Wall clock time and date at job start Tue Mar 31 2020 21:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00055 * 2 1 4 4 C 1.53000 * 109.46743 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47075 * 65.00257 * 4 3 2 6 6 C 1.36932 * 119.99438 * 269.99335 * 5 4 3 7 7 H 1.08013 * 119.99551 * 141.46129 * 6 5 4 8 8 C 1.38815 * 120.00563 * 321.45957 * 6 5 4 9 9 N 1.31615 * 119.99675 * 338.83257 * 8 6 5 10 10 Si 1.86802 * 119.99836 * 158.83175 * 8 6 5 11 11 H 1.48501 * 109.46877 * 90.00453 * 10 8 6 12 12 H 1.48497 * 109.46662 * 209.99681 * 10 8 6 13 13 H 1.48497 * 109.47170 * 330.00094 * 10 8 6 14 14 C 1.46496 * 120.00108 * 89.99614 * 5 4 3 15 15 C 1.52997 * 109.47376 * 264.70905 * 14 5 4 16 16 N 1.46496 * 109.47376 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00255 * 179.97438 * 16 15 14 18 18 O 1.21551 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.47819 * 120.00282 * 180.02562 * 17 16 15 20 20 C 1.40081 * 121.17893 * 89.71309 * 19 17 16 21 21 C 1.50703 * 121.05738 * 0.02562 * 20 19 17 22 22 C 1.38480 * 117.88181 * 179.78361 * 20 19 17 23 23 C 1.50700 * 119.93054 * 180.24084 * 22 20 19 24 24 N 1.31877 * 120.13577 * 0.50722 * 22 20 19 25 25 N 1.28276 * 122.62588 * 359.73712 * 24 22 20 26 26 C 1.32484 * 122.21555 * 0.02562 * 25 24 22 27 27 O 1.35452 * 120.25054 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47394 * 300.00398 * 1 2 3 30 30 H 1.09001 * 109.47235 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99528 * 3 2 1 32 32 H 1.09004 * 109.47101 * 299.99996 * 3 2 1 33 33 H 1.08994 * 109.47356 * 304.99756 * 4 3 2 34 34 H 1.09002 * 109.46530 * 184.99755 * 4 3 2 35 35 H 0.97000 * 120.00052 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47281 * 144.70483 * 14 5 4 37 37 H 1.09007 * 109.47065 * 24.70910 * 14 5 4 38 38 H 1.09003 * 109.47260 * 59.99565 * 15 14 5 39 39 H 1.08997 * 109.47134 * 300.00120 * 15 14 5 40 40 H 0.96999 * 120.00096 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47301 * 89.99593 * 21 20 19 42 42 H 1.08993 * 109.46814 * 209.99489 * 21 20 19 43 43 H 1.08992 * 109.46898 * 329.99754 * 21 20 19 44 44 H 1.09001 * 109.47318 * 270.26210 * 23 22 20 45 45 H 1.08998 * 109.47319 * 30.26348 * 23 22 20 46 46 H 1.09003 * 109.47101 * 150.26606 * 23 22 20 47 47 H 0.96702 * 113.99535 * 269.97890 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3344 7 1 3.8084 -1.3109 -2.2396 8 6 4.5924 -1.5178 -0.2558 9 7 5.3193 -0.9145 0.6607 10 14 4.2264 -3.3434 -0.1051 11 1 5.2895 -4.1197 -0.7925 12 1 4.1856 -3.7232 1.3299 13 1 2.9134 -3.6385 -0.7329 14 6 4.2882 1.3997 -2.4130 15 6 3.0609 1.4870 -3.3223 16 7 3.3727 2.3223 -4.4847 17 6 2.4353 2.5414 -5.4280 18 8 1.3314 2.0456 -5.3145 19 6 2.7501 3.3838 -6.6012 20 6 3.2835 2.8278 -7.7711 21 6 3.5551 1.3491 -7.8754 22 6 3.5484 3.6794 -8.8304 23 6 4.1176 3.1296 -10.1130 24 7 3.3086 4.9712 -8.7174 25 7 2.8252 5.4942 -7.6505 26 6 2.5311 4.7710 -6.5801 27 8 2.0216 5.3647 -5.4744 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.6647 -1.4177 1.4146 36 1 5.1188 0.9596 -2.9649 37 1 4.5640 2.3996 -2.0779 38 1 2.2303 1.9271 -2.7704 39 1 2.7851 0.4871 -3.6574 40 1 4.2538 2.7177 -4.5755 41 1 2.6705 0.8437 -8.2628 42 1 4.3945 1.1807 -8.5500 43 1 3.7967 0.9537 -6.8889 44 1 5.2064 3.1422 -10.0622 45 1 3.7723 2.1054 -10.2541 46 1 3.7859 3.7436 -10.9503 47 1 2.6916 5.6622 -4.8437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717975381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:35 Heat of formation + Delta-G solvation = -39.554161 kcal Electronic energy + Delta-G solvation = -29939.378136 eV Core-core repulsion = 25738.471815 eV Total energy + Delta-G solvation = -4200.906321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76170 -39.45772 -38.07093 -37.32615 -35.87825 -35.22122 -34.31979 -32.96864 -31.45420 -29.66163 -28.98704 -28.33977 -27.47195 -25.66342 -24.92712 -23.72676 -22.98724 -21.84452 -20.86501 -20.24784 -19.25360 -18.45414 -17.64229 -16.79974 -16.53729 -15.94576 -15.60044 -15.15401 -15.11532 -14.91424 -14.75889 -14.58846 -14.07377 -13.85887 -13.79318 -13.56129 -13.45841 -13.30594 -13.21954 -13.08338 -12.69256 -12.50397 -12.38500 -12.06258 -11.84729 -11.50157 -11.25579 -10.94756 -10.82769 -10.79821 -10.67769 -10.53881 -10.18283 -10.10038 -10.03262 -9.78702 -9.75445 -9.62814 -9.01978 -8.76269 -8.45531 -6.64442 -5.80434 -3.38303 0.16540 0.37263 2.35085 2.80822 3.00354 3.09790 3.39193 3.47071 3.54423 3.73494 4.02053 4.18817 4.38605 4.51374 4.57740 4.67047 4.85741 5.00060 5.11376 5.14953 5.29661 5.31127 5.37994 5.46678 5.51761 5.57343 5.67211 5.72249 5.77097 5.81982 5.84481 6.01977 6.12419 6.19145 6.21974 6.40375 6.53090 6.56266 6.61267 6.81733 6.96766 7.41659 7.56545 7.82346 8.04599 8.07090 8.28849 8.51602 9.14324 9.77794 10.31706 11.22184 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.002838 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.473804 B = 9862.295902 C =10671.733796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.569 5.569 6 C -0.249 4.249 7 H 0.056 0.944 8 C 0.024 3.976 9 N -0.891 5.891 10 Si 0.899 3.101 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.139 3.861 15 C 0.094 3.906 16 N -0.712 5.712 17 C 0.566 3.434 18 O -0.517 6.517 19 C -0.142 4.142 20 C -0.030 4.030 21 C -0.126 4.126 22 C 0.059 3.941 23 C -0.101 4.101 24 N -0.208 5.208 25 N -0.256 5.256 26 C 0.286 3.714 27 O -0.465 6.465 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 8.808 -14.334 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.288 5.288 6 C -0.379 4.379 7 H 0.074 0.926 8 C -0.176 4.176 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.011 3.989 15 C -0.031 4.031 16 N -0.363 5.363 17 C 0.348 3.652 18 O -0.392 6.392 19 C -0.157 4.157 20 C -0.042 4.042 21 C -0.183 4.183 22 C -0.086 4.086 23 C -0.159 4.159 24 N -0.053 5.053 25 N -0.107 5.107 26 C 0.100 3.900 27 O -0.271 6.271 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.231 0.769 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.835 9.578 -14.861 17.775 hybrid contribution 0.013 -1.603 1.172 1.986 sum -1.821 7.975 -13.689 15.947 Atomic orbital electron populations 1.22642 0.84110 1.01550 0.98505 1.88205 1.16655 1.27502 1.94834 1.23491 0.98752 0.84314 0.96991 1.21073 0.87554 0.96623 0.93022 1.43509 1.75452 1.02883 1.06976 1.18785 1.36590 0.81267 1.01225 0.92592 1.25058 0.95912 0.97862 0.98817 1.69974 1.33515 1.36024 1.13778 0.86382 0.78403 0.85417 0.76968 1.21635 1.21613 1.20160 1.20987 0.93027 0.94904 0.90022 1.22624 1.01567 0.94078 0.84819 1.46145 1.14987 1.51874 1.23250 1.17660 0.85208 0.80522 0.81788 1.90856 1.21909 1.49605 1.76803 1.21485 1.01598 0.95073 0.97586 1.21145 0.93060 0.98815 0.91143 1.21014 1.03704 0.88705 1.04878 1.22786 0.97630 0.91134 0.97098 1.20734 1.01543 1.01570 0.92068 1.72831 1.06832 1.11113 1.14517 1.73033 1.09467 1.31665 0.96546 1.20834 0.92104 0.87315 0.89700 1.84779 1.35090 1.78711 1.28471 0.90686 0.95517 0.95163 0.95709 0.95307 0.87941 0.94044 0.93620 0.92885 0.94098 0.91911 0.91148 0.76894 0.88925 0.89261 0.89869 0.89413 0.89750 0.89562 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.77 10.18 -35.23 -0.36 -8.13 16 3 C 0.04 0.86 6.28 37.16 0.23 1.10 16 4 C 0.14 3.16 5.76 -4.04 -0.02 3.14 16 5 N -0.57 -13.01 2.41 -173.24 -0.42 -13.42 16 6 C -0.25 -6.49 8.95 -15.06 -0.13 -6.62 16 7 H 0.06 1.48 7.92 -52.48 -0.42 1.07 16 8 C 0.02 0.64 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -24.75 11.53 55.49 0.64 -24.11 16 10 Si 0.90 21.66 29.60 -169.99 -5.03 16.63 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.14 2.51 5.83 -4.05 -0.02 2.48 16 15 C 0.09 1.58 5.97 -4.05 -0.02 1.56 16 16 N -0.71 -9.32 5.55 -61.26 -0.34 -9.66 16 17 C 0.57 8.31 5.62 -12.34 -0.07 8.24 16 18 O -0.52 -9.92 17.11 5.32 0.09 -9.83 16 19 C -0.14 -1.78 5.69 -104.45 -0.59 -2.37 16 20 C -0.03 -0.31 5.96 -103.84 -0.62 -0.93 16 21 C -0.13 -1.02 8.92 36.01 0.32 -0.70 16 22 C 0.06 0.58 6.86 -82.48 -0.57 0.01 16 23 C -0.10 -0.58 9.42 36.01 0.34 -0.24 16 24 N -0.21 -2.57 11.40 33.56 0.38 -2.19 16 25 N -0.26 -3.46 11.52 30.73 0.35 -3.11 16 26 C 0.29 3.67 7.88 -16.44 -0.13 3.54 16 27 O -0.46 -5.46 13.09 -18.05 -0.24 -5.69 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.55 6.48 -51.93 -0.34 0.21 16 33 H 0.10 2.63 5.58 -51.93 -0.29 2.34 16 34 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 35 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.04 0.66 7.83 -51.92 -0.41 0.25 16 38 H 0.06 1.15 6.48 -51.93 -0.34 0.82 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.40 4.01 8.46 -40.82 -0.35 3.66 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.47 6.83 -51.93 -0.35 0.11 16 43 H 0.08 0.78 7.24 -51.93 -0.38 0.41 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.34 6.80 -51.93 -0.35 -0.01 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.41 2.64 9.06 45.56 0.41 3.05 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -34.77 394.86 -5.38 -40.15 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.15 Total: 2.05 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.26 Total: 11.36 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.62 Total: -52.49 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.50 Total: -23.65 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.77 -5.38 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.591 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds