Wall clock time and date at job start Tue Mar 31 2020 21:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29945 * 126.28532 * 2 1 4 4 O 1.21303 * 110.24948 * 179.72031 * 3 2 1 5 5 C 1.33644 * 109.81261 * 0.47068 * 4 3 2 6 6 C 1.50693 * 126.55149 * 179.79832 * 5 4 3 7 7 C 1.53006 * 109.47071 * 269.68781 * 6 5 4 8 8 C 1.53004 * 109.46841 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46825 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99922 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.47150 * 120.98437 * 359.97260 * 11 9 8 13 13 C 1.53296 * 108.38528 * 129.48936 * 12 11 9 14 14 O 1.42964 * 109.22135 * 52.30224 * 13 12 11 15 15 C 1.42960 * 114.16740 * 297.41748 * 14 13 12 16 16 H 1.09002 * 109.51546 * 302.65996 * 15 14 13 17 17 C 1.53000 * 109.55157 * 182.52892 * 15 14 13 18 18 N 1.46499 * 109.46935 * 65.13322 * 17 15 14 19 19 C 1.36944 * 119.99890 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99636 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00391 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99700 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46921 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47264 * 119.99722 * 23 21 19 26 26 H 1.48503 * 109.47178 * 240.00026 * 23 21 19 27 27 C 1.47152 * 120.98150 * 180.02562 * 11 9 8 28 28 N 1.31128 * 106.89494 * 359.53761 * 5 4 3 29 29 H 1.09004 * 109.47748 * 269.97633 * 1 2 3 30 30 H 1.09002 * 109.47172 * 29.97819 * 1 2 3 31 31 H 1.09004 * 109.46998 * 149.97667 * 1 2 3 32 32 H 1.09007 * 109.47153 * 149.69010 * 6 5 4 33 33 H 1.09001 * 109.47504 * 29.68721 * 6 5 4 34 34 H 1.08995 * 109.47274 * 59.99922 * 7 6 5 35 35 H 1.09002 * 109.47107 * 299.99794 * 7 6 5 36 36 H 1.09001 * 109.47165 * 59.99950 * 8 7 6 37 37 H 1.09002 * 109.46824 * 299.99627 * 8 7 6 38 38 H 1.08996 * 109.68517 * 249.21362 * 12 11 9 39 39 H 1.08997 * 109.67801 * 9.76724 * 12 11 9 40 40 H 1.08997 * 109.51548 * 172.22770 * 13 12 11 41 41 H 1.09000 * 109.51318 * 292.32957 * 13 12 11 42 42 H 1.09008 * 109.46824 * 185.12602 * 17 15 14 43 43 H 1.08992 * 109.47655 * 305.12945 * 17 15 14 44 44 H 0.97002 * 120.00231 * 359.97438 * 18 17 15 45 45 H 0.97001 * 120.00118 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.68438 * 110.78717 * 27 11 9 47 47 H 1.09001 * 109.71355 * 350.24576 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0056 5 6 3.5299 -0.6211 -0.0006 6 6 4.7969 -1.4369 -0.0011 7 6 5.2254 -1.7127 -1.4438 8 6 6.5115 -2.5414 -1.4442 9 6 6.9339 -2.8125 -2.8652 10 8 6.2712 -2.3854 -3.7868 11 7 8.0474 -3.5305 -3.1119 12 6 8.8672 -4.0595 -2.0103 13 6 9.1102 -5.5520 -2.2620 14 8 9.6306 -5.7281 -3.5819 15 6 8.7416 -5.3129 -4.6217 16 1 7.8002 -5.8553 -4.5341 17 6 9.3748 -5.6048 -5.9836 18 7 9.5172 -7.0527 -6.1556 19 6 10.0631 -7.5551 -7.3067 20 1 10.3890 -6.8838 -8.0875 21 6 10.1984 -8.9269 -7.4694 22 7 9.8026 -9.7448 -6.5173 23 14 10.9438 -9.6122 -9.0393 24 1 11.3067 -8.4925 -9.9447 25 1 12.1615 -10.3951 -8.7085 26 1 9.9562 -10.4937 -9.7124 27 6 8.4801 -3.8077 -4.4908 28 7 2.3030 -1.0841 -0.0004 29 1 -0.3635 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.6208 -2.3820 0.5126 33 1 5.5844 -0.8854 0.5127 34 1 5.4015 -0.7676 -1.9575 35 1 4.4380 -2.2642 -1.9575 36 1 6.3350 -3.4865 -0.9306 37 1 7.2991 -1.9902 -0.9304 38 1 9.8209 -3.5329 -1.9766 39 1 8.3408 -3.9276 -1.0650 40 1 9.8272 -5.9320 -1.5343 41 1 8.1703 -6.0954 -2.1650 42 1 8.7380 -5.2060 -6.7733 43 1 10.3566 -5.1344 -6.0362 44 1 9.2248 -7.6556 -5.4542 45 1 9.8976 -10.7035 -6.6309 46 1 9.3949 -3.2557 -4.7065 47 1 7.6978 -3.5089 -5.1886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717186833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:36 Heat of formation + Delta-G solvation = -31.499924 kcal Electronic energy + Delta-G solvation = -28450.090548 eV Core-core repulsion = 24249.533485 eV Total energy + Delta-G solvation = -4200.557063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.63953 -41.41814 -39.57738 -37.23591 -36.66211 -36.36884 -35.70960 -33.99777 -33.50975 -31.89311 -30.31886 -29.70604 -28.94922 -27.09599 -25.13777 -24.72344 -24.11542 -23.38250 -22.25242 -21.97267 -20.06905 -19.24400 -19.17157 -18.56668 -18.11873 -17.70096 -17.07898 -17.03427 -16.65575 -16.06981 -16.03342 -15.84640 -15.52679 -15.02686 -15.01928 -14.83556 -14.50121 -14.33155 -14.24271 -14.02816 -13.91356 -13.50216 -13.39418 -13.35338 -13.04957 -12.83026 -12.79197 -12.63149 -12.42867 -12.28792 -12.20599 -12.10586 -12.01563 -11.86693 -11.72559 -11.59813 -11.16216 -10.97418 -10.93269 -10.77622 -9.58209 -9.01618 -7.94839 -5.24409 0.10400 1.15556 1.47824 1.49194 1.59297 1.60580 1.77230 1.94227 2.56172 2.69255 2.79527 3.05977 3.39309 3.44673 3.59796 3.78371 3.92710 3.99217 4.01730 4.08277 4.13195 4.19948 4.31843 4.38832 4.44104 4.47426 4.50936 4.53786 4.58942 4.65268 4.68493 4.71542 4.79923 4.85060 4.90162 4.93908 4.98638 5.05309 5.09934 5.14651 5.25218 5.35327 5.48364 6.25458 6.29048 6.37263 7.12636 7.12814 7.32943 8.06448 8.31369 9.29031 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.001678 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.786759 B =16684.059676 C =17130.416589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.158 3.842 3 N -0.415 5.415 4 O 0.067 5.933 5 C 0.193 3.807 6 C -0.021 4.021 7 C -0.098 4.098 8 C -0.127 4.127 9 C 0.506 3.494 10 O -0.591 6.591 11 N -0.617 5.617 12 C 0.076 3.924 13 C 0.032 3.968 14 O -0.391 6.391 15 C 0.090 3.910 16 H 0.045 0.955 17 C 0.159 3.841 18 N -0.740 5.740 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.977 3.023 24 H -0.265 1.265 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.094 3.906 28 N -0.510 5.510 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.031 0.969 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.085 0.915 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 20.401 22.239 31.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.127 5.127 4 O 0.011 5.989 5 C -0.027 4.027 6 C -0.059 4.059 7 C -0.137 4.137 8 C -0.166 4.166 9 C 0.297 3.703 10 O -0.472 6.472 11 N -0.350 5.350 12 C -0.046 4.046 13 C -0.045 4.045 14 O -0.310 6.310 15 C 0.031 3.969 16 H 0.063 0.937 17 C 0.032 3.968 18 N -0.383 5.383 19 C -0.380 4.380 20 H 0.096 0.904 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.030 4.030 28 N -0.245 5.245 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.110 0.890 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.164 21.105 21.565 32.174 hybrid contribution 0.056 -0.877 -1.030 1.354 sum -11.108 20.228 20.535 30.891 Atomic orbital electron populations 1.20332 0.80827 1.05511 1.05565 1.26608 1.02137 0.83229 0.99446 1.74627 0.89948 1.24845 1.23232 1.85248 1.22053 1.25566 1.66001 1.29582 0.97895 0.81908 0.93330 1.20559 0.87253 0.99348 0.98732 1.21215 0.96994 1.00713 0.94775 1.21740 0.99280 1.04366 0.91205 1.21620 0.78786 0.76464 0.93399 1.90710 1.54519 1.53246 1.48711 1.48328 1.26088 1.53436 1.07169 1.22759 0.97207 0.93902 0.90712 1.23297 1.00786 0.95965 0.84401 1.88094 1.42618 1.85157 1.15112 1.22412 0.92440 0.93692 0.88376 0.93699 1.20772 0.97948 0.85379 0.92743 1.42421 1.74839 1.01694 1.19323 1.19713 1.31807 0.91054 0.95409 0.90431 1.25612 1.03226 0.96401 1.01576 1.69840 1.54801 1.02274 1.35046 0.85022 0.77240 0.78140 0.79016 1.18969 1.21864 1.21972 1.22009 1.01388 0.94709 0.84909 1.71942 1.00735 1.29971 1.21806 0.87647 0.88657 0.88288 0.84708 0.83866 0.91917 0.93020 0.85107 0.84058 0.88965 0.84020 0.85448 0.93105 0.94204 0.95151 0.79345 0.93978 0.89711 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 71.23 0.75 0.04 16 2 C 0.16 3.03 8.22 138.46 1.14 4.17 16 3 N -0.41 -8.91 12.16 -60.31 -0.73 -9.64 16 4 O 0.07 1.25 11.31 74.82 0.85 2.10 16 5 C 0.19 2.93 7.77 88.38 0.69 3.62 16 6 C -0.02 -0.11 5.84 29.85 0.17 0.06 16 7 C -0.10 -1.09 4.49 30.60 0.14 -0.96 16 8 C -0.13 -0.97 4.07 29.85 0.12 -0.84 16 9 C 0.51 10.39 7.71 87.66 0.68 11.07 16 10 O -0.59 -18.34 15.45 -3.04 -0.05 -18.39 16 11 N -0.62 -12.67 3.02 -817.28 -2.47 -15.13 16 12 C 0.08 0.96 6.54 86.35 0.56 1.52 16 13 C 0.03 0.65 6.99 72.08 0.50 1.15 16 14 O -0.39 -12.88 10.34 -148.98 -1.54 -14.42 16 15 C 0.09 3.04 2.81 30.71 0.09 3.13 16 16 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 17 C 0.16 6.61 5.93 86.38 0.51 7.12 16 18 N -0.74 -39.40 5.55 -343.45 -1.91 -41.30 16 19 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 23 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C 0.09 2.58 5.93 86.37 0.51 3.09 16 28 N -0.51 -9.99 11.55 -303.21 -3.50 -13.49 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.13 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.14 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.13 0.29 7.66 -2.39 -0.02 0.27 16 37 H 0.14 0.00 8.02 -2.39 -0.02 -0.01 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.14 0.40 6.05 -2.39 -0.01 0.38 16 40 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.37 21.38 7.67 -92.71 -0.71 20.67 16 45 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.09 2.61 7.08 -2.39 -0.02 2.60 16 Total: -1.00 -86.69 392.12 0.40 -86.29 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.28 Total: 19.67 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.17 Total: 15.69 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -8.33 Total: -139.87 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.74 Total: -30.72 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -86.69 0.40 -86.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717186833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.786 kcal (2) G-P(sol) polarization free energy of solvation -86.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds