Wall clock time and date at job start Tue Mar 31 2020 22:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 C 1.35316 * 126.66111 * 90.00133 * 3 2 1 5 5 C 1.42278 * 103.91726 * 179.77551 * 4 3 2 6 6 C 1.48329 * 126.93406 * 180.24699 * 5 4 3 7 7 O 1.21498 * 120.00414 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00341 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46620 * 34.99843 * 9 8 6 11 11 C 1.52998 * 109.46867 * 274.99669 * 9 8 6 12 12 C 1.52997 * 109.47052 * 154.99543 * 9 8 6 13 13 N 1.46901 * 109.47623 * 305.00246 * 12 9 8 14 14 C 1.46901 * 110.99422 * 293.95242 * 13 12 9 15 15 C 1.46900 * 111.00005 * 170.00210 * 13 12 9 16 16 C 1.50704 * 109.46742 * 189.99912 * 15 13 12 17 17 O 1.21297 * 119.99904 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99755 * 180.02562 * 16 15 13 19 19 C 1.37099 * 119.99696 * 180.02562 * 18 16 15 20 20 H 1.07990 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99988 * 179.97438 * 19 18 16 22 22 N 1.31421 * 119.99816 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46781 * 59.99818 * 23 21 19 25 25 H 1.48496 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47050 * 300.00040 * 23 21 19 27 27 N 1.30984 * 106.12502 * 0.22400 * 5 4 3 28 28 O 1.20904 * 111.43939 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99983 * 1 2 3 31 31 H 1.08993 * 109.46827 * 59.99682 * 1 2 3 32 32 H 1.09000 * 109.47607 * 240.00217 * 2 1 3 33 33 H 1.08996 * 109.47459 * 119.99960 * 2 1 3 34 34 H 1.08002 * 128.04455 * 0.04078 * 4 3 2 35 35 H 0.97007 * 119.99655 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.46943 * 179.97438 * 11 9 8 37 37 H 1.08992 * 109.47272 * 300.00091 * 11 9 8 38 38 H 1.08997 * 109.47055 * 60.00308 * 11 9 8 39 39 H 1.09006 * 109.47221 * 65.00430 * 12 9 8 40 40 H 1.09000 * 109.47403 * 184.99900 * 12 9 8 41 41 H 1.09001 * 109.47241 * 60.00524 * 14 13 12 42 42 H 1.09001 * 109.46720 * 179.97438 * 14 13 12 43 43 H 1.08992 * 109.47614 * 300.00021 * 14 13 12 44 44 H 1.08993 * 109.47095 * 309.99743 * 15 13 12 45 45 H 1.09001 * 109.47231 * 70.00131 * 15 13 12 46 46 H 0.96993 * 119.99971 * 359.97438 * 18 16 15 47 47 H 0.96996 * 119.99956 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1826 1.0855 5 6 2.7441 3.4179 0.5354 6 6 3.1778 4.6226 1.2843 7 8 3.1770 4.6157 2.4992 8 7 3.5719 5.7253 0.6170 9 6 3.9998 6.9153 1.3565 10 1 4.5185 6.6110 2.2656 11 6 2.7747 7.7547 1.7247 12 6 4.9436 7.7457 0.4844 13 7 6.0597 6.9045 0.0321 14 6 6.9010 6.4930 1.1638 15 6 6.8559 7.5927 -0.9929 16 6 7.8320 6.6220 -1.6062 17 8 7.8618 5.4704 -1.2264 18 7 8.6726 7.0339 -2.5759 19 6 9.5602 6.1507 -3.1342 20 1 9.5862 5.1252 -2.7967 21 6 10.4265 6.5751 -4.1343 22 7 10.3945 7.8229 -4.5454 23 14 11.6364 5.3721 -4.8945 24 1 10.8918 4.2485 -5.5178 25 1 12.4408 6.0676 -5.9310 26 1 12.5381 4.8436 -3.8395 27 7 2.6915 3.2764 -0.7657 28 8 2.2969 2.1762 -1.0750 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2073 1.9138 2.1272 35 1 3.5722 5.7309 -0.3531 36 1 3.0930 8.6398 2.2754 37 1 2.2561 8.0588 0.8157 38 1 2.1024 7.1631 2.3460 39 1 4.3998 8.1242 -0.3812 40 1 5.3316 8.5831 1.0643 41 1 6.3011 5.9249 1.8749 42 1 7.7192 5.8710 0.8009 43 1 7.3066 7.3771 1.6554 44 1 6.1941 7.9805 -1.7672 45 1 7.4024 8.4173 -0.5354 46 1 8.6489 7.9548 -2.8793 47 1 10.9989 8.1191 -5.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722906994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:31 Heat of formation + Delta-G solvation = -8.235560 kcal Electronic energy + Delta-G solvation = -29260.286662 eV Core-core repulsion = 25060.738418 eV Total energy + Delta-G solvation = -4199.548244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.18605 -39.86623 -38.58835 -37.00949 -35.22906 -34.74281 -34.00039 -33.74321 -31.26271 -31.12546 -30.26670 -28.00241 -26.93106 -25.28981 -24.73671 -24.34499 -22.85787 -22.36658 -20.62803 -20.10634 -19.14119 -17.96661 -17.83549 -17.64040 -16.99181 -16.30518 -16.04014 -15.35089 -15.00443 -14.90323 -14.73984 -14.63138 -14.55120 -14.02103 -13.92885 -13.68367 -13.56733 -13.41347 -13.02776 -12.87791 -12.59662 -12.20821 -12.11641 -12.04528 -11.85572 -11.80625 -11.50744 -11.36814 -11.32518 -11.23640 -10.90676 -10.76350 -10.54497 -10.43423 -10.27634 -10.20470 -9.62613 -9.45765 -9.11095 -8.45417 -7.97355 -7.86708 -6.40738 -3.81408 1.05059 1.53203 2.74727 2.94331 3.17825 3.20695 3.26149 3.30679 3.86115 3.91525 3.96207 4.22928 4.28373 4.62682 4.71224 4.76474 4.83432 4.94134 5.02688 5.09943 5.13519 5.18348 5.26215 5.33632 5.40485 5.40755 5.49916 5.55575 5.57086 5.68750 5.70489 5.72873 5.78065 5.87950 5.94461 5.98673 6.04687 6.28571 6.41286 6.57545 7.23379 7.34275 7.42153 7.56035 7.91556 8.07267 8.11055 8.63100 9.19292 9.55525 10.07746 10.76992 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.002724 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.126292 B =10275.259587 C =12449.628087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.035 4.035 4 C -0.183 4.183 5 C -0.023 4.023 6 C 0.602 3.398 7 O -0.534 6.534 8 N -0.687 5.687 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.162 4.162 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.323 5.323 28 O 0.125 5.875 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 -6.040 10.113 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 C -0.098 4.098 4 C -0.205 4.205 5 C -0.183 4.183 6 C 0.386 3.614 7 O -0.410 6.410 8 N -0.338 5.338 9 C 0.042 3.958 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.023 5.023 28 O 0.048 5.952 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.196 0.804 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.034 0.966 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.526 -6.240 9.883 22.757 hybrid contribution 0.977 0.566 -0.036 1.130 sum -18.548 -5.673 9.847 21.753 Atomic orbital electron populations 1.21808 0.93423 1.02788 1.02914 1.20148 0.96634 0.86171 1.05099 1.24513 1.02521 0.97185 0.85565 1.22389 1.05026 0.91717 1.01374 1.23490 1.06461 0.98140 0.90170 1.16814 0.77350 0.80989 0.86243 1.90767 1.54943 1.82764 1.12530 1.45671 1.64596 1.12354 1.11154 1.21047 0.94480 0.84568 0.95727 0.89104 1.22158 0.97972 0.99993 1.01966 1.22505 0.93033 0.94183 0.98979 1.61562 1.10475 1.39955 1.12003 1.22563 0.98451 0.99551 0.92106 1.21876 0.96149 0.95300 0.95249 1.19724 0.84365 0.89132 0.83867 1.90497 1.72171 1.19318 1.63999 1.41855 1.32195 1.12898 1.33185 1.19635 1.12143 0.94509 1.16463 0.88031 1.25254 0.98719 0.96736 0.97246 1.69606 1.39145 1.15446 1.30221 0.85925 0.79915 0.79805 0.78623 1.19882 1.20982 1.19949 1.74233 1.13084 0.99404 1.15581 1.84799 1.59610 1.17363 1.33434 0.91175 0.92045 0.91961 0.88985 0.88291 0.80408 0.75221 0.91334 0.92175 0.91825 0.90131 0.93222 0.92208 0.88573 0.96622 0.89420 0.93406 0.77528 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.35 16 2 C -0.04 -0.24 6.50 -27.88 -0.18 -0.42 16 3 C -0.03 -0.34 6.73 -35.35 -0.24 -0.58 16 4 C -0.18 -2.07 10.92 -39.07 -0.43 -2.50 16 5 C -0.02 -0.33 7.19 -82.53 -0.59 -0.93 16 6 C 0.60 9.18 7.81 -12.11 -0.09 9.08 16 7 O -0.53 -9.10 16.62 5.37 0.09 -9.01 16 8 N -0.69 -9.51 4.80 -54.60 -0.26 -9.77 16 9 C 0.15 1.79 2.35 -67.93 -0.16 1.63 16 10 H 0.09 1.25 6.23 -51.93 -0.32 0.92 16 11 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 12 C 0.04 0.51 4.52 -3.83 -0.02 0.49 16 13 N -0.52 -8.49 4.22 -244.37 -1.03 -9.52 16 14 C 0.02 0.36 8.96 60.07 0.54 0.90 16 15 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 16 C 0.44 10.50 7.48 -10.98 -0.08 10.42 16 17 O -0.58 -15.64 13.91 5.54 0.08 -15.56 16 18 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 N -0.32 -4.68 11.84 33.29 0.39 -4.28 16 28 O 0.12 1.54 11.18 17.24 0.19 1.73 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.41 5.77 8.36 -40.82 -0.34 5.43 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 40 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 42 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -33.80 398.03 -6.74 -40.54 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.04 Total: 12.71 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.80 Total: 9.29 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.23 Total: -61.95 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.36 Total: -22.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.80 -6.74 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722906994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.307 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds