Wall clock time and date at job start Tue Mar 31 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30616 * 125.42451 * 2 1 4 4 C 1.33694 * 108.99186 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.26885 * 180.02562 * 4 3 2 6 6 C 1.36338 * 107.45333 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.64004 * 180.02562 * 6 4 3 8 8 O 1.21677 * 120.00208 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99845 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00077 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46592 * 324.99831 * 10 9 7 12 12 C 1.53004 * 109.46859 * 84.99585 * 10 9 7 13 13 C 1.52997 * 109.47238 * 204.99471 * 10 9 7 14 14 H 1.09000 * 109.47101 * 300.00290 * 13 10 9 15 15 C 1.52998 * 109.47018 * 59.99763 * 13 10 9 16 16 N 1.46895 * 109.47145 * 179.97438 * 13 10 9 17 17 C 1.46900 * 111.00010 * 155.00264 * 16 13 10 18 18 C 1.50704 * 109.47399 * 180.02562 * 17 16 13 19 19 O 1.21297 * 119.99573 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00137 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99801 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00226 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99864 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99882 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99985 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47097 * 89.99604 * 25 23 21 27 27 H 1.48500 * 109.47141 * 209.99497 * 25 23 21 28 28 H 1.48496 * 109.47089 * 329.99721 * 25 23 21 29 29 O 1.33664 * 125.41540 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46789 * 90.01991 * 1 2 3 31 31 H 1.08996 * 109.47118 * 210.02338 * 1 2 3 32 32 H 1.09002 * 109.46729 * 330.02462 * 1 2 3 33 33 H 1.08999 * 109.47247 * 90.02958 * 5 4 3 34 34 H 1.09005 * 109.47057 * 210.02915 * 5 4 3 35 35 H 1.09000 * 109.47416 * 330.02280 * 5 4 3 36 36 H 0.96998 * 120.00195 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47366 * 299.99715 * 12 10 9 38 38 H 1.08994 * 109.47415 * 60.00259 * 12 10 9 39 39 H 1.09006 * 109.47015 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47543 * 179.97438 * 15 13 10 41 41 H 1.08996 * 109.47453 * 300.00111 * 15 13 10 42 42 H 1.09011 * 109.47081 * 60.00013 * 15 13 10 43 43 H 1.00896 * 111.00258 * 278.95698 * 16 13 10 44 44 H 1.09004 * 109.46892 * 299.99934 * 17 16 13 45 45 H 1.08997 * 109.47110 * 60.00164 * 17 16 13 46 46 H 0.96999 * 120.00244 * 359.97438 * 20 18 17 47 47 H 0.96993 * 119.99451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2642 1.0644 0.0000 4 6 3.5465 0.6862 0.0006 5 6 4.7453 1.5993 0.0013 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0013 8 8 5.8718 -1.0293 0.0029 9 7 4.6315 -2.8728 0.0004 10 6 5.8224 -3.7261 0.0020 11 1 6.6090 -3.2531 -0.5860 12 6 6.3079 -3.9215 1.4397 13 6 5.4765 -5.0856 -0.6088 14 1 4.6899 -5.5585 -0.0208 15 6 4.9910 -4.8901 -2.0464 16 7 6.6708 -5.9409 -0.6078 17 6 6.3002 -7.3624 -0.6090 18 6 7.5484 -8.2070 -0.6073 19 8 8.6393 -7.6768 -0.6058 20 7 7.4524 -9.5512 -0.6076 21 6 8.5880 -10.3195 -0.6055 22 1 9.5593 -9.8475 -0.6041 23 6 8.4890 -11.7055 -0.6063 24 7 7.3070 -12.2799 -0.6085 25 14 10.0361 -12.7523 -0.6042 26 1 10.4439 -13.0303 0.7965 27 1 9.7678 -14.0337 -1.3051 28 1 11.1267 -12.0252 -1.3021 29 8 2.2817 -1.0893 -0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.0342 1.8189 1.0291 34 1 5.5737 1.1118 -0.5127 35 1 4.4952 2.5277 -0.5121 36 1 3.7480 -3.2732 -0.0005 37 1 6.5543 -2.9530 1.8749 38 1 5.5214 -4.3945 2.0277 39 1 7.1942 -4.5560 1.4409 40 1 4.7450 -5.8587 -2.4818 41 1 4.1050 -4.2553 -2.0476 42 1 5.7776 -4.4171 -2.6345 43 1 7.2721 -5.7233 -1.3882 44 1 5.7103 -7.5848 0.2802 45 1 5.7125 -7.5839 -1.4999 46 1 6.5800 -9.9752 -0.6085 47 1 7.2380 -13.2474 -0.6087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:39 Heat of formation + Delta-G solvation = -57.000211 kcal Electronic energy + Delta-G solvation = -28724.401672 eV Core-core repulsion = 24522.738834 eV Total energy + Delta-G solvation = -4201.662838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.83375 -40.06848 -38.48696 -37.30374 -35.78552 -34.56486 -33.83368 -33.21844 -31.32981 -30.91332 -29.77974 -29.64604 -27.63743 -26.32352 -24.28717 -23.71136 -22.41715 -22.09507 -20.82771 -20.81110 -19.31700 -18.48632 -17.91840 -17.45697 -16.56783 -16.26713 -15.89652 -15.32105 -15.11869 -14.81942 -14.71321 -14.52815 -14.07693 -13.90520 -13.87605 -13.64710 -13.53647 -13.52235 -13.38980 -13.14720 -13.08410 -12.49607 -12.41901 -12.24086 -12.18264 -11.63958 -11.58639 -11.48457 -11.38751 -11.33166 -11.23012 -11.05169 -10.75877 -10.40727 -10.38016 -10.23272 -9.52699 -9.49810 -9.09632 -8.49983 -8.10482 -7.97891 -6.43599 -3.84352 0.43450 1.97400 1.99340 2.78762 2.79884 3.16908 3.25715 3.31616 3.45335 3.88486 4.08382 4.28323 4.31874 4.35930 4.58496 4.74477 4.79472 4.85414 4.92266 5.07645 5.14779 5.15408 5.22816 5.24305 5.35727 5.38985 5.44414 5.52445 5.59987 5.60415 5.64458 5.78870 5.80615 5.94709 5.96604 5.99527 6.03209 6.20308 6.29509 6.49642 7.01662 7.12455 7.26161 7.53762 7.57553 7.77447 8.04416 8.59075 9.16162 9.52166 10.03435 10.74099 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028627 B = 0.001787 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.868382 B =15663.397322 C =16286.697500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.220 3.780 3 N -0.491 5.491 4 C 0.083 3.917 5 C -0.082 4.082 6 C -0.121 4.121 7 C 0.611 3.389 8 O -0.510 6.510 9 N -0.711 5.711 10 C 0.153 3.847 11 H 0.094 0.906 12 C -0.153 4.153 13 C 0.077 3.923 14 H 0.082 0.918 15 C -0.185 4.185 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 O -0.190 6.190 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.402 0.598 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.963 22.263 0.445 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.014 3.986 3 N -0.221 5.221 4 C -0.041 4.041 5 C -0.139 4.139 6 C -0.175 4.175 7 C 0.396 3.604 8 O -0.387 6.387 9 N -0.361 5.361 10 C 0.049 3.951 11 H 0.112 0.888 12 C -0.211 4.211 13 C -0.034 4.034 14 H 0.100 0.900 15 C -0.244 4.244 16 N -0.289 5.289 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 O -0.077 6.077 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.617 23.296 1.120 28.068 hybrid contribution -0.584 -1.959 -0.907 2.236 sum -16.201 21.337 0.213 26.792 Atomic orbital electron populations 1.20402 0.80671 1.05663 1.05215 1.26577 0.96687 0.78619 0.96669 1.70368 1.01670 1.29957 1.20139 1.22095 0.93450 0.91324 0.97212 1.20414 0.92189 0.97452 1.03854 1.22944 0.82335 0.95237 1.17029 1.16238 0.85369 0.81652 0.77153 1.90879 1.23577 1.73758 1.50527 1.45983 1.10869 1.05236 1.74037 1.21000 0.86407 0.89287 0.98412 0.88836 1.22053 1.02790 1.01897 0.94407 1.21740 0.93368 0.93061 0.95222 0.89964 1.22551 1.01928 1.02205 0.97728 1.59987 1.14994 1.02365 1.51579 1.21695 0.97001 0.88115 1.01204 1.19784 0.90024 0.83054 0.84575 1.90536 1.28439 1.72301 1.55322 1.41858 1.09613 1.04182 1.64365 1.19708 0.87784 0.87816 1.47552 0.87889 1.25269 0.98238 0.97156 0.97315 1.69613 1.22844 1.11250 1.50631 0.85851 0.81169 0.78818 0.78419 1.20378 1.20952 1.19417 1.84434 1.16212 1.37343 1.69693 0.88318 0.88814 0.87660 0.89878 0.88489 0.90446 0.76373 0.92950 0.93067 0.89172 0.92074 0.92338 0.92060 0.82629 0.89566 0.93746 0.77489 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.22 1.84 8.32 -12.79 -0.11 1.73 16 3 N -0.49 -5.21 11.26 -7.07 -0.08 -5.29 16 4 C 0.08 0.92 7.16 -82.47 -0.59 0.33 16 5 C -0.08 -0.76 9.87 36.00 0.36 -0.41 16 6 C -0.12 -1.33 7.18 -36.84 -0.26 -1.60 16 7 C 0.61 7.20 7.75 -12.83 -0.10 7.10 16 8 O -0.51 -7.24 14.46 5.21 0.08 -7.17 16 9 N -0.71 -7.08 4.38 -55.10 -0.24 -7.32 16 10 C 0.15 1.74 2.34 -67.93 -0.16 1.58 16 11 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 12 C -0.15 -1.89 9.33 37.16 0.35 -1.54 16 13 C 0.08 0.86 2.22 -67.72 -0.15 0.71 16 14 H 0.08 0.85 7.80 -51.93 -0.41 0.44 16 15 C -0.19 -1.85 9.00 37.16 0.33 -1.52 16 16 N -0.66 -9.77 5.11 -107.99 -0.55 -10.32 16 17 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 18 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 19 O -0.58 -15.49 15.78 5.54 0.09 -15.40 16 20 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 O -0.19 -1.79 10.57 4.42 0.05 -1.74 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.98 6.47 -51.93 -0.34 0.65 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 3.22 8.18 -40.82 -0.33 2.88 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.28 7.61 -51.93 -0.39 0.89 16 40 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 41 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 42 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 43 H 0.35 5.58 8.17 -39.29 -0.32 5.26 16 44 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 45 H 0.04 0.66 7.43 -51.93 -0.39 0.27 16 46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -33.41 398.09 -6.31 -39.72 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.98 Total: 13.75 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.31 Total: 9.50 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.21 Total: -60.59 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.21 Total: -24.31 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.41 -6.31 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.278 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds