Wall clock time and date at job start Tue Mar 31 2020 20:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.78043 * 2 1 4 4 C 1.54333 * 110.84767 * 236.93048 * 2 1 3 5 5 N 1.47024 * 107.26587 * 219.67313 * 4 2 1 6 6 C 1.36932 * 125.64836 * 178.85580 * 5 4 2 7 7 H 1.08001 * 120.00172 * 347.84778 * 6 5 4 8 8 C 1.38816 * 120.00317 * 167.85671 * 6 5 4 9 9 N 1.31617 * 119.99517 * 326.25272 * 8 6 5 10 10 Si 1.86790 * 120.00423 * 145.97935 * 8 6 5 11 11 H 1.48506 * 109.47312 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47452 * 120.00031 * 10 8 6 13 13 H 1.48507 * 109.47197 * 240.00000 * 10 8 6 14 14 C 1.47422 * 108.70201 * 358.58884 * 5 4 2 15 15 C 1.54907 * 104.83298 * 24.35380 * 14 5 4 16 16 H 1.08995 * 111.00605 * 204.87634 * 15 14 5 17 17 N 1.46499 * 111.00181 * 81.06496 * 15 14 5 18 18 C 1.34783 * 119.99944 * 86.45398 * 17 15 14 19 19 O 1.21277 * 120.00205 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99987 * 179.97438 * 18 17 15 21 21 C 1.52999 * 109.47178 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46923 * 180.02562 * 21 20 18 23 23 H 1.08994 * 110.53725 * 52.16883 * 22 21 20 24 24 N 1.47310 * 110.59832 * 289.17171 * 22 21 20 25 25 C 1.34524 * 106.62119 * 241.47914 * 24 22 21 26 26 O 1.21537 * 123.77081 * 179.97438 * 25 24 22 27 27 N 1.33792 * 112.45930 * 359.97438 * 25 24 22 28 28 C 1.34769 * 111.64275 * 0.02562 * 27 25 24 29 29 O 1.21238 * 127.15928 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.46786 * 296.75979 * 1 2 3 31 31 H 1.09001 * 109.47057 * 56.75875 * 1 2 3 32 32 H 1.09001 * 109.47206 * 176.76225 * 1 2 3 33 33 H 1.09001 * 109.47420 * 183.23517 * 3 2 1 34 34 H 1.08998 * 109.47355 * 303.24169 * 3 2 1 35 35 H 1.09006 * 109.47342 * 63.24265 * 3 2 1 36 36 H 1.09001 * 109.98785 * 100.20223 * 4 2 1 37 37 H 1.09002 * 109.78330 * 339.03089 * 4 2 1 38 38 H 0.97006 * 120.00329 * 353.97265 * 9 8 6 39 39 H 1.08998 * 110.36625 * 143.19544 * 14 5 4 40 40 H 1.09006 * 110.36561 * 265.40832 * 14 5 4 41 41 H 0.96998 * 120.00113 * 266.45420 * 17 15 14 42 42 H 1.08997 * 109.47542 * 300.00543 * 20 18 17 43 43 H 1.09010 * 109.46421 * 60.00206 * 20 18 17 44 44 H 1.08998 * 109.46782 * 300.00181 * 21 20 18 45 45 H 1.08999 * 109.46763 * 60.00251 * 21 20 18 46 46 H 0.97002 * 126.68750 * 61.45513 * 24 22 21 47 47 H 0.96999 * 124.18417 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0793 -0.7870 -1.2086 5 7 3.2445 -1.5508 -0.7390 6 6 4.0043 -2.3969 -1.5018 7 1 3.6581 -2.7012 -2.4786 8 6 5.2194 -2.8638 -1.0197 9 7 5.9611 -2.0954 -0.2504 10 14 5.7983 -4.5852 -1.4563 11 1 4.7868 -5.2430 -2.3221 12 1 7.0922 -4.5036 -2.1803 13 1 5.9758 -5.3780 -0.2132 14 6 3.4632 -1.2499 0.6875 15 6 2.0790 -0.7955 1.2137 16 1 2.1849 -0.1525 2.0874 17 7 1.2271 -1.9488 1.5144 18 6 1.2971 -2.5416 2.7228 19 8 2.0650 -2.1199 3.5615 20 6 0.4204 -3.7277 3.0323 21 6 0.6952 -4.2065 4.4592 22 6 -0.1944 -5.4110 4.7731 23 1 -0.0918 -6.1737 4.0012 24 7 -1.6007 -4.9948 4.9110 25 6 -1.9702 -5.2979 6.1685 26 8 -3.0793 -5.0839 6.6170 27 7 -0.9803 -5.8615 6.8703 28 6 0.1431 -5.9829 6.1358 29 8 1.2029 -6.4526 6.4907 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0580 33 1 3.1610 1.4061 -0.0580 34 1 1.6751 1.9700 -0.8595 35 1 1.7692 1.9343 0.9177 36 1 2.3814 -0.0969 -1.9964 37 1 1.3155 -1.4687 -1.5829 38 1 5.7025 -1.1740 -0.0915 39 1 3.7960 -2.1427 1.2168 40 1 4.1946 -0.4492 0.7985 41 1 0.6127 -2.2859 0.8437 42 1 -0.6267 -3.4393 2.9407 43 1 0.6382 -4.5332 2.3308 44 1 1.7424 -4.4950 4.5502 45 1 0.4779 -3.4011 5.1608 46 1 -2.1526 -4.5821 4.2283 47 1 -1.0608 -6.1467 7.7939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717587833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:00 Heat of formation + Delta-G solvation = -97.789326 kcal Electronic energy + Delta-G solvation = -30136.662835 eV Core-core repulsion = 25933.231249 eV Total energy + Delta-G solvation = -4203.431587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.38074 -41.30844 -39.76616 -39.59471 -37.53013 -35.92400 -35.60792 -34.54466 -33.20977 -32.61841 -30.19474 -28.84259 -27.92203 -27.17418 -25.48973 -24.39296 -23.64773 -22.48013 -22.13382 -21.20139 -20.13386 -19.42582 -19.38071 -18.14103 -18.01701 -17.62475 -17.31348 -16.86409 -16.78863 -16.35816 -16.10155 -15.74713 -15.62373 -15.37080 -15.31627 -15.03364 -14.83548 -14.64686 -14.13614 -13.83099 -13.72402 -13.64711 -13.10789 -13.01134 -12.93444 -12.73958 -12.58112 -12.47901 -12.22123 -12.01919 -11.91740 -11.85956 -11.81520 -11.64194 -11.50664 -11.42029 -11.39788 -10.85193 -10.52786 -10.45366 -10.02458 -8.99092 -8.36826 -5.25792 0.50976 1.43427 1.56379 1.63961 1.71255 1.79750 1.94264 2.11295 2.29118 2.64274 2.93174 3.15527 3.44323 3.51111 3.53636 3.83840 3.85374 3.86914 3.99020 4.22594 4.29240 4.31217 4.36760 4.37499 4.59373 4.63608 4.76338 4.78455 4.86879 4.92529 4.93413 4.99848 5.04177 5.06369 5.12231 5.13867 5.21941 5.32088 5.46682 5.60679 5.70428 5.81980 5.86423 6.29057 6.36885 6.64521 6.88611 7.12542 7.35530 7.72505 8.31929 8.97210 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003097 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.662609 B = 9040.282392 C =10720.847782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.130 4.130 4 C 0.138 3.862 5 N -0.614 5.614 6 C -0.343 4.343 7 H 0.066 0.934 8 C -0.079 4.079 9 N -0.941 5.941 10 Si 1.110 2.890 11 H -0.264 1.264 12 H -0.295 1.295 13 H -0.294 1.294 14 C 0.151 3.849 15 C 0.150 3.850 16 H 0.083 0.917 17 N -0.697 5.697 18 C 0.502 3.498 19 O -0.593 6.593 20 C -0.127 4.127 21 C -0.099 4.099 22 C 0.106 3.894 23 H 0.170 0.830 24 N -0.699 5.699 25 C 0.706 3.294 26 O -0.583 6.583 27 N -0.674 5.674 28 C 0.530 3.470 29 O -0.497 6.497 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.014 0.986 37 H 0.043 0.957 38 H 0.251 0.749 39 H 0.008 0.992 40 H -0.006 1.006 41 H 0.413 0.587 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.454 0.546 47 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.020 -3.610 6.086 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C -0.188 4.188 4 C 0.013 3.987 5 N -0.341 5.341 6 C -0.472 4.472 7 H 0.084 0.916 8 C -0.275 4.275 9 N -0.584 5.584 10 Si 0.935 3.065 11 H -0.189 1.189 12 H -0.222 1.222 13 H -0.221 1.221 14 C 0.024 3.976 15 C 0.043 3.957 16 H 0.101 0.899 17 N -0.349 5.349 18 C 0.291 3.709 19 O -0.474 6.474 20 C -0.166 4.166 21 C -0.139 4.139 22 C -0.002 4.002 23 H 0.187 0.813 24 N -0.365 5.365 25 C 0.405 3.595 26 O -0.460 6.460 27 N -0.344 5.344 28 C 0.316 3.684 29 O -0.368 6.368 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.012 0.988 41 H 0.251 0.749 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.302 0.698 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.268 -4.624 7.166 21.071 hybrid contribution -0.486 1.363 -0.345 1.488 sum -19.754 -3.261 6.821 21.152 Atomic orbital electron populations 1.21691 0.90231 1.02903 1.03224 1.21813 0.98050 0.94984 0.92378 1.21732 0.99666 0.94193 1.03205 1.21669 0.89180 0.92857 0.94976 1.44782 1.32371 1.51464 1.05509 1.19953 1.02040 1.22647 1.02534 0.91634 1.26979 0.92746 1.07880 0.99944 1.70860 1.36657 1.07502 1.43369 0.82965 0.75423 0.72295 0.75798 1.18861 1.22232 1.22071 1.21611 0.94767 0.95725 0.85489 1.21876 0.89390 0.87488 0.96943 0.89899 1.45764 1.41764 1.31942 1.15431 1.21462 0.83298 0.84981 0.81205 1.90713 1.41554 1.66314 1.48777 1.21681 1.01476 0.95729 0.97750 1.21421 0.99622 0.95748 0.97077 1.22171 0.82042 0.99322 0.96678 0.81309 1.45488 1.13051 1.65312 1.12636 1.15912 0.83232 0.77807 0.82530 1.91052 1.21307 1.60062 1.73588 1.44287 1.13254 1.58727 1.18156 1.21070 0.82548 0.76491 0.88255 1.90881 1.25366 1.43325 1.77179 0.91086 0.90735 0.91287 0.95419 0.90342 0.90849 0.96798 0.93890 0.93889 0.97345 0.98847 0.74909 0.84579 0.85678 0.90617 0.90952 0.69782 0.71797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.08 71.98 0.58 -1.63 16 2 C -0.07 -2.00 0.81 -50.99 -0.04 -2.04 16 3 C -0.13 -3.53 8.39 71.98 0.60 -2.93 16 4 C 0.14 5.07 6.42 86.73 0.56 5.62 16 5 N -0.61 -29.85 3.33 -691.97 -2.30 -32.15 16 6 C -0.34 -19.01 9.97 84.04 0.84 -18.18 16 7 H 0.07 3.57 8.02 -2.91 -0.02 3.55 16 8 C -0.08 -4.58 4.96 84.86 0.42 -4.16 16 9 N -0.94 -59.54 12.86 21.65 0.28 -59.26 16 10 Si 1.11 51.45 30.03 68.60 2.06 53.51 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 14 C 0.15 7.24 4.71 86.85 0.41 7.65 16 15 C 0.15 5.10 2.56 46.38 0.12 5.22 16 16 H 0.08 2.95 7.63 -2.39 -0.02 2.93 16 17 N -0.70 -18.76 4.69 -435.97 -2.05 -20.80 16 18 C 0.50 13.67 7.83 87.66 0.69 14.35 16 19 O -0.59 -22.52 15.73 -3.02 -0.05 -22.57 16 20 C -0.13 -1.73 5.64 29.85 0.17 -1.56 16 21 C -0.10 -1.58 4.25 30.59 0.13 -1.45 16 22 C 0.11 1.07 3.65 44.37 0.16 1.23 16 23 H 0.17 0.70 8.14 -2.39 -0.02 0.68 16 24 N -0.70 -5.94 6.06 -459.61 -2.79 -8.72 16 25 C 0.71 10.83 8.99 179.44 1.61 12.44 16 26 O -0.58 -13.50 18.04 -3.83 -0.07 -13.57 16 27 N -0.67 -9.13 5.70 -441.11 -2.52 -11.65 16 28 C 0.53 8.51 8.14 87.94 0.72 9.22 16 29 O -0.50 -11.93 18.02 -2.90 -0.05 -11.98 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.05 6.36 -2.39 -0.02 1.03 16 33 H 0.03 0.93 7.58 -2.39 -0.02 0.91 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.01 0.55 7.84 -2.39 -0.02 0.53 16 37 H 0.04 1.44 7.77 -2.39 -0.02 1.42 16 38 H 0.25 16.31 6.43 -92.70 -0.60 15.71 16 39 H 0.01 0.46 7.81 -2.39 -0.02 0.44 16 40 H -0.01 -0.33 6.68 -2.38 -0.02 -0.34 16 41 H 0.41 8.56 6.88 -92.71 -0.64 7.93 16 42 H 0.14 0.68 7.68 -2.39 -0.02 0.66 16 43 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 45 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 46 H 0.45 1.55 8.61 -92.71 -0.80 0.75 16 47 H 0.44 4.67 8.96 -92.71 -0.83 3.84 16 Total: -1.00 -87.91 383.49 -1.58 -89.49 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.06 Total: 13.88 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.96 Total: 23.81 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -9.37 Total: -132.58 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -0.17 Total: -48.12 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.06 Total: 53.51 kcal Total: -87.91 -1.58 -89.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717587833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.298 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds