Wall clock time and date at job start Tue Mar 31 2020 22:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47077 * 2 1 4 4 O 1.33498 * 126.83103 * 269.97772 * 3 2 1 5 5 N 1.20654 * 113.15770 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.30326 * 359.97438 * 5 4 3 7 7 C 1.37358 * 126.83034 * 90.00345 * 3 2 1 8 8 C 1.47407 * 128.56533 * 359.97438 * 7 3 2 9 9 O 1.21609 * 119.99403 * 351.16393 * 8 7 3 10 10 N 1.34767 * 120.00200 * 171.16369 * 8 7 3 11 11 C 1.46508 * 119.99871 * 1.00644 * 10 8 7 12 12 C 1.46493 * 120.00142 * 181.00596 * 10 8 7 13 13 C 1.53005 * 109.47315 * 89.99945 * 12 10 8 14 14 C 1.53001 * 109.47212 * 180.02562 * 13 12 10 15 15 N 1.46896 * 109.46792 * 180.02562 * 14 13 12 16 16 C 1.46905 * 111.00013 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47477 * 179.97438 * 16 15 14 18 18 O 1.21300 * 119.99854 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00213 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99923 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00223 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99600 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99804 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00480 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46861 * 89.99948 * 24 22 20 26 26 H 1.48500 * 109.47223 * 210.00128 * 24 22 20 27 27 H 1.48500 * 109.46722 * 330.00161 * 24 22 20 28 28 H 1.09008 * 109.47065 * 299.99755 * 1 2 3 29 29 H 1.08998 * 109.47378 * 59.99896 * 1 2 3 30 30 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47186 * 240.00016 * 2 1 3 32 32 H 1.08998 * 109.47378 * 120.00104 * 2 1 3 33 33 H 1.08002 * 127.33534 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46884 * 83.42473 * 11 10 8 35 35 H 1.09004 * 109.46951 * 203.41874 * 11 10 8 36 36 H 1.08995 * 109.47041 * 323.41900 * 11 10 8 37 37 H 1.09006 * 109.47284 * 210.00120 * 12 10 8 38 38 H 1.09002 * 109.47531 * 330.00052 * 12 10 8 39 39 H 1.08994 * 109.46705 * 300.00268 * 13 12 10 40 40 H 1.09007 * 109.46581 * 60.00070 * 13 12 10 41 41 H 1.09005 * 109.46772 * 299.99901 * 14 13 12 42 42 H 1.08995 * 109.47288 * 60.00067 * 14 13 12 43 43 H 1.00897 * 111.00632 * 56.04326 * 15 14 13 44 44 H 1.09005 * 109.46536 * 299.99513 * 16 15 14 45 45 H 1.08997 * 109.46984 * 59.98925 * 16 15 14 46 46 H 0.96994 * 120.00005 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00434 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1752 -1.0685 5 7 2.6906 3.2803 -0.7833 6 6 2.7550 3.4645 0.5021 7 6 2.3068 2.1971 1.0994 8 6 2.1825 1.8468 2.5259 9 8 1.6428 0.8069 2.8517 10 7 2.6670 2.6789 3.4688 11 6 3.2976 3.9420 3.0771 12 6 2.5632 2.3204 4.8854 13 6 3.8067 1.5340 5.3050 14 6 3.6980 1.1590 6.7844 15 7 4.8922 0.4045 7.1873 16 6 4.8224 0.0261 8.6050 17 6 6.0613 -0.7451 8.9808 18 8 6.9181 -0.9589 8.1492 19 7 6.2174 -1.1971 10.2408 20 6 7.3444 -1.8992 10.5825 21 1 8.1068 -2.0903 9.8419 22 6 7.5051 -2.3657 11.8814 23 7 8.5855 -3.0382 12.2091 24 14 6.1860 -2.0357 13.1623 25 1 5.1974 -3.1437 13.1514 26 1 6.8124 -1.9443 14.5057 27 1 5.4998 -0.7569 12.8480 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 3.0705 4.3577 1.0209 34 1 2.5286 4.6982 2.9189 35 1 3.9734 4.2708 3.8666 36 1 3.8597 3.7967 2.1547 37 1 2.4874 3.2275 5.4851 38 1 1.6757 1.7069 5.0409 39 1 3.8824 0.6270 4.7053 40 1 4.6942 2.1475 5.1495 41 1 3.6220 2.0659 7.3843 42 1 2.8106 0.5454 6.9394 43 1 5.7330 0.9274 6.9933 44 1 4.7536 0.9249 9.2179 45 1 3.9430 -0.5958 8.7722 46 1 5.5325 -1.0258 10.9059 47 1 8.6979 -3.3636 13.1159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716569897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:24 Heat of formation + Delta-G solvation = 6.702211 kcal Electronic energy + Delta-G solvation = -28254.389174 eV Core-core repulsion = 24055.488680 eV Total energy + Delta-G solvation = -4198.900494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.36608 -40.22032 -38.49180 -36.80302 -35.71249 -35.07295 -34.21569 -33.87899 -31.97736 -31.60295 -30.64395 -28.05980 -27.25866 -25.72503 -24.42183 -24.23976 -23.22806 -22.08575 -21.44742 -19.62035 -19.35818 -18.32551 -18.20246 -18.05190 -17.18013 -16.67262 -16.09919 -15.79132 -15.73359 -15.09766 -14.90827 -14.87181 -14.43546 -14.24853 -14.09469 -14.05330 -13.62859 -13.50548 -13.15219 -13.04858 -12.79716 -12.46214 -12.29140 -12.28628 -12.15562 -11.94324 -11.83878 -11.77552 -11.47838 -11.34645 -11.16289 -10.85039 -10.82914 -10.59372 -10.38980 -9.97185 -9.90070 -9.56797 -9.10978 -8.58430 -8.18841 -8.12751 -6.30539 -3.81983 0.63933 1.33710 2.27949 2.57030 2.79495 3.02497 3.07427 3.15206 3.73695 3.74937 3.82802 4.07974 4.09426 4.12599 4.33238 4.54508 4.64315 4.74456 4.76032 4.77961 4.87091 4.89127 5.02924 5.13079 5.16700 5.18852 5.20944 5.28881 5.33494 5.38807 5.44533 5.57931 5.61753 5.63221 5.78724 5.81470 5.91067 5.97500 5.99816 6.21843 6.87120 7.10840 7.57690 7.59592 7.68075 7.75085 8.15225 8.60526 8.95601 9.43062 9.83554 10.82599 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.001653 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.020475 B =16930.267276 C =17183.979543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.057 3.943 4 O 0.093 5.907 5 N -0.355 5.355 6 C 0.007 3.993 7 C -0.264 4.264 8 C 0.597 3.403 9 O -0.524 6.524 10 N -0.606 5.606 11 C 0.059 3.941 12 C 0.119 3.881 13 C -0.133 4.133 14 C 0.064 3.936 15 N -0.669 5.669 16 C 0.049 3.951 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.213 0.787 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.350 0.650 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.731 15.956 -21.380 32.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.007 4.007 4 O 0.033 5.967 5 N -0.060 5.060 6 C -0.176 4.176 7 C -0.272 4.272 8 C 0.386 3.614 9 O -0.401 6.401 10 N -0.339 5.339 11 C -0.084 4.084 12 C -0.004 4.004 13 C -0.172 4.172 14 C -0.067 4.067 15 N -0.302 5.302 16 C -0.084 4.084 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.229 0.771 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.279 15.291 -22.900 33.050 hybrid contribution -0.652 1.071 2.481 2.780 sum -18.931 16.362 -20.419 32.296 Atomic orbital electron populations 1.21707 0.92641 1.03267 1.02603 1.20411 0.97399 0.85267 1.05724 1.24980 0.94501 0.96151 0.85074 1.84585 1.61067 1.17646 1.33393 1.73702 1.16069 0.98512 1.17752 1.27135 1.01080 0.99873 0.89464 1.22037 1.14300 0.95487 0.95333 1.16809 0.78260 0.83271 0.83094 1.90822 1.43485 1.24016 1.81791 1.47543 1.59126 1.20500 1.06725 1.22418 0.98097 0.85303 1.02594 1.21520 0.99670 1.00118 0.79043 1.21907 0.97482 1.01156 0.96610 1.21854 0.94576 0.95856 0.94372 1.60005 1.04517 1.47526 1.18136 1.21702 0.98759 0.98918 0.89043 1.19726 0.88728 0.84969 0.83049 1.90567 1.44277 1.60606 1.49202 1.42205 1.20525 1.50894 1.09418 1.19436 0.97448 1.29186 0.97305 0.86292 1.25045 0.96970 0.96984 0.97218 1.69623 1.26169 1.36264 1.20101 0.86659 0.81872 0.78743 0.82027 1.19572 1.20202 1.19553 0.91652 0.92391 0.90771 0.88996 0.86811 0.77080 0.91980 0.90050 0.90079 0.90241 0.89256 0.90272 0.91828 0.95534 0.90816 0.83095 0.93801 0.89421 0.79686 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.05 -0.34 5.99 -27.88 -0.17 -0.51 16 3 C 0.06 0.49 6.80 -34.63 -0.24 0.25 16 4 O 0.09 0.84 11.06 18.64 0.21 1.04 16 5 N -0.36 -3.31 12.01 31.81 0.38 -2.93 16 6 C 0.01 0.05 10.24 -14.73 -0.15 -0.10 16 7 C -0.26 -2.37 6.21 -102.89 -0.64 -3.01 16 8 C 0.60 6.14 7.67 -12.53 -0.10 6.04 16 9 O -0.52 -6.80 14.95 5.27 0.08 -6.72 16 10 N -0.61 -4.89 2.87 -182.85 -0.53 -5.41 16 11 C 0.06 0.27 8.80 59.85 0.53 0.80 16 12 C 0.12 0.96 5.38 -4.04 -0.02 0.94 16 13 C -0.13 -1.33 5.80 -26.73 -0.15 -1.49 16 14 C 0.06 0.71 5.69 -3.83 -0.02 0.69 16 15 N -0.67 -10.46 6.12 -115.06 -0.70 -11.17 16 16 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 17 C 0.45 10.34 7.82 -10.99 -0.09 10.25 16 18 O -0.56 -15.41 15.78 5.54 0.09 -15.32 16 19 N -0.59 -14.20 5.09 -10.97 -0.06 -14.26 16 20 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 24 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.93 6.98 -51.93 -0.36 0.57 16 33 H 0.21 0.85 5.10 -52.49 -0.27 0.58 16 34 H 0.06 0.18 7.82 -51.93 -0.41 -0.22 16 35 H 0.08 0.29 8.02 -51.93 -0.42 -0.13 16 36 H 0.08 0.34 4.74 -51.93 -0.25 0.09 16 37 H 0.08 0.46 8.07 -51.93 -0.42 0.05 16 38 H 0.09 0.83 7.41 -51.93 -0.38 0.44 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -36.00 391.90 -6.38 -42.37 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.85 Total: 10.59 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.96 Total: 6.29 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.13 Total: -58.86 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.37 Total: -20.99 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.00 -6.38 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716569897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.073 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds