Wall clock time and date at job start Tue Mar 31 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30616 * 125.42310 * 2 1 4 4 C 1.33690 * 108.99234 * 179.74965 * 3 2 1 5 5 C 1.50705 * 126.27149 * 180.27154 * 4 3 2 6 6 C 1.36339 * 107.45637 * 0.42984 * 4 3 2 7 7 C 1.46722 * 126.64589 * 179.83916 * 6 4 3 8 8 O 1.21685 * 119.99643 * 359.71733 * 7 6 4 9 9 N 1.34778 * 119.99988 * 179.70770 * 7 6 4 10 10 C 1.46504 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46475 * 35.00453 * 10 9 7 12 12 C 1.53002 * 109.47059 * 275.00655 * 10 9 7 13 13 C 1.52992 * 109.46891 * 155.00644 * 10 9 7 14 14 H 1.09002 * 109.47103 * 294.99921 * 13 10 9 15 15 C 1.52997 * 109.47482 * 55.00168 * 13 10 9 16 16 N 1.46902 * 109.47181 * 175.00390 * 13 10 9 17 17 C 1.46895 * 111.00561 * 154.99678 * 16 13 10 18 18 C 1.50699 * 109.47505 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99607 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99820 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00168 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99647 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99567 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00375 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47206 * 89.99625 * 25 23 21 27 27 H 1.48500 * 109.47157 * 210.00190 * 25 23 21 28 28 H 1.48507 * 109.47022 * 330.00203 * 25 23 21 29 29 O 1.33669 * 125.42002 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47487 * 269.97442 * 1 2 3 31 31 H 1.09003 * 109.47308 * 29.98094 * 1 2 3 32 32 H 1.09004 * 109.47221 * 149.97617 * 1 2 3 33 33 H 1.09003 * 109.46839 * 270.18735 * 5 4 3 34 34 H 1.08997 * 109.47256 * 30.18244 * 5 4 3 35 35 H 1.08996 * 109.46978 * 150.18730 * 5 4 3 36 36 H 0.97003 * 119.99850 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.47334 * 59.99995 * 12 10 9 38 38 H 1.09000 * 109.46593 * 180.02562 * 12 10 9 39 39 H 1.08998 * 109.46891 * 300.00020 * 12 10 9 40 40 H 1.09002 * 109.47153 * 59.99783 * 15 13 10 41 41 H 1.09001 * 109.46832 * 299.99974 * 15 13 10 42 42 H 1.09004 * 109.47261 * 179.97438 * 15 13 10 43 43 H 1.00906 * 110.99706 * 278.95562 * 16 13 10 44 44 H 1.09004 * 109.46925 * 300.00216 * 17 16 13 45 45 H 1.09001 * 109.46797 * 59.99650 * 17 16 13 46 46 H 0.97001 * 120.00239 * 359.97438 * 20 18 17 47 47 H 0.96999 * 119.99901 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6862 0.0055 5 6 4.7452 1.5995 0.0132 6 6 3.5708 -0.6769 -0.0007 7 6 4.7635 -1.5314 -0.0012 8 8 5.8718 -1.0290 -0.0009 9 7 4.6316 -2.8727 -0.0018 10 6 5.8225 -3.7259 -0.0029 11 1 6.6084 -3.2534 0.5865 12 6 6.3096 -3.9199 -1.4403 13 6 5.4760 -5.0860 0.6061 14 1 5.2141 -4.9577 1.6563 15 6 4.2895 -5.6937 -0.1449 16 7 6.6354 -5.9814 0.4964 17 6 6.5955 -7.0236 1.5308 18 6 7.7982 -7.9202 1.3873 19 8 8.6086 -7.7118 0.5092 20 7 7.9727 -8.9543 2.2339 21 6 9.0666 -9.7703 2.1029 22 1 9.7882 -9.5847 1.3211 23 6 9.2468 -10.8361 2.9761 24 7 10.2951 -11.6185 2.8502 25 14 7.9991 -11.1566 4.3287 26 1 6.9448 -12.0719 3.8229 27 1 8.6794 -11.7801 5.4922 28 1 7.3810 -9.8725 4.7465 29 8 2.2817 -1.0893 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 5.0372 1.8243 -1.0126 34 1 4.4934 2.5252 0.5305 35 1 5.5720 1.1093 0.5272 36 1 3.7480 -3.2731 -0.0023 37 1 6.5565 -2.9509 -1.8742 38 1 7.1954 -4.5551 -1.4410 39 1 5.5237 -4.3922 -2.0296 40 1 4.5514 -5.8220 -1.1952 41 1 3.4292 -5.0293 -0.0634 42 1 4.0429 -6.6629 0.2887 43 1 6.6920 -6.3885 -0.4251 44 1 6.6055 -6.5579 2.5163 45 1 5.6862 -7.6137 1.4171 46 1 7.3244 -9.1212 2.9358 47 1 10.4211 -12.3623 3.4600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:52 Heat of formation + Delta-G solvation = -76.960513 kcal Electronic energy + Delta-G solvation = -28800.776905 eV Core-core repulsion = 24598.248524 eV Total energy + Delta-G solvation = -4202.528382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.55420 -41.07322 -40.29885 -38.66889 -36.56783 -36.06873 -35.40456 -33.85015 -33.73575 -32.19995 -30.32377 -30.15727 -28.47397 -28.03901 -25.94882 -25.16823 -23.33075 -22.87704 -21.74371 -21.31347 -20.87673 -20.33946 -19.44068 -18.18338 -17.72849 -17.29365 -17.10279 -16.78440 -16.54274 -16.16560 -16.01714 -15.44877 -15.36980 -15.28580 -15.01492 -14.76051 -14.47022 -14.34896 -14.11885 -14.00145 -13.90706 -13.81967 -13.49361 -13.38595 -13.23862 -13.12210 -13.09473 -12.90596 -12.59661 -12.40797 -12.08561 -12.02523 -11.98819 -11.91506 -11.85329 -11.50121 -11.30363 -10.47567 -10.35718 -10.24058 -9.85667 -9.33085 -8.40483 -6.01441 -0.33579 1.24199 1.26488 1.30843 1.36126 1.45348 1.90287 1.95793 1.97137 2.23816 2.76235 2.87616 3.16111 3.42575 3.57731 3.59342 3.76464 3.86272 4.14823 4.19466 4.26015 4.29521 4.41757 4.43035 4.50195 4.59325 4.60133 4.61888 4.64427 4.68641 4.74483 4.82320 4.85938 4.94178 4.96539 5.09970 5.18741 5.27384 5.35600 5.40668 5.53541 5.90350 6.02888 6.21930 6.37468 6.50938 6.60471 6.89169 6.91563 7.40835 7.97748 8.77175 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.001898 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.291208 B =14745.363619 C =15267.498828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.233 3.767 3 N -0.519 5.519 4 C 0.074 3.926 5 C -0.080 4.080 6 C -0.140 4.140 7 C 0.609 3.391 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.159 3.841 11 H 0.074 0.926 12 C -0.158 4.158 13 C 0.085 3.915 14 H 0.096 0.904 15 C -0.186 4.186 16 N -0.678 5.678 17 C 0.064 3.936 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.231 1.231 29 O -0.189 6.189 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.350 0.650 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.508 22.043 -2.814 36.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 N -0.250 5.250 4 C -0.050 4.050 5 C -0.137 4.137 6 C -0.195 4.195 7 C 0.395 3.605 8 O -0.421 6.421 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.216 4.216 13 C -0.025 4.025 14 H 0.114 0.886 15 C -0.244 4.244 16 N -0.311 5.311 17 C -0.068 4.068 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.154 1.154 29 O -0.076 6.076 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.252 0.748 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.170 0.830 44 H 0.131 0.869 45 H 0.101 0.899 46 H 0.226 0.774 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.889 23.281 -2.982 35.692 hybrid contribution -0.435 -1.997 0.245 2.059 sum -27.324 21.283 -2.736 34.743 Atomic orbital electron populations 1.20768 0.76972 1.07287 1.06920 1.27708 0.98258 0.77773 0.93476 1.70410 1.01590 1.31066 1.21886 1.22401 0.94202 0.91747 0.96636 1.20409 0.91492 0.97646 1.04169 1.22672 0.82780 0.95042 1.18999 1.16387 0.85284 0.82158 0.76626 1.90871 1.24914 1.74426 1.51927 1.45919 1.11094 1.04508 1.73515 1.20802 0.86417 0.89823 0.97527 0.90735 1.22112 1.02197 1.01688 0.95638 1.21693 0.88896 0.90982 1.00970 0.88591 1.22579 0.98360 1.02103 1.01403 1.59928 1.42337 1.21176 1.07683 1.21653 0.94336 0.92592 0.98260 1.21016 0.89548 0.82668 0.83197 1.90555 1.48358 1.73520 1.37375 1.42023 1.23218 1.27231 1.30807 1.19005 1.02066 1.08547 1.16135 0.92747 1.26147 0.99537 0.94950 1.00934 1.69813 1.30039 1.18017 1.39712 0.85347 0.78219 0.80480 0.77354 1.17990 1.20241 1.15378 1.84428 1.15549 1.37666 1.69992 0.86312 0.86524 0.86615 0.89351 0.89238 0.89688 0.74774 0.93589 0.91330 0.90922 0.91597 0.90188 0.91262 0.82962 0.86935 0.89851 0.77444 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 71.24 0.75 0.60 16 2 C 0.23 3.23 8.32 88.29 0.73 3.97 16 3 N -0.52 -10.14 11.26 -291.05 -3.28 -13.42 16 4 C 0.07 1.59 7.16 41.83 0.30 1.89 16 5 C -0.08 -1.49 9.87 71.24 0.70 -0.79 16 6 C -0.14 -2.93 7.18 24.05 0.17 -2.76 16 7 C 0.61 13.96 7.75 86.46 0.67 14.63 16 8 O -0.54 -15.75 14.46 -4.30 -0.06 -15.81 16 9 N -0.70 -12.45 4.98 -446.46 -2.23 -14.68 16 10 C 0.16 3.34 2.63 44.99 0.12 3.46 16 11 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16 12 C -0.16 -3.47 8.87 71.98 0.64 -2.83 16 13 C 0.08 1.57 2.64 44.91 0.12 1.68 16 14 H 0.10 1.59 7.80 -2.39 -0.02 1.57 16 15 C -0.19 -2.42 8.68 71.98 0.62 -1.80 16 16 N -0.68 -18.19 5.23 -495.60 -2.59 -20.78 16 17 C 0.06 1.79 5.96 85.56 0.51 2.30 16 18 C 0.45 19.63 7.82 87.66 0.69 20.32 16 19 O -0.61 -33.51 15.78 -3.08 -0.05 -33.56 16 20 N -0.59 -27.30 5.09 -306.98 -1.56 -28.86 16 21 C -0.33 -19.13 10.16 84.04 0.85 -18.27 16 22 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 23 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 24 N -0.94 -56.35 13.96 21.67 0.30 -56.05 16 25 Si 0.97 38.25 27.74 68.60 1.90 40.15 16 26 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 29 O -0.19 -3.07 10.57 -7.15 -0.08 -3.15 16 30 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.79 6.47 -2.39 -0.02 1.78 16 36 H 0.41 5.24 6.37 -92.71 -0.59 4.65 16 37 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.75 7.13 -2.39 -0.02 1.73 16 39 H 0.07 1.30 6.56 -2.39 -0.02 1.28 16 40 H 0.07 0.91 6.55 -2.39 -0.02 0.90 16 41 H 0.08 0.69 6.29 -2.39 -0.02 0.67 16 42 H 0.07 0.88 7.45 -2.38 -0.02 0.86 16 43 H 0.35 10.02 7.39 -89.69 -0.66 9.36 16 44 H 0.11 2.70 8.06 -2.39 -0.02 2.68 16 45 H 0.08 1.80 7.44 -2.39 -0.02 1.78 16 46 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 47 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -83.69 388.24 -1.10 -84.78 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.80 Total: 39.44 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 7.35 Total: 21.92 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -9.35 Total: -133.79 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.19 Total: -52.51 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.15 kcal Total: -83.69 -1.10 -84.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.823 kcal (2) G-P(sol) polarization free energy of solvation -83.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds