Wall clock time and date at job start Tue Mar 31 2020 20:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.77756 * 2 1 4 4 C 1.54322 * 110.71934 * 236.75856 * 2 1 3 5 5 N 1.47025 * 107.27051 * 263.82696 * 4 2 1 6 6 C 1.36941 * 125.64605 * 181.09618 * 5 4 2 7 7 H 1.07997 * 120.00204 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99723 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99763 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46965 * 59.99996 * 10 8 6 12 12 H 1.48502 * 109.47115 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47078 * 300.00054 * 10 8 6 14 14 C 1.47420 * 108.70571 * 1.06409 * 5 4 2 15 15 C 1.54915 * 104.83131 * 335.86992 * 14 5 4 16 16 H 1.08993 * 111.00344 * 155.12622 * 15 14 5 17 17 N 1.46503 * 111.00299 * 278.93525 * 15 14 5 18 18 C 1.34769 * 120.00158 * 273.54819 * 17 15 14 19 19 O 1.21287 * 120.00329 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00254 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46986 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.46822 * 179.97438 * 21 20 18 23 23 H 1.08994 * 110.65716 * 302.08879 * 22 21 20 24 24 N 1.47317 * 110.59660 * 65.00073 * 22 21 20 25 25 C 1.34527 * 106.61579 * 118.75423 * 24 22 21 26 26 O 1.21542 * 123.76861 * 179.76750 * 25 24 22 27 27 N 1.33785 * 112.46096 * 359.60545 * 25 24 22 28 28 C 1.34771 * 111.64603 * 0.41435 * 27 25 24 29 29 O 1.21225 * 127.16082 * 179.72976 * 28 27 25 30 30 H 1.08994 * 109.47329 * 296.76083 * 1 2 3 31 31 H 1.08999 * 109.47314 * 56.76384 * 1 2 3 32 32 H 1.09008 * 109.47064 * 176.76576 * 1 2 3 33 33 H 1.09000 * 109.46993 * 183.23717 * 3 2 1 34 34 H 1.09002 * 109.47384 * 303.23329 * 3 2 1 35 35 H 1.09006 * 109.47376 * 63.24020 * 3 2 1 36 36 H 1.09001 * 109.87712 * 144.41631 * 4 2 1 37 37 H 1.08994 * 109.88378 * 23.25100 * 4 2 1 38 38 H 0.96996 * 120.00290 * 179.97438 * 9 8 6 39 39 H 1.09003 * 110.36616 * 217.03459 * 14 5 4 40 40 H 1.08994 * 110.36827 * 94.70739 * 14 5 4 41 41 H 0.96999 * 120.00025 * 93.53956 * 17 15 14 42 42 H 1.08998 * 109.47058 * 59.99392 * 20 18 17 43 43 H 1.08996 * 109.46962 * 299.99791 * 20 18 17 44 44 H 1.08997 * 109.47544 * 60.00456 * 21 20 18 45 45 H 1.08996 * 109.47266 * 299.99809 * 21 20 18 46 46 H 0.97001 * 126.68790 * 298.48341 * 24 22 21 47 47 H 0.97002 * 124.18257 * 180.13665 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3716 -2.1532 -0.7389 6 6 2.8946 -3.1634 -1.5013 7 1 3.1251 -2.9905 -2.5421 8 6 3.1283 -4.4096 -0.9363 9 7 2.8478 -4.6201 0.3323 10 14 3.8410 -5.7878 -1.9765 11 1 5.1682 -5.3768 -2.5006 12 1 3.9943 -7.0079 -1.1439 13 1 2.9275 -6.0742 -3.1118 14 6 2.0126 -2.2509 0.6876 15 6 2.0789 -0.7954 1.2139 16 1 1.4401 -0.6664 2.0875 17 7 3.4594 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3220 -1.2522 3.5617 20 6 5.4087 -0.2850 3.0324 21 6 5.7584 -0.7106 4.4598 22 6 7.2002 -0.3062 4.7738 23 1 7.8900 -0.7568 4.0603 24 7 7.3388 1.1604 4.7734 25 6 7.7306 1.5101 6.0119 26 8 7.9427 2.6567 6.3549 27 7 7.8574 0.4552 6.8249 28 6 7.5674 -0.6984 6.1913 29 8 7.5952 -1.8170 6.6576 30 1 -0.3634 0.4627 0.9175 31 1 -0.3634 0.5632 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1609 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8596 35 1 1.7690 1.9344 0.9176 36 1 2.9868 -0.3207 -1.5774 37 1 1.3263 -0.8255 -1.9977 38 1 3.0108 -5.4910 0.7270 39 1 2.7294 -2.8787 1.2170 40 1 1.0040 -2.6488 0.7985 41 1 3.9926 0.0466 0.8439 42 1 5.5105 0.7964 2.9408 43 1 6.0846 -0.7742 2.3311 44 1 5.6565 -1.7919 4.5518 45 1 5.0824 -0.2211 5.1609 46 1 7.1823 1.7571 4.0248 47 1 8.1286 0.5130 7.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717587832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:56 Heat of formation + Delta-G solvation = -61.329441 kcal Electronic energy + Delta-G solvation = -30173.609088 eV Core-core repulsion = 25971.758521 eV Total energy + Delta-G solvation = -4201.850568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65245 -39.78642 -38.91036 -38.07484 -36.67738 -34.82325 -33.86065 -33.05131 -32.35468 -30.73465 -28.72453 -27.73087 -26.70294 -25.63995 -24.10589 -23.25000 -22.74853 -21.62259 -20.50690 -19.72834 -18.69433 -18.65091 -17.30906 -17.03209 -16.83468 -16.67751 -16.03556 -15.88051 -15.83959 -15.36685 -14.62690 -14.56026 -14.38655 -14.04119 -13.84121 -13.68778 -13.30903 -13.15623 -12.80097 -12.62390 -12.17096 -12.15125 -11.94474 -11.77268 -11.37497 -11.33689 -11.20373 -11.19832 -11.02112 -10.79231 -10.71042 -10.56448 -10.44561 -10.26072 -9.98173 -9.86490 -9.83907 -9.71623 -9.43487 -8.70281 -8.38441 -6.83938 -5.65055 -3.08635 1.27665 2.09236 2.67720 2.78938 3.03949 3.37681 3.42619 3.44745 3.50747 3.69171 4.37719 4.46380 4.51843 4.76572 4.93162 5.01985 5.05117 5.17711 5.21280 5.25151 5.44643 5.49441 5.59472 5.68018 5.74286 5.77104 5.83372 5.96868 5.98816 6.06599 6.14338 6.21506 6.37515 6.38363 6.45573 6.56188 6.57513 6.66842 6.72510 6.96004 7.05652 7.46856 7.59617 7.79594 7.85127 7.99328 8.37068 8.67092 9.19856 9.81301 10.45363 11.37134 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003066 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.653587 B = 9129.851601 C =10774.553787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.075 0.925 8 C -0.008 4.008 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.084 0.916 17 N -0.702 5.702 18 C 0.513 3.487 19 O -0.542 6.542 20 C -0.139 4.139 21 C -0.102 4.102 22 C 0.091 3.909 23 H 0.134 0.866 24 N -0.720 5.720 25 C 0.705 3.295 26 O -0.549 6.549 27 N -0.681 5.681 28 C 0.529 3.471 29 O -0.459 6.459 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.019 0.981 41 H 0.395 0.605 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.441 0.559 47 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 13.878 6.238 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.102 0.898 17 N -0.352 5.352 18 C 0.298 3.702 19 O -0.419 6.419 20 C -0.179 4.179 21 C -0.141 4.141 22 C -0.017 4.017 23 H 0.151 0.849 24 N -0.386 5.386 25 C 0.404 3.596 26 O -0.423 6.423 27 N -0.353 5.353 28 C 0.315 3.685 29 O -0.327 6.327 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.037 0.963 41 H 0.230 0.770 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.286 0.714 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 6.627 13.182 7.216 16.424 hybrid contribution 0.631 -0.302 -0.964 1.191 sum 7.257 12.880 6.252 16.052 Atomic orbital electron populations 1.21690 0.93592 1.02512 1.00859 1.21833 0.96005 0.94515 0.96469 1.21715 1.00302 0.95485 1.01299 1.21404 0.96387 0.86862 0.93634 1.44451 1.74207 1.06639 1.07371 1.18972 1.34387 0.89338 0.92849 0.90688 1.24783 1.01676 0.97577 0.96329 1.69786 1.53441 1.22416 1.10757 0.86208 0.78848 0.81695 0.79015 1.21259 1.21577 1.21286 1.22306 1.00076 0.90517 0.85030 1.22498 0.81344 0.98201 0.96049 0.89839 1.45800 1.14967 1.59927 1.14510 1.20247 0.88476 0.79193 0.82280 1.90718 1.62313 1.41543 1.47336 1.21599 0.95881 1.02644 0.97779 1.21532 0.91032 1.04657 0.96884 1.22261 1.01521 0.81701 0.96260 0.84863 1.45614 1.72328 1.08147 1.12482 1.15848 0.77834 0.84181 0.81713 1.91062 1.55776 1.17825 1.77592 1.44336 1.65766 1.08726 1.16437 1.20787 0.75117 0.84135 0.88507 1.90882 1.48235 1.20869 1.72700 0.93093 0.92718 0.91745 0.92946 0.92734 0.92845 0.96127 0.95937 0.93601 0.86847 0.96345 0.77016 0.89392 0.88187 0.87868 0.89843 0.71389 0.72570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.41 37.16 0.31 -1.55 16 2 C -0.09 -1.35 0.81 -152.68 -0.12 -1.47 16 3 C -0.13 -1.55 8.07 37.15 0.30 -1.25 16 4 C 0.14 2.72 6.41 -3.06 -0.02 2.70 16 5 N -0.60 -14.40 3.39 -170.07 -0.58 -14.98 16 6 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 7 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 10 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.15 3.45 5.27 -2.53 -0.01 3.44 16 15 C 0.12 2.24 2.56 -65.78 -0.17 2.07 16 16 H 0.08 1.56 7.63 -51.93 -0.40 1.16 16 17 N -0.70 -10.80 4.69 -51.72 -0.24 -11.04 16 18 C 0.51 7.86 7.83 -10.99 -0.09 7.78 16 19 O -0.54 -10.64 15.73 5.55 0.09 -10.56 16 20 C -0.14 -1.32 5.60 -27.88 -0.16 -1.48 16 21 C -0.10 -0.98 4.28 -26.73 -0.11 -1.10 16 22 C 0.09 0.65 3.70 -68.20 -0.25 0.40 16 23 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 24 N -0.72 -4.71 5.94 -59.19 -0.35 -5.06 16 25 C 0.71 6.44 8.99 -88.02 -0.79 5.65 16 26 O -0.55 -6.97 18.04 5.33 0.10 -6.87 16 27 N -0.68 -5.33 5.70 -15.79 -0.09 -5.42 16 28 C 0.53 4.83 8.14 -10.55 -0.09 4.74 16 29 O -0.46 -5.73 18.02 5.60 0.10 -5.63 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.07 7.57 -51.92 -0.39 0.68 16 33 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.11 3.12 5.87 -51.93 -0.30 2.82 16 40 H 0.02 0.48 7.80 -51.93 -0.41 0.08 16 41 H 0.40 5.22 6.89 -40.82 -0.28 4.94 16 42 H 0.09 0.56 7.36 -51.93 -0.38 0.18 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 45 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 46 H 0.44 2.02 8.37 -40.82 -0.34 1.68 16 47 H 0.43 2.60 8.96 -40.82 -0.37 2.24 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -35.52 381.91 -8.07 -43.59 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.93 Total: 6.03 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -1.45 Total: 13.41 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.70 Total: -62.34 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.28 Total: -23.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.52 -8.07 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717587832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.742 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds