42 87.66 0.65 22.03 16 19 O -0.60 -34.03 13.96 -3.08 -0.04 -34.07 16 20 N -0.59 -29.49 5.09 -306.98 -1.56 -31.05 16 21 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 22 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 24 N -0.93 -57.47 13.96 21.66 0.30 -57.17 16 25 Si 0.96 40.32 27.74 68.60 1.90 42.22 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.23 -8.31 6.52 99.48 0.65 -7.66 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.61 6.48 -2.39 -0.02 2.59 16 34 H 0.30 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.41 11.26 8.33 -92.71 -0.77 10.48 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 1.63 7.99 -2.39 -0.02 1.61 16 40 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16 41 H 0.04 0.95 8.13 -2.39 -0.02 0.93 16 42 H 0.05 1.89 5.79 -2.39 -0.01 1.87 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 45 H 0.10 3.11 6.50 -2.39 -0.02 3.09 16 46 H 0.39 16.21 5.76 -92.71 -0.53 15.67 16 47 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -85.61 391.55 -0.66 -86.27 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -0.35 Total: 44.50 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 8.52 Total: 30.97 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -10.64 Total: -145.82 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.10 Total: -58.14 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.90 Total: 42.22 kcal Total: -85.61 -0.66 -86.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716473414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.408 kcal (2) G-P(sol) polarization free energy of solvation -85.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds