Wall clock time and date at job start Tue Mar 31 2020 21:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30616 * 125.42467 * 2 1 4 4 C 1.33694 * 108.99186 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.26866 * 179.97438 * 4 3 2 6 6 C 1.36338 * 107.45333 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.63979 * 179.97438 * 6 4 3 8 8 O 1.21685 * 120.00495 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00055 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47044 * 325.00550 * 10 9 7 12 12 C 1.52999 * 109.46732 * 85.00098 * 10 9 7 13 13 C 1.52994 * 109.47400 * 204.99878 * 10 9 7 14 14 H 1.09004 * 109.47254 * 64.99939 * 13 10 9 15 15 C 1.53001 * 109.47488 * 305.00299 * 13 10 9 16 16 N 1.46896 * 109.47691 * 185.00025 * 13 10 9 17 17 C 1.46896 * 111.00477 * 205.00079 * 16 13 10 18 18 C 1.50698 * 109.47153 * 179.97438 * 17 16 13 19 19 O 1.21297 * 120.00285 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00277 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00444 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99883 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00191 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00139 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00125 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47071 * 89.99968 * 25 23 21 27 27 H 1.48502 * 109.46927 * 209.99846 * 25 23 21 28 28 H 1.48496 * 109.46635 * 329.99663 * 25 23 21 29 29 O 1.33664 * 125.41524 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47397 * 90.01940 * 1 2 3 31 31 H 1.09003 * 109.46846 * 210.02529 * 1 2 3 32 32 H 1.08998 * 109.46622 * 330.02146 * 1 2 3 33 33 H 1.09001 * 109.47099 * 90.03010 * 5 4 3 34 34 H 1.09000 * 109.47184 * 210.02427 * 5 4 3 35 35 H 1.08995 * 109.47599 * 330.02948 * 5 4 3 36 36 H 0.96998 * 120.00230 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47411 * 60.00286 * 12 10 9 38 38 H 1.09005 * 109.47253 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47752 * 299.99876 * 12 10 9 40 40 H 1.09002 * 109.46985 * 300.00377 * 15 13 10 41 41 H 1.09007 * 109.47014 * 59.99542 * 15 13 10 42 42 H 1.08998 * 109.47645 * 179.97438 * 15 13 10 43 43 H 1.00904 * 110.99679 * 81.04382 * 16 13 10 44 44 H 1.08998 * 109.47376 * 300.00024 * 17 16 13 45 45 H 1.09001 * 109.46687 * 60.00052 * 17 16 13 46 46 H 0.97003 * 119.99525 * 0.02562 * 20 18 17 47 47 H 0.97003 * 120.00039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2642 1.0644 0.0000 4 6 3.5465 0.6862 0.0006 5 6 4.7453 1.5993 0.0002 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0003 8 8 5.8719 -1.0293 0.0009 9 7 4.6315 -2.8728 -0.0005 10 6 5.8224 -3.7261 0.0000 11 1 6.6084 -3.2531 -0.5885 12 6 6.3090 -3.9216 1.4373 13 6 5.4761 -5.0855 -0.6105 14 1 5.2144 -4.9562 -1.6607 15 6 4.2893 -5.6940 0.1394 16 7 6.6354 -5.9811 -0.5014 17 6 6.5957 -7.0222 -1.5369 18 6 7.7983 -7.9191 -1.3939 19 8 8.6085 -7.7116 -0.5154 20 7 7.9731 -8.9523 -2.2414 21 6 9.0668 -9.7685 -2.1110 22 1 9.7882 -9.5838 -1.3288 23 6 9.2472 -10.8334 -2.9851 24 7 8.3697 -11.0579 -3.9372 25 14 10.7372 -11.9460 -2.8069 26 1 10.4081 -13.0720 -1.8965 27 1 11.1174 -12.4812 -4.1389 28 1 11.8705 -11.1690 -2.2438 29 8 2.2817 -1.0893 0.0005 30 1 -0.3634 -0.0003 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3632 0.8902 0.5135 33 1 5.0344 1.8198 1.0278 34 1 5.5736 1.1114 -0.5135 35 1 4.4951 2.5273 -0.5138 36 1 3.7480 -3.2732 -0.0013 37 1 5.5230 -4.3946 2.0259 38 1 7.1954 -4.5561 1.4377 39 1 6.5558 -2.9531 1.8724 40 1 4.5508 -5.8233 1.1897 41 1 3.4290 -5.0295 0.0584 42 1 4.0423 -6.6623 -0.2958 43 1 6.6916 -6.3891 0.4197 44 1 5.6863 -7.6125 -1.4241 45 1 6.6060 -6.5555 -2.5219 46 1 7.3249 -9.1184 -2.9438 47 1 8.4955 -11.8015 -4.5472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:49 Heat of formation + Delta-G solvation = -53.565222 kcal Electronic energy + Delta-G solvation = -28734.758204 eV Core-core repulsion = 24533.244318 eV Total energy + Delta-G solvation = -4201.513886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.83267 -40.11523 -38.51972 -37.42711 -35.78401 -34.53308 -33.82252 -33.21589 -31.37247 -30.99294 -29.76347 -29.21633 -27.65505 -26.42723 -24.77868 -23.89394 -22.55008 -22.14201 -20.91941 -19.94529 -19.37381 -18.57185 -17.91810 -17.45550 -16.38372 -16.26757 -15.90727 -15.62483 -15.13036 -14.92366 -14.69983 -14.54216 -14.41148 -13.95274 -13.83966 -13.68868 -13.52829 -13.41559 -13.31381 -13.14688 -13.02958 -12.49637 -12.40195 -12.28681 -12.20784 -11.95344 -11.56556 -11.45169 -11.36897 -11.23843 -11.06798 -11.02354 -10.90688 -10.40213 -10.37812 -10.22983 -9.52342 -9.48228 -9.09053 -8.50670 -8.11898 -7.97677 -6.43131 -3.83960 0.43632 1.97585 1.99537 2.78802 2.81068 3.17032 3.25939 3.32129 3.45543 3.88707 4.07749 4.29157 4.32383 4.33899 4.65610 4.72664 4.74713 4.79460 4.91088 5.04116 5.14611 5.15573 5.22547 5.24334 5.29937 5.33753 5.36646 5.52050 5.56121 5.60821 5.62702 5.71168 5.80976 5.89650 5.93886 5.96720 6.02721 6.22801 6.27411 6.34713 7.01078 7.12458 7.26538 7.54081 7.57637 7.77823 8.04712 8.59451 9.16478 9.52513 10.03741 10.74541 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.001790 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.521855 B =15639.851332 C =16092.457872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.220 3.780 3 N -0.490 5.490 4 C 0.084 3.916 5 C -0.082 4.082 6 C -0.121 4.121 7 C 0.610 3.390 8 O -0.509 6.509 9 N -0.713 5.713 10 C 0.153 3.847 11 H 0.101 0.899 12 C -0.164 4.164 13 C 0.078 3.922 14 H 0.084 0.916 15 C -0.190 4.190 16 N -0.657 5.657 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 O -0.190 6.190 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.401 0.599 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.973 19.965 6.749 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.014 3.986 3 N -0.221 5.221 4 C -0.040 4.040 5 C -0.139 4.139 6 C -0.176 4.176 7 C 0.395 3.605 8 O -0.386 6.386 9 N -0.365 5.365 10 C 0.049 3.951 11 H 0.119 0.881 12 C -0.222 4.222 13 C -0.034 4.034 14 H 0.102 0.898 15 C -0.249 4.249 16 N -0.290 5.290 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.077 6.077 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.237 0.763 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.437 21.222 6.826 28.302 hybrid contribution -0.826 -2.239 -0.149 2.391 sum -18.263 18.983 6.676 27.175 Atomic orbital electron populations 1.20401 0.80672 1.05632 1.05238 1.26577 0.96685 0.78623 0.96691 1.70368 1.01671 1.29947 1.20119 1.22100 0.93453 0.91318 0.97165 1.20418 0.92198 0.97474 1.03841 1.22947 0.82319 0.95252 1.17046 1.16271 0.85381 0.81720 0.77138 1.90885 1.23546 1.73789 1.50382 1.46133 1.10963 1.05230 1.74180 1.21004 0.86510 0.89506 0.98081 0.88085 1.22191 1.02257 1.02557 0.95211 1.21713 0.89444 0.92328 0.99875 0.89824 1.22629 0.98850 1.01585 1.01832 1.60011 1.39526 1.21289 1.08204 1.21708 0.97066 0.92937 0.96429 1.19781 0.88558 0.83671 0.85422 1.90530 1.46488 1.73306 1.36327 1.41859 1.23789 1.25287 1.29059 1.19705 1.01533 1.06707 1.14924 0.87886 1.25266 0.98914 0.98181 0.95607 1.69612 1.35839 1.31035 1.17841 0.85851 0.81142 0.79821 0.77445 1.20440 1.20921 1.19378 1.84430 1.16229 1.37363 1.69721 0.88292 0.88847 0.87662 0.89892 0.88442 0.90420 0.76251 0.92771 0.89666 0.92402 0.91522 0.92573 0.91796 0.82577 0.93718 0.89522 0.77478 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.22 1.84 8.32 -12.79 -0.11 1.74 16 3 N -0.49 -5.24 11.26 -7.07 -0.08 -5.32 16 4 C 0.08 0.94 7.16 -82.47 -0.59 0.35 16 5 C -0.08 -0.77 9.87 36.00 0.36 -0.42 16 6 C -0.12 -1.35 7.18 -36.84 -0.26 -1.62 16 7 C 0.61 7.31 7.75 -12.83 -0.10 7.21 16 8 O -0.51 -7.34 14.45 5.20 0.08 -7.26 16 9 N -0.71 -7.22 4.98 -55.11 -0.27 -7.50 16 10 C 0.15 1.76 2.63 -67.93 -0.18 1.58 16 11 H 0.10 1.39 7.57 -51.93 -0.39 1.00 16 12 C -0.16 -1.88 8.86 37.16 0.33 -1.55 16 13 C 0.08 0.88 2.64 -67.72 -0.18 0.70 16 14 H 0.08 0.93 7.80 -51.93 -0.40 0.52 16 15 C -0.19 -1.74 8.68 37.16 0.32 -1.42 16 16 N -0.66 -9.87 5.23 -108.00 -0.56 -10.43 16 17 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 18 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 19 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 20 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 21 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 O -0.19 -1.81 10.57 4.42 0.05 -1.77 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.00 6.47 -51.93 -0.34 0.67 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.30 6.37 -40.82 -0.26 3.04 16 37 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 38 H 0.08 1.09 7.13 -51.93 -0.37 0.72 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16 41 H 0.06 0.41 6.29 -51.93 -0.33 0.08 16 42 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 43 H 0.35 5.47 7.39 -39.29 -0.29 5.18 16 44 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 45 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -33.66 391.36 -6.18 -39.85 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.62 Total: 14.13 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.39 Total: 9.72 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.25 Total: -61.07 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.21 Total: -24.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.66 -6.18 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.719 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds