Wall clock time and date at job start Tue Mar 31 2020 20:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.77756 * 2 1 4 4 C 1.54322 * 110.71934 * 236.75856 * 2 1 3 5 5 N 1.47025 * 107.27051 * 263.82696 * 4 2 1 6 6 C 1.36941 * 125.64605 * 181.09618 * 5 4 2 7 7 H 1.07997 * 120.00204 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99723 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99763 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46965 * 59.99996 * 10 8 6 12 12 H 1.48502 * 109.47115 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47078 * 300.00054 * 10 8 6 14 14 C 1.47420 * 108.70571 * 1.06409 * 5 4 2 15 15 C 1.54915 * 104.83131 * 335.86992 * 14 5 4 16 16 H 1.08993 * 111.00344 * 155.12622 * 15 14 5 17 17 N 1.46503 * 111.00299 * 278.93525 * 15 14 5 18 18 C 1.34769 * 120.00158 * 273.54819 * 17 15 14 19 19 O 1.21287 * 120.00329 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00254 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46986 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.46822 * 179.97438 * 21 20 18 23 23 H 1.08994 * 110.65716 * 302.08879 * 22 21 20 24 24 N 1.47317 * 110.59660 * 65.00073 * 22 21 20 25 25 C 1.34527 * 106.61579 * 118.75423 * 24 22 21 26 26 O 1.21542 * 123.76861 * 179.76750 * 25 24 22 27 27 N 1.33785 * 112.46096 * 359.60545 * 25 24 22 28 28 C 1.34771 * 111.64603 * 0.41435 * 27 25 24 29 29 O 1.21225 * 127.16082 * 179.72976 * 28 27 25 30 30 H 1.08994 * 109.47329 * 296.76083 * 1 2 3 31 31 H 1.08999 * 109.47314 * 56.76384 * 1 2 3 32 32 H 1.09008 * 109.47064 * 176.76576 * 1 2 3 33 33 H 1.09000 * 109.46993 * 183.23717 * 3 2 1 34 34 H 1.09002 * 109.47384 * 303.23329 * 3 2 1 35 35 H 1.09006 * 109.47376 * 63.24020 * 3 2 1 36 36 H 1.09001 * 109.87712 * 144.41631 * 4 2 1 37 37 H 1.08994 * 109.88378 * 23.25100 * 4 2 1 38 38 H 0.96996 * 120.00290 * 179.97438 * 9 8 6 39 39 H 1.09003 * 110.36616 * 217.03459 * 14 5 4 40 40 H 1.08994 * 110.36827 * 94.70739 * 14 5 4 41 41 H 0.96999 * 120.00025 * 93.53956 * 17 15 14 42 42 H 1.08998 * 109.47058 * 59.99392 * 20 18 17 43 43 H 1.08996 * 109.46962 * 299.99791 * 20 18 17 44 44 H 1.08997 * 109.47544 * 60.00456 * 21 20 18 45 45 H 1.08996 * 109.47266 * 299.99809 * 21 20 18 46 46 H 0.97001 * 126.68790 * 298.48341 * 24 22 21 47 47 H 0.97002 * 124.18257 * 180.13665 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3716 -2.1532 -0.7389 6 6 2.8946 -3.1634 -1.5013 7 1 3.1251 -2.9905 -2.5421 8 6 3.1283 -4.4096 -0.9363 9 7 2.8478 -4.6201 0.3323 10 14 3.8410 -5.7878 -1.9765 11 1 5.1682 -5.3768 -2.5006 12 1 3.9943 -7.0079 -1.1439 13 1 2.9275 -6.0742 -3.1118 14 6 2.0126 -2.2509 0.6876 15 6 2.0789 -0.7954 1.2139 16 1 1.4401 -0.6664 2.0875 17 7 3.4594 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3220 -1.2522 3.5617 20 6 5.4087 -0.2850 3.0324 21 6 5.7584 -0.7106 4.4598 22 6 7.2002 -0.3062 4.7738 23 1 7.8900 -0.7568 4.0603 24 7 7.3388 1.1604 4.7734 25 6 7.7306 1.5101 6.0119 26 8 7.9427 2.6567 6.3549 27 7 7.8574 0.4552 6.8249 28 6 7.5674 -0.6984 6.1913 29 8 7.5952 -1.8170 6.6576 30 1 -0.3634 0.4627 0.9175 31 1 -0.3634 0.5632 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1609 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8596 35 1 1.7690 1.9344 0.9176 36 1 2.9868 -0.3207 -1.5774 37 1 1.3263 -0.8255 -1.9977 38 1 3.0108 -5.4910 0.7270 39 1 2.7294 -2.8787 1.2170 40 1 1.0040 -2.6488 0.7985 41 1 3.9926 0.0466 0.8439 42 1 5.5105 0.7964 2.9408 43 1 6.0846 -0.7742 2.3311 44 1 5.6565 -1.7919 4.5518 45 1 5.0824 -0.2211 5.1609 46 1 7.1823 1.7571 4.0248 47 1 8.1286 0.5130 7.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717587832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:55 Heat of formation + Delta-G solvation = -90.824987 kcal Electronic energy + Delta-G solvation = -30174.888111 eV Core-core repulsion = 25971.758521 eV Total energy + Delta-G solvation = -4203.129591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.37175 -41.13626 -39.74245 -39.44212 -37.51557 -35.66610 -35.56429 -34.41583 -33.14325 -32.57054 -30.05052 -28.79112 -27.88117 -27.33216 -25.34568 -24.36562 -23.62496 -22.43718 -22.03815 -21.08910 -19.99720 -19.40233 -18.66545 -18.05260 -18.02841 -17.60478 -17.26325 -16.85314 -16.71693 -16.56531 -16.14910 -15.63689 -15.57413 -15.28512 -15.25163 -14.86512 -14.62506 -14.31828 -13.81791 -13.77531 -13.58877 -13.52513 -13.03487 -13.00348 -12.94039 -12.78058 -12.59404 -12.52157 -12.18456 -12.13492 -12.00055 -11.75098 -11.71964 -11.49578 -11.38851 -11.37851 -11.30827 -10.81341 -10.65981 -10.51112 -9.84676 -8.81118 -7.71967 -5.17410 0.52150 1.44574 1.47062 1.49490 1.56422 1.82926 1.95440 2.13881 2.40463 2.51509 2.95105 3.36905 3.56218 3.61981 3.73560 3.86792 3.91941 4.01012 4.11709 4.29051 4.31717 4.39121 4.46001 4.57337 4.66708 4.82340 4.86058 4.92464 4.95984 4.96975 5.07767 5.08321 5.14048 5.17011 5.24143 5.37122 5.37483 5.52097 5.57440 5.77482 5.82966 5.87141 5.89327 6.35542 6.37821 6.76487 7.12952 7.13638 7.47982 7.83101 8.46604 9.27566 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003066 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.653587 B = 9129.851601 C =10774.553787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.233 4.233 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.975 3.025 11 H -0.272 1.272 12 H -0.301 1.301 13 H -0.282 1.282 14 C 0.154 3.846 15 C 0.138 3.862 16 H 0.074 0.926 17 N -0.695 5.695 18 C 0.502 3.498 19 O -0.593 6.593 20 C -0.126 4.126 21 C -0.097 4.097 22 C 0.106 3.894 23 H 0.167 0.833 24 N -0.699 5.699 25 C 0.706 3.294 26 O -0.583 6.583 27 N -0.673 5.673 28 C 0.531 3.469 29 O -0.497 6.497 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.020 0.980 38 H 0.242 0.758 39 H 0.071 0.929 40 H -0.024 1.024 41 H 0.410 0.590 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.454 0.546 47 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.481 16.760 4.524 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.362 4.362 7 H 0.101 0.899 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.198 1.198 12 H -0.227 1.227 13 H -0.208 1.208 14 C 0.028 3.972 15 C 0.031 3.969 16 H 0.092 0.908 17 N -0.346 5.346 18 C 0.290 3.710 19 O -0.474 6.474 20 C -0.166 4.166 21 C -0.136 4.136 22 C -0.002 4.002 23 H 0.184 0.816 24 N -0.365 5.365 25 C 0.406 3.594 26 O -0.460 6.460 27 N -0.344 5.344 28 C 0.317 3.683 29 O -0.367 6.367 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.089 0.911 40 H -0.006 1.006 41 H 0.247 0.753 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.302 0.698 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 8.168 16.135 5.437 18.885 hybrid contribution 0.076 -1.214 -0.448 1.296 sum 8.244 14.921 4.989 17.762 Atomic orbital electron populations 1.21702 0.93007 1.00987 1.02887 1.21808 0.96495 0.96226 0.92922 1.21687 1.01138 0.92283 1.02959 1.21652 0.97148 0.84868 0.95036 1.44673 1.73871 1.08233 1.07477 1.19387 1.33228 0.90179 0.93439 0.89895 1.25580 1.02910 1.00013 0.97344 1.70104 1.55143 1.21999 1.12438 0.85204 0.78653 0.78456 0.77317 1.19769 1.22719 1.20809 1.21953 0.96357 0.93670 0.85269 1.22071 0.83233 0.95039 0.96532 0.90834 1.45717 1.14047 1.59694 1.15159 1.21347 0.90407 0.77834 0.81408 1.90703 1.64142 1.43689 1.48847 1.21632 0.91712 1.05509 0.97707 1.21385 0.92337 1.02930 0.96989 1.22169 1.00467 0.81928 0.95661 0.81568 1.45504 1.71139 1.07887 1.12003 1.15905 0.77608 0.83652 0.82275 1.91051 1.57485 1.19177 1.78263 1.44273 1.65019 1.08197 1.16874 1.21036 0.74294 0.83675 0.89257 1.90873 1.49966 1.22298 1.73583 0.91350 0.90338 0.95133 0.91548 0.90756 0.91495 0.94263 0.96173 0.94835 0.91071 1.00569 0.75298 0.84965 0.86048 0.90563 0.91139 0.69809 0.71765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.41 71.98 0.61 -2.92 16 2 C -0.07 -2.13 0.81 -50.99 -0.04 -2.17 16 3 C -0.12 -2.37 8.07 71.98 0.58 -1.79 16 4 C 0.14 5.02 6.41 86.73 0.56 5.58 16 5 N -0.62 -29.92 3.39 -691.99 -2.35 -32.27 16 6 C -0.23 -12.55 10.27 84.03 0.86 -11.69 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 9 N -0.95 -57.20 10.09 21.65 0.22 -56.99 16 10 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.15 7.61 5.27 86.86 0.46 8.06 16 15 C 0.14 4.96 2.56 46.39 0.12 5.08 16 16 H 0.07 2.81 7.63 -2.39 -0.02 2.79 16 17 N -0.70 -20.33 4.69 -435.95 -2.04 -22.37 16 18 C 0.50 14.95 7.83 87.66 0.69 15.64 16 19 O -0.59 -24.02 15.73 -3.05 -0.05 -24.07 16 20 C -0.13 -2.03 5.60 29.85 0.17 -1.86 16 21 C -0.10 -1.74 4.28 30.60 0.13 -1.61 16 22 C 0.11 1.24 3.70 44.37 0.16 1.40 16 23 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 24 N -0.70 -6.86 5.94 -459.59 -2.73 -9.59 16 25 C 0.71 11.48 8.99 179.44 1.61 13.09 16 26 O -0.58 -13.90 18.04 -3.85 -0.07 -13.97 16 27 N -0.67 -9.68 5.70 -441.13 -2.52 -12.20 16 28 C 0.53 9.10 8.14 87.94 0.72 9.82 16 29 O -0.50 -12.40 18.02 -2.86 -0.05 -12.45 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.03 7.57 -2.38 -0.02 1.01 16 33 H 0.07 1.11 6.35 -2.39 -0.02 1.09 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.04 1.31 7.76 -2.39 -0.02 1.29 16 37 H 0.02 0.76 7.84 -2.39 -0.02 0.74 16 38 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.07 4.16 5.87 -2.39 -0.01 4.15 16 40 H -0.02 -1.32 7.80 -2.39 -0.02 -1.33 16 41 H 0.41 9.47 6.89 -92.71 -0.64 8.84 16 42 H 0.13 1.00 7.36 -2.39 -0.02 0.98 16 43 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 45 H 0.07 1.45 8.10 -2.39 -0.02 1.44 16 46 H 0.45 2.18 8.37 -92.71 -0.78 1.41 16 47 H 0.44 4.96 8.96 -92.71 -0.83 4.12 16 Total: -1.00 -83.87 381.91 -1.69 -85.56 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -1.21 Total: 17.78 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 7.09 Total: 33.41 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -9.42 Total: -133.41 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.17 Total: -50.50 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -83.87 -1.69 -85.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717587832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.268 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds