Wall clock time and date at job start Tue Mar 31 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00055 * 2 1 4 4 C 1.53000 * 109.46743 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47075 * 65.00257 * 4 3 2 6 6 C 1.36932 * 119.99438 * 269.99335 * 5 4 3 7 7 H 1.08013 * 119.99551 * 141.46129 * 6 5 4 8 8 C 1.38815 * 120.00563 * 321.45957 * 6 5 4 9 9 N 1.31615 * 119.99675 * 338.83257 * 8 6 5 10 10 Si 1.86802 * 119.99836 * 158.83175 * 8 6 5 11 11 H 1.48501 * 109.46877 * 90.00453 * 10 8 6 12 12 H 1.48497 * 109.46662 * 209.99681 * 10 8 6 13 13 H 1.48497 * 109.47170 * 330.00094 * 10 8 6 14 14 C 1.46496 * 120.00108 * 89.99614 * 5 4 3 15 15 C 1.52997 * 109.47376 * 264.70905 * 14 5 4 16 16 N 1.46496 * 109.47376 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00255 * 179.97438 * 16 15 14 18 18 O 1.21551 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.47819 * 120.00282 * 180.02562 * 17 16 15 20 20 C 1.40081 * 121.17893 * 89.71309 * 19 17 16 21 21 C 1.50703 * 121.05738 * 0.02562 * 20 19 17 22 22 C 1.38480 * 117.88181 * 179.78361 * 20 19 17 23 23 C 1.50700 * 119.93054 * 180.24084 * 22 20 19 24 24 N 1.31877 * 120.13577 * 0.50722 * 22 20 19 25 25 N 1.28276 * 122.62588 * 359.73712 * 24 22 20 26 26 C 1.32484 * 122.21555 * 0.02562 * 25 24 22 27 27 O 1.35452 * 120.25054 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47394 * 300.00398 * 1 2 3 30 30 H 1.09001 * 109.47235 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99528 * 3 2 1 32 32 H 1.09004 * 109.47101 * 299.99996 * 3 2 1 33 33 H 1.08994 * 109.47356 * 304.99756 * 4 3 2 34 34 H 1.09002 * 109.46530 * 184.99755 * 4 3 2 35 35 H 0.97000 * 120.00052 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47281 * 144.70483 * 14 5 4 37 37 H 1.09007 * 109.47065 * 24.70910 * 14 5 4 38 38 H 1.09003 * 109.47260 * 59.99565 * 15 14 5 39 39 H 1.08997 * 109.47134 * 300.00120 * 15 14 5 40 40 H 0.96999 * 120.00096 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47301 * 89.99593 * 21 20 19 42 42 H 1.08993 * 109.46814 * 209.99489 * 21 20 19 43 43 H 1.08992 * 109.46898 * 329.99754 * 21 20 19 44 44 H 1.09001 * 109.47318 * 270.26210 * 23 22 20 45 45 H 1.08998 * 109.47319 * 30.26348 * 23 22 20 46 46 H 1.09003 * 109.47101 * 150.26606 * 23 22 20 47 47 H 0.96702 * 113.99535 * 269.97890 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3344 7 1 3.8084 -1.3109 -2.2396 8 6 4.5924 -1.5178 -0.2558 9 7 5.3193 -0.9145 0.6607 10 14 4.2264 -3.3434 -0.1051 11 1 5.2895 -4.1197 -0.7925 12 1 4.1856 -3.7232 1.3299 13 1 2.9134 -3.6385 -0.7329 14 6 4.2882 1.3997 -2.4130 15 6 3.0609 1.4870 -3.3223 16 7 3.3727 2.3223 -4.4847 17 6 2.4353 2.5414 -5.4280 18 8 1.3314 2.0456 -5.3145 19 6 2.7501 3.3838 -6.6012 20 6 3.2835 2.8278 -7.7711 21 6 3.5551 1.3491 -7.8754 22 6 3.5484 3.6794 -8.8304 23 6 4.1176 3.1296 -10.1130 24 7 3.3086 4.9712 -8.7174 25 7 2.8252 5.4942 -7.6505 26 6 2.5311 4.7710 -6.5801 27 8 2.0216 5.3647 -5.4744 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.6647 -1.4177 1.4146 36 1 5.1188 0.9596 -2.9649 37 1 4.5640 2.3996 -2.0779 38 1 2.2303 1.9271 -2.7704 39 1 2.7851 0.4871 -3.6574 40 1 4.2538 2.7177 -4.5755 41 1 2.6705 0.8437 -8.2628 42 1 4.3945 1.1807 -8.5500 43 1 3.7967 0.9537 -6.8889 44 1 5.2064 3.1422 -10.0622 45 1 3.7723 2.1054 -10.2541 46 1 3.7859 3.7436 -10.9503 47 1 2.6916 5.6622 -4.8437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717975381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:33 Heat of formation + Delta-G solvation = -69.119032 kcal Electronic energy + Delta-G solvation = -29940.660165 eV Core-core repulsion = 25738.471815 eV Total energy + Delta-G solvation = -4202.188350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.66688 -40.66397 -38.97569 -38.90033 -37.44993 -36.07526 -35.78319 -33.86774 -33.28031 -31.12510 -29.88199 -29.24122 -28.81106 -27.16887 -26.20278 -25.15558 -23.82932 -23.29648 -22.26883 -21.71531 -20.12713 -19.43650 -18.79028 -18.50272 -17.65990 -17.31713 -16.93201 -16.67588 -16.48873 -16.20990 -15.89876 -15.73805 -15.51263 -15.32470 -15.02342 -14.83919 -14.51303 -14.22138 -14.15822 -13.92813 -13.65250 -13.59660 -13.42345 -13.31472 -13.02655 -12.91161 -12.70194 -12.50110 -12.41230 -12.36486 -12.31130 -11.97521 -11.77746 -11.67867 -11.53951 -11.09404 -10.62608 -10.54557 -10.45488 -10.41541 -10.17988 -8.53726 -7.78629 -5.38652 -0.73653 -0.44918 1.18509 1.45645 1.50874 1.60204 1.80216 2.03976 2.22471 2.57139 2.93251 3.17544 3.22917 3.27262 3.36354 3.55213 3.76638 3.80620 4.08859 4.19690 4.25504 4.32737 4.40419 4.49951 4.51713 4.56085 4.64225 4.69383 4.71503 4.72747 4.77482 4.80684 4.88674 4.95010 4.95831 4.99131 5.07509 5.11411 5.30836 5.37878 5.72174 5.79335 6.25996 6.31228 6.46191 6.64335 6.93398 7.23212 7.41577 7.89561 8.39002 9.19335 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.002838 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.473804 B = 9862.295902 C =10671.733796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.050 3.950 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.245 4.245 7 H 0.045 0.955 8 C -0.019 4.019 9 N -0.915 5.915 10 Si 0.944 3.056 11 H -0.283 1.283 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.143 3.857 15 C 0.118 3.882 16 N -0.693 5.693 17 C 0.576 3.424 18 O -0.566 6.566 19 C -0.159 4.159 20 C -0.020 4.020 21 C -0.127 4.127 22 C 0.066 3.934 23 C -0.102 4.102 24 N -0.228 5.228 25 N -0.281 5.281 26 C 0.285 3.715 27 O -0.479 6.479 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.416 0.584 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 9.180 -16.012 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.028 4.028 4 C 0.016 3.984 5 N -0.305 5.305 6 C -0.375 4.375 7 H 0.062 0.938 8 C -0.217 4.217 9 N -0.559 5.559 10 Si 0.774 3.226 11 H -0.209 1.209 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.016 3.984 15 C -0.008 4.008 16 N -0.345 5.345 17 C 0.360 3.640 18 O -0.444 6.444 19 C -0.174 4.174 20 C -0.032 4.032 21 C -0.184 4.184 22 C -0.080 4.080 23 C -0.160 4.160 24 N -0.072 5.072 25 N -0.132 5.132 26 C 0.098 3.902 27 O -0.288 6.288 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -1.317 9.999 -16.555 19.385 hybrid contribution -0.154 -1.683 1.610 2.334 sum -1.471 8.316 -14.945 17.166 Atomic orbital electron populations 1.22796 0.81831 1.02567 0.99807 1.88131 1.19312 1.28795 1.95156 1.23363 0.97153 0.83976 0.98324 1.21016 0.89246 0.96672 0.91479 1.43656 1.75960 1.02459 1.08439 1.18855 1.35043 0.83083 1.00566 0.93753 1.25540 0.96577 1.00447 0.99116 1.70066 1.34873 1.36747 1.14204 0.85663 0.77945 0.82648 0.76380 1.20944 1.22141 1.20718 1.21032 0.93248 0.95464 0.88658 1.22064 1.00381 0.92993 0.85400 1.45843 1.15754 1.50952 1.21933 1.17861 0.84313 0.79721 0.82065 1.90831 1.23954 1.51691 1.77949 1.21309 1.03755 0.94749 0.97590 1.21474 0.91395 1.00026 0.90283 1.21146 1.05319 0.86844 1.05051 1.23382 0.96251 0.90066 0.98291 1.20955 1.02664 1.02561 0.89781 1.72766 1.07480 1.12603 1.14347 1.72990 1.10702 1.32451 0.97042 1.20853 0.92096 0.87381 0.89882 1.84731 1.36461 1.78801 1.28769 0.89950 0.93264 0.94651 0.93466 0.94591 0.91571 0.92002 0.94153 0.92846 0.91372 0.93215 0.94050 0.74742 0.88424 0.85636 0.91288 0.87272 0.87535 0.89141 0.71031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -17.18 10.18 -148.98 -1.52 -18.69 16 3 C 0.05 1.95 6.28 71.98 0.45 2.40 16 4 C 0.14 6.18 5.76 86.38 0.50 6.68 16 5 N -0.58 -26.58 2.41 -701.99 -1.69 -28.27 16 6 C -0.25 -12.84 8.95 84.04 0.75 -12.09 16 7 H 0.04 2.39 7.92 -2.90 -0.02 2.37 16 8 C -0.02 -1.05 4.95 84.86 0.42 -0.63 16 9 N -0.91 -51.48 11.53 21.65 0.25 -51.23 16 10 Si 0.94 44.99 29.60 68.60 2.03 47.02 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 C 0.14 5.00 5.83 86.38 0.50 5.50 16 15 C 0.12 3.89 5.97 86.38 0.52 4.41 16 16 N -0.69 -17.41 5.55 -466.01 -2.59 -20.00 16 17 C 0.58 16.61 5.62 86.78 0.49 17.09 16 18 O -0.57 -21.90 17.11 -3.88 -0.07 -21.97 16 19 C -0.16 -3.83 5.69 -19.76 -0.11 -3.94 16 20 C -0.02 -0.37 5.96 -19.36 -0.12 -0.49 16 21 C -0.13 -1.72 8.92 71.24 0.64 -1.09 16 22 C 0.07 1.14 6.86 42.61 0.29 1.44 16 23 C -0.10 -0.79 9.42 71.24 0.67 -0.12 16 24 N -0.23 -5.34 11.40 -47.73 -0.54 -5.88 16 25 N -0.28 -7.45 11.52 -169.57 -1.95 -9.40 16 26 C 0.28 7.13 7.88 85.13 0.67 7.80 16 27 O -0.48 -11.02 13.09 -87.50 -1.15 -12.16 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.33 6.48 -2.38 -0.02 1.31 16 33 H 0.07 3.44 5.58 -2.39 -0.01 3.42 16 34 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 35 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 37 H 0.07 2.03 7.83 -2.38 -0.02 2.01 16 38 H 0.05 1.80 6.48 -2.39 -0.02 1.79 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.42 7.59 8.46 -92.71 -0.78 6.80 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.13 0.78 6.83 -2.39 -0.02 0.76 16 43 H 0.07 1.17 7.24 -2.39 -0.02 1.16 16 44 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.11 0.40 6.80 -2.39 -0.02 0.38 16 46 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.43 5.18 9.06 -74.06 -0.67 4.51 16 Total: -1.00 -77.07 394.86 -0.74 -77.81 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.43 Total: 13.69 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: 6.92 Total: 29.09 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -6.53 Total: -114.78 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -2.73 Total: -52.82 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.07 -0.74 -77.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.687 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds