Wall clock time and date at job start Tue Mar 31 2020 21:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30616 * 125.42467 * 2 1 4 4 C 1.33694 * 108.99186 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.26866 * 179.97438 * 4 3 2 6 6 C 1.36338 * 107.45333 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.63979 * 179.97438 * 6 4 3 8 8 O 1.21685 * 120.00495 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00055 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47044 * 325.00550 * 10 9 7 12 12 C 1.52999 * 109.46732 * 85.00098 * 10 9 7 13 13 C 1.52994 * 109.47400 * 204.99878 * 10 9 7 14 14 H 1.09004 * 109.47254 * 64.99939 * 13 10 9 15 15 C 1.53001 * 109.47488 * 305.00299 * 13 10 9 16 16 N 1.46896 * 109.47691 * 185.00025 * 13 10 9 17 17 C 1.46896 * 111.00477 * 205.00079 * 16 13 10 18 18 C 1.50698 * 109.47153 * 179.97438 * 17 16 13 19 19 O 1.21297 * 120.00285 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00277 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00444 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99883 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00191 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00139 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00125 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47071 * 89.99968 * 25 23 21 27 27 H 1.48502 * 109.46927 * 209.99846 * 25 23 21 28 28 H 1.48496 * 109.46635 * 329.99663 * 25 23 21 29 29 O 1.33664 * 125.41524 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47397 * 90.01940 * 1 2 3 31 31 H 1.09003 * 109.46846 * 210.02529 * 1 2 3 32 32 H 1.08998 * 109.46622 * 330.02146 * 1 2 3 33 33 H 1.09001 * 109.47099 * 90.03010 * 5 4 3 34 34 H 1.09000 * 109.47184 * 210.02427 * 5 4 3 35 35 H 1.08995 * 109.47599 * 330.02948 * 5 4 3 36 36 H 0.96998 * 120.00230 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47411 * 60.00286 * 12 10 9 38 38 H 1.09005 * 109.47253 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47752 * 299.99876 * 12 10 9 40 40 H 1.09002 * 109.46985 * 300.00377 * 15 13 10 41 41 H 1.09007 * 109.47014 * 59.99542 * 15 13 10 42 42 H 1.08998 * 109.47645 * 179.97438 * 15 13 10 43 43 H 1.00904 * 110.99679 * 81.04382 * 16 13 10 44 44 H 1.08998 * 109.47376 * 300.00024 * 17 16 13 45 45 H 1.09001 * 109.46687 * 60.00052 * 17 16 13 46 46 H 0.97003 * 119.99525 * 0.02562 * 20 18 17 47 47 H 0.97003 * 120.00039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2642 1.0644 0.0000 4 6 3.5465 0.6862 0.0006 5 6 4.7453 1.5993 0.0002 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0003 8 8 5.8719 -1.0293 0.0009 9 7 4.6315 -2.8728 -0.0005 10 6 5.8224 -3.7261 0.0000 11 1 6.6084 -3.2531 -0.5885 12 6 6.3090 -3.9216 1.4373 13 6 5.4761 -5.0855 -0.6105 14 1 5.2144 -4.9562 -1.6607 15 6 4.2893 -5.6940 0.1394 16 7 6.6354 -5.9811 -0.5014 17 6 6.5957 -7.0222 -1.5369 18 6 7.7983 -7.9191 -1.3939 19 8 8.6085 -7.7116 -0.5154 20 7 7.9731 -8.9523 -2.2414 21 6 9.0668 -9.7685 -2.1110 22 1 9.7882 -9.5838 -1.3288 23 6 9.2472 -10.8334 -2.9851 24 7 8.3697 -11.0579 -3.9372 25 14 10.7372 -11.9460 -2.8069 26 1 10.4081 -13.0720 -1.8965 27 1 11.1174 -12.4812 -4.1389 28 1 11.8705 -11.1690 -2.2438 29 8 2.2817 -1.0893 0.0005 30 1 -0.3634 -0.0003 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3632 0.8902 0.5135 33 1 5.0344 1.8198 1.0278 34 1 5.5736 1.1114 -0.5135 35 1 4.4951 2.5273 -0.5138 36 1 3.7480 -3.2732 -0.0013 37 1 5.5230 -4.3946 2.0259 38 1 7.1954 -4.5561 1.4377 39 1 6.5558 -2.9531 1.8724 40 1 4.5508 -5.8233 1.1897 41 1 3.4290 -5.0295 0.0584 42 1 4.0423 -6.6623 -0.2958 43 1 6.6916 -6.3891 0.4197 44 1 5.6863 -7.6125 -1.4241 45 1 6.6060 -6.5555 -2.5219 46 1 7.3249 -9.1184 -2.9438 47 1 8.4955 -11.8015 -4.5472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:47 Heat of formation + Delta-G solvation = -81.744616 kcal Electronic energy + Delta-G solvation = -28735.980154 eV Core-core repulsion = 24533.244318 eV Total energy + Delta-G solvation = -4202.735836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -44.55553 -41.06912 -40.16990 -38.64591 -36.56609 -36.03713 -35.38166 -33.84443 -33.27352 -32.15733 -30.32143 -30.14343 -28.45425 -27.93998 -26.05993 -25.25953 -23.34047 -22.87843 -21.74501 -21.16011 -20.86740 -19.94012 -19.45394 -18.18470 -17.76456 -17.25585 -17.05014 -16.75419 -16.41382 -16.15186 -16.01462 -15.64018 -15.42816 -15.34100 -15.08124 -14.70575 -14.34572 -14.20837 -14.04485 -13.96125 -13.80717 -13.50623 -13.49252 -13.35092 -13.23651 -13.11932 -13.08557 -12.88203 -12.59552 -12.41190 -12.12614 -12.08904 -12.02214 -11.92906 -11.86238 -11.50016 -11.30316 -10.43451 -10.31206 -10.00771 -9.85771 -9.33044 -8.46394 -5.94809 -0.33623 1.24448 1.26276 1.38122 1.42123 1.54708 1.90099 1.95897 2.06290 2.30031 2.85678 2.97373 3.21150 3.53005 3.57487 3.59201 3.76106 3.86466 4.18685 4.25668 4.28162 4.30932 4.41740 4.46105 4.51881 4.59878 4.61901 4.62013 4.64549 4.68521 4.74385 4.81892 4.86030 4.93562 4.96221 5.09858 5.17742 5.27470 5.35413 5.40201 5.41751 5.87636 6.08451 6.21742 6.39331 6.50729 6.60743 6.91081 7.13379 7.57204 8.12593 8.70899 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.001790 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.521855 B =15639.851332 C =16092.457872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.233 3.767 3 N -0.519 5.519 4 C 0.075 3.925 5 C -0.080 4.080 6 C -0.141 4.141 7 C 0.610 3.390 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.160 3.840 11 H 0.074 0.926 12 C -0.157 4.157 13 C 0.084 3.916 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.673 5.673 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.274 1.274 29 O -0.189 6.189 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.350 0.650 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.530 19.871 6.624 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.028 3.972 3 N -0.249 5.249 4 C -0.049 4.049 5 C -0.137 4.137 6 C -0.195 4.195 7 C 0.396 3.604 8 O -0.421 6.421 9 N -0.351 5.351 10 C 0.055 3.945 11 H 0.093 0.907 12 C -0.215 4.215 13 C -0.027 4.027 14 H 0.109 0.891 15 C -0.243 4.243 16 N -0.306 5.306 17 C -0.065 4.065 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.199 1.199 29 O -0.077 6.077 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.170 0.830 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.050 21.127 6.687 29.884 hybrid contribution -0.138 -2.111 -0.088 2.118 sum -20.187 19.016 6.599 28.507 Atomic orbital electron populations 1.20771 0.76967 1.07301 1.06917 1.27714 0.98270 0.77771 0.93471 1.70412 1.01580 1.31039 1.21900 1.22404 0.94218 0.91710 0.96592 1.20410 0.91464 0.97631 1.04204 1.22673 0.82768 0.95065 1.19044 1.16386 0.85318 0.82114 0.76622 1.90866 1.24872 1.74416 1.51944 1.45928 1.11079 1.04559 1.73515 1.20785 0.86412 0.89637 0.97637 0.90746 1.22106 1.02213 1.01768 0.95453 1.21691 0.89019 0.91203 1.00740 0.89096 1.22568 0.98404 1.01937 1.01439 1.59941 1.42130 1.21046 1.07532 1.21546 0.94649 0.92566 0.97750 1.20900 0.89610 0.83236 0.83764 1.90501 1.48478 1.74186 1.37735 1.41926 1.23488 1.25852 1.29808 1.19657 1.02649 1.08519 1.15443 0.90354 1.26022 1.01443 0.98886 0.94948 1.69668 1.36891 1.31498 1.18033 0.84939 0.77621 0.77934 0.77920 1.19548 1.19608 1.19932 1.84430 1.15572 1.37695 1.69985 0.86337 0.86617 0.86475 0.89277 0.89699 0.89222 0.74822 0.90915 0.91245 0.93438 0.91376 0.90160 0.91677 0.82981 0.90948 0.87930 0.76948 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.23 3.42 8.32 88.29 0.73 4.15 16 3 N -0.52 -10.49 11.26 -291.06 -3.28 -13.77 16 4 C 0.07 1.65 7.16 41.83 0.30 1.95 16 5 C -0.08 -1.53 9.87 71.24 0.70 -0.83 16 6 C -0.14 -3.07 7.18 24.05 0.17 -2.90 16 7 C 0.61 14.58 7.75 86.46 0.67 15.25 16 8 O -0.54 -16.16 14.45 -4.30 -0.06 -16.22 16 9 N -0.70 -13.41 4.98 -446.48 -2.23 -15.64 16 10 C 0.16 3.60 2.63 44.99 0.12 3.72 16 11 H 0.07 2.11 7.57 -2.39 -0.02 2.09 16 12 C -0.16 -3.57 8.86 71.98 0.64 -2.94 16 13 C 0.08 1.75 2.64 44.91 0.12 1.87 16 14 H 0.09 1.81 7.80 -2.38 -0.02 1.79 16 15 C -0.18 -2.85 8.68 71.98 0.62 -2.23 16 16 N -0.67 -19.68 5.23 -495.60 -2.59 -22.28 16 17 C 0.07 2.17 5.96 85.56 0.51 2.68 16 18 C 0.44 20.37 7.82 87.66 0.69 21.06 16 19 O -0.62 -34.07 15.78 -3.08 -0.05 -34.12 16 20 N -0.57 -29.04 5.29 -306.99 -1.62 -30.66 16 21 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 25 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 29 O -0.19 -3.27 10.57 -7.11 -0.08 -3.34 16 30 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.84 6.47 -2.39 -0.02 1.83 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.41 5.87 6.37 -92.71 -0.59 5.28 16 37 H 0.07 1.36 6.56 -2.39 -0.02 1.34 16 38 H 0.07 1.81 7.13 -2.38 -0.02 1.79 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.06 6.55 -2.39 -0.02 1.05 16 41 H 0.08 0.86 6.29 -2.38 -0.01 0.85 16 42 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 43 H 0.35 10.67 7.39 -89.69 -0.66 10.01 16 44 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 45 H 0.10 3.02 8.06 -2.39 -0.02 3.01 16 46 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 47 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -74.89 391.36 -1.23 -76.12 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.94 Total: 39.96 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 7.30 Total: 24.06 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -9.43 Total: -131.39 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.19 Total: -53.68 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.89 -1.23 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.626 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds