Wall clock time and date at job start Tue Mar 31 2020 21:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30616 * 125.42451 * 2 1 4 4 C 1.33694 * 108.99186 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.26885 * 180.02562 * 4 3 2 6 6 C 1.36338 * 107.45333 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.64004 * 180.02562 * 6 4 3 8 8 O 1.21677 * 120.00208 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99845 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00077 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46592 * 324.99831 * 10 9 7 12 12 C 1.53004 * 109.46859 * 84.99585 * 10 9 7 13 13 C 1.52997 * 109.47238 * 204.99471 * 10 9 7 14 14 H 1.09000 * 109.47101 * 300.00290 * 13 10 9 15 15 C 1.52998 * 109.47018 * 59.99763 * 13 10 9 16 16 N 1.46895 * 109.47145 * 179.97438 * 13 10 9 17 17 C 1.46900 * 111.00010 * 155.00264 * 16 13 10 18 18 C 1.50704 * 109.47399 * 180.02562 * 17 16 13 19 19 O 1.21297 * 119.99573 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00137 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99801 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00226 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99864 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99882 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99985 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47097 * 89.99604 * 25 23 21 27 27 H 1.48500 * 109.47141 * 209.99497 * 25 23 21 28 28 H 1.48496 * 109.47089 * 329.99721 * 25 23 21 29 29 O 1.33664 * 125.41540 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46789 * 90.01991 * 1 2 3 31 31 H 1.08996 * 109.47118 * 210.02338 * 1 2 3 32 32 H 1.09002 * 109.46729 * 330.02462 * 1 2 3 33 33 H 1.08999 * 109.47247 * 90.02958 * 5 4 3 34 34 H 1.09005 * 109.47057 * 210.02915 * 5 4 3 35 35 H 1.09000 * 109.47416 * 330.02280 * 5 4 3 36 36 H 0.96998 * 120.00195 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47366 * 299.99715 * 12 10 9 38 38 H 1.08994 * 109.47415 * 60.00259 * 12 10 9 39 39 H 1.09006 * 109.47015 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47543 * 179.97438 * 15 13 10 41 41 H 1.08996 * 109.47453 * 300.00111 * 15 13 10 42 42 H 1.09011 * 109.47081 * 60.00013 * 15 13 10 43 43 H 1.00896 * 111.00258 * 278.95698 * 16 13 10 44 44 H 1.09004 * 109.46892 * 299.99934 * 17 16 13 45 45 H 1.08997 * 109.47110 * 60.00164 * 17 16 13 46 46 H 0.96999 * 120.00244 * 359.97438 * 20 18 17 47 47 H 0.96993 * 119.99451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2642 1.0644 0.0000 4 6 3.5465 0.6862 0.0006 5 6 4.7453 1.5993 0.0013 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0013 8 8 5.8718 -1.0293 0.0029 9 7 4.6315 -2.8728 0.0004 10 6 5.8224 -3.7261 0.0020 11 1 6.6090 -3.2531 -0.5860 12 6 6.3079 -3.9215 1.4397 13 6 5.4765 -5.0856 -0.6088 14 1 4.6899 -5.5585 -0.0208 15 6 4.9910 -4.8901 -2.0464 16 7 6.6708 -5.9409 -0.6078 17 6 6.3002 -7.3624 -0.6090 18 6 7.5484 -8.2070 -0.6073 19 8 8.6393 -7.6768 -0.6058 20 7 7.4524 -9.5512 -0.6076 21 6 8.5880 -10.3195 -0.6055 22 1 9.5593 -9.8475 -0.6041 23 6 8.4890 -11.7055 -0.6063 24 7 7.3070 -12.2799 -0.6085 25 14 10.0361 -12.7523 -0.6042 26 1 10.4439 -13.0303 0.7965 27 1 9.7678 -14.0337 -1.3051 28 1 11.1267 -12.0252 -1.3021 29 8 2.2817 -1.0893 -0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.0342 1.8189 1.0291 34 1 5.5737 1.1118 -0.5127 35 1 4.4952 2.5277 -0.5121 36 1 3.7480 -3.2732 -0.0005 37 1 6.5543 -2.9530 1.8749 38 1 5.5214 -4.3945 2.0277 39 1 7.1942 -4.5560 1.4409 40 1 4.7450 -5.8587 -2.4818 41 1 4.1050 -4.2553 -2.0476 42 1 5.7776 -4.4171 -2.6345 43 1 7.2721 -5.7233 -1.3882 44 1 5.7103 -7.5848 0.2802 45 1 5.7125 -7.5839 -1.4999 46 1 6.5800 -9.9752 -0.6085 47 1 7.2380 -13.2474 -0.6087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:38 Heat of formation + Delta-G solvation = -84.654747 kcal Electronic energy + Delta-G solvation = -28725.600863 eV Core-core repulsion = 24522.738834 eV Total energy + Delta-G solvation = -4202.862029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.54898 -41.01294 -40.15752 -38.50036 -36.56372 -36.02667 -35.40618 -33.83941 -33.26452 -32.02703 -30.66588 -30.30129 -28.44567 -27.86067 -25.84874 -24.75193 -23.17706 -22.86387 -21.80402 -21.63834 -21.05238 -19.91562 -19.35510 -18.18008 -17.74808 -17.52363 -16.86938 -16.67684 -16.37789 -16.06199 -15.94428 -15.53782 -15.36210 -15.19710 -15.03951 -14.66007 -14.35523 -14.27831 -14.10750 -13.94991 -13.86514 -13.53374 -13.49032 -13.39148 -13.22194 -13.15298 -12.99575 -12.73037 -12.58656 -12.40884 -12.27888 -12.12194 -12.07618 -12.00722 -11.71552 -11.49688 -11.29726 -10.44292 -10.31038 -10.00054 -9.85634 -9.30604 -8.46043 -5.94222 -0.32880 1.24968 1.26887 1.38325 1.42311 1.54592 1.91257 1.95291 2.07406 2.30398 2.86014 2.99560 3.21654 3.53112 3.55821 3.59445 3.70858 3.99436 4.18344 4.26509 4.30141 4.32026 4.45562 4.47915 4.54213 4.60262 4.62073 4.62379 4.65023 4.73222 4.76303 4.82097 4.86328 4.92858 4.99754 5.10883 5.19323 5.27215 5.31522 5.42174 5.45087 5.89196 6.09819 6.22463 6.35803 6.51565 6.61508 6.92082 7.14122 7.58163 8.13794 8.71237 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028627 B = 0.001787 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.868382 B =15663.397322 C =16286.697500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.232 3.768 3 N -0.519 5.519 4 C 0.074 3.926 5 C -0.080 4.080 6 C -0.140 4.140 7 C 0.611 3.389 8 O -0.542 6.542 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.074 0.926 12 C -0.147 4.147 13 C 0.085 3.915 14 H 0.102 0.898 15 C -0.179 4.179 16 N -0.671 5.671 17 C 0.069 3.931 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.274 1.274 29 O -0.189 6.189 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.346 0.654 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.563 22.154 0.402 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 N -0.250 5.250 4 C -0.050 4.050 5 C -0.137 4.137 6 C -0.195 4.195 7 C 0.397 3.603 8 O -0.421 6.421 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.092 0.908 12 C -0.205 4.205 13 C -0.025 4.025 14 H 0.120 0.880 15 C -0.238 4.238 16 N -0.303 5.303 17 C -0.063 4.063 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 O -0.076 6.076 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.251 0.749 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.165 0.835 44 H 0.126 0.874 45 H 0.088 0.912 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.278 23.182 1.080 29.540 hybrid contribution 0.125 -1.821 -0.880 2.026 sum -18.152 21.361 0.200 28.033 Atomic orbital electron populations 1.20766 0.77021 1.07267 1.06904 1.27699 0.98256 0.77786 0.93517 1.70410 1.01607 1.31045 1.21902 1.22401 0.94197 0.91731 0.96666 1.20408 0.91477 0.97629 1.04172 1.22680 0.82777 0.95050 1.18961 1.16335 0.85281 0.82018 0.76627 1.90862 1.24868 1.74375 1.52035 1.45763 1.11006 1.04565 1.73389 1.20778 0.86520 0.89541 0.97503 0.90784 1.21958 1.02317 1.01019 0.95208 1.21732 0.92290 0.92063 0.96456 0.88011 1.22483 1.02281 1.02653 0.96402 1.59936 1.16776 1.01933 1.51611 1.21545 0.93654 0.87787 1.03348 1.20923 0.91672 0.82813 0.82091 1.90508 1.30926 1.72998 1.56544 1.41921 1.09077 1.04943 1.65149 1.19649 0.87900 0.88874 1.49813 0.90426 1.26008 1.01227 0.97647 0.96386 1.69666 1.24139 1.11813 1.50423 0.84953 0.77552 0.77390 0.78600 1.19738 1.19537 1.19892 1.84434 1.15583 1.37664 1.69947 0.86324 0.86673 0.86510 0.89352 0.89644 0.89242 0.74863 0.93835 0.91758 0.91302 0.91783 0.90562 0.92952 0.83462 0.87405 0.91205 0.76918 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.23 3.40 8.32 88.29 0.73 4.13 16 3 N -0.52 -10.42 11.26 -291.06 -3.28 -13.70 16 4 C 0.07 1.61 7.16 41.83 0.30 1.91 16 5 C -0.08 -1.50 9.87 71.24 0.70 -0.80 16 6 C -0.14 -3.00 7.18 24.05 0.17 -2.83 16 7 C 0.61 14.26 7.75 86.46 0.67 14.93 16 8 O -0.54 -15.80 14.46 -4.28 -0.06 -15.86 16 9 N -0.70 -13.02 4.38 -446.46 -1.95 -14.98 16 10 C 0.16 3.56 2.34 44.99 0.11 3.67 16 11 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 12 C -0.15 -3.57 9.33 71.98 0.67 -2.90 16 13 C 0.09 1.74 2.22 44.91 0.10 1.84 16 14 H 0.10 1.74 7.80 -2.39 -0.02 1.72 16 15 C -0.18 -3.19 9.00 71.98 0.65 -2.54 16 16 N -0.67 -19.35 5.11 -495.59 -2.53 -21.88 16 17 C 0.07 2.16 5.97 85.56 0.51 2.67 16 18 C 0.44 20.16 7.82 87.66 0.69 20.85 16 19 O -0.62 -34.02 15.78 -3.08 -0.05 -34.07 16 20 N -0.57 -28.78 5.29 -306.98 -1.62 -30.41 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.00 13.05 21.67 0.28 -48.71 16 25 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 O -0.19 -3.22 10.57 -7.11 -0.08 -3.30 16 30 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.81 6.47 -2.38 -0.02 1.79 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.41 5.68 8.18 -92.71 -0.76 4.92 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.99 7.61 -2.38 -0.02 1.97 16 40 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 41 H 0.08 1.10 7.45 -2.39 -0.02 1.08 16 42 H 0.05 1.04 8.13 -2.38 -0.02 1.02 16 43 H 0.35 10.93 8.17 -89.70 -0.73 10.20 16 44 H 0.11 2.98 8.06 -2.38 -0.02 2.96 16 45 H 0.07 1.88 7.43 -2.39 -0.02 1.87 16 46 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 47 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -74.15 398.09 -1.12 -75.27 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -1.19 Total: 39.48 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.33 Total: 23.33 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -9.10 Total: -129.67 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.19 Total: -53.23 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.15 -1.12 -75.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.380 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds