Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 C 1.35316 * 126.66111 * 90.00133 * 3 2 1 5 5 C 1.42278 * 103.91726 * 179.77551 * 4 3 2 6 6 C 1.48329 * 126.93406 * 180.24699 * 5 4 3 7 7 O 1.21498 * 120.00414 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00341 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46620 * 34.99843 * 9 8 6 11 11 C 1.52998 * 109.46867 * 274.99669 * 9 8 6 12 12 C 1.52997 * 109.47052 * 154.99543 * 9 8 6 13 13 N 1.46901 * 109.47623 * 305.00246 * 12 9 8 14 14 C 1.46901 * 110.99422 * 293.95242 * 13 12 9 15 15 C 1.46900 * 111.00005 * 170.00210 * 13 12 9 16 16 C 1.50704 * 109.46742 * 189.99912 * 15 13 12 17 17 O 1.21297 * 119.99904 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99755 * 180.02562 * 16 15 13 19 19 C 1.37099 * 119.99696 * 180.02562 * 18 16 15 20 20 H 1.07990 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99988 * 179.97438 * 19 18 16 22 22 N 1.31421 * 119.99816 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46781 * 59.99818 * 23 21 19 25 25 H 1.48496 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47050 * 300.00040 * 23 21 19 27 27 N 1.30984 * 106.12502 * 0.22400 * 5 4 3 28 28 O 1.20904 * 111.43939 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99983 * 1 2 3 31 31 H 1.08993 * 109.46827 * 59.99682 * 1 2 3 32 32 H 1.09000 * 109.47607 * 240.00217 * 2 1 3 33 33 H 1.08996 * 109.47459 * 119.99960 * 2 1 3 34 34 H 1.08002 * 128.04455 * 0.04078 * 4 3 2 35 35 H 0.97007 * 119.99655 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.46943 * 179.97438 * 11 9 8 37 37 H 1.08992 * 109.47272 * 300.00091 * 11 9 8 38 38 H 1.08997 * 109.47055 * 60.00308 * 11 9 8 39 39 H 1.09006 * 109.47221 * 65.00430 * 12 9 8 40 40 H 1.09000 * 109.47403 * 184.99900 * 12 9 8 41 41 H 1.09001 * 109.47241 * 60.00524 * 14 13 12 42 42 H 1.09001 * 109.46720 * 179.97438 * 14 13 12 43 43 H 1.08992 * 109.47614 * 300.00021 * 14 13 12 44 44 H 1.08993 * 109.47095 * 309.99743 * 15 13 12 45 45 H 1.09001 * 109.47231 * 70.00131 * 15 13 12 46 46 H 0.96993 * 119.99971 * 359.97438 * 18 16 15 47 47 H 0.96996 * 119.99956 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1826 1.0855 5 6 2.7441 3.4179 0.5354 6 6 3.1778 4.6226 1.2843 7 8 3.1770 4.6157 2.4992 8 7 3.5719 5.7253 0.6170 9 6 3.9998 6.9153 1.3565 10 1 4.5185 6.6110 2.2656 11 6 2.7747 7.7547 1.7247 12 6 4.9436 7.7457 0.4844 13 7 6.0597 6.9045 0.0321 14 6 6.9010 6.4930 1.1638 15 6 6.8559 7.5927 -0.9929 16 6 7.8320 6.6220 -1.6062 17 8 7.8618 5.4704 -1.2264 18 7 8.6726 7.0339 -2.5759 19 6 9.5602 6.1507 -3.1342 20 1 9.5862 5.1252 -2.7967 21 6 10.4265 6.5751 -4.1343 22 7 10.3945 7.8229 -4.5454 23 14 11.6364 5.3721 -4.8945 24 1 10.8918 4.2485 -5.5178 25 1 12.4408 6.0676 -5.9310 26 1 12.5381 4.8436 -3.8395 27 7 2.6915 3.2764 -0.7657 28 8 2.2969 2.1762 -1.0750 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2073 1.9138 2.1272 35 1 3.5722 5.7309 -0.3531 36 1 3.0930 8.6398 2.2754 37 1 2.2561 8.0588 0.8157 38 1 2.1024 7.1631 2.3460 39 1 4.3998 8.1242 -0.3812 40 1 5.3316 8.5831 1.0643 41 1 6.3011 5.9249 1.8749 42 1 7.7192 5.8710 0.8009 43 1 7.3066 7.3771 1.6554 44 1 6.1941 7.9805 -1.7672 45 1 7.4024 8.4173 -0.5354 46 1 8.6489 7.9548 -2.8793 47 1 10.9989 8.1191 -5.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722906994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = -33.668625 kcal Electronic energy + Delta-G solvation = -29261.389523 eV Core-core repulsion = 25060.738418 eV Total energy + Delta-G solvation = -4200.651105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.16562 -41.02707 -40.29116 -38.39377 -36.21307 -35.85172 -35.59232 -34.94639 -33.27994 -32.13304 -31.05486 -29.52325 -28.05772 -26.72578 -26.18454 -24.97285 -24.03048 -23.43094 -21.65737 -21.15756 -20.97957 -19.85840 -18.93446 -18.56362 -18.09184 -17.76233 -17.27123 -16.71018 -16.57880 -16.25155 -15.94418 -15.69080 -15.58399 -15.41348 -15.13886 -15.07109 -14.81011 -14.37454 -14.19543 -13.68903 -13.61565 -13.50417 -13.39077 -13.15839 -12.91817 -12.89981 -12.81965 -12.70315 -12.48347 -12.42481 -12.40218 -12.13726 -11.86025 -11.80535 -11.56271 -11.46295 -11.44391 -10.47532 -10.31462 -10.17349 -10.00074 -9.24122 -8.46835 -5.95155 0.04328 0.64541 1.38296 1.39930 1.50737 1.81161 2.02250 2.06352 2.09307 2.27385 2.70069 2.90928 3.20011 3.39823 3.48880 3.70557 3.90587 4.07746 4.10931 4.16739 4.18420 4.30268 4.35190 4.37414 4.44692 4.49922 4.50562 4.54611 4.66044 4.71607 4.71859 4.75740 4.95425 4.97136 5.06642 5.12992 5.14107 5.24159 5.37495 5.39786 5.40187 5.84758 6.03461 6.15234 6.29794 6.61229 6.90307 7.04493 7.13366 7.57151 8.13903 8.70320 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.002724 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.126292 B =10275.259587 C =12449.628087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.017 4.017 4 C -0.196 4.196 5 C -0.048 4.048 6 C 0.597 3.403 7 O -0.560 6.560 8 N -0.684 5.684 9 C 0.145 3.855 10 H 0.074 0.926 11 C -0.152 4.152 12 C 0.047 3.953 13 N -0.535 5.535 14 C 0.031 3.969 15 C 0.059 3.941 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.273 1.273 27 N -0.350 5.350 28 O 0.120 5.880 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.194 0.806 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 -5.724 10.022 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.080 4.080 4 C -0.218 4.218 5 C -0.206 4.206 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.334 5.334 9 C 0.040 3.960 10 H 0.092 0.908 11 C -0.211 4.211 12 C -0.081 4.081 13 N -0.260 5.260 14 C -0.117 4.117 15 C -0.072 4.072 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 N -0.050 5.050 28 O 0.044 5.956 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.211 0.789 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.527 -5.878 9.784 23.487 hybrid contribution 1.221 0.410 0.027 1.288 sum -19.306 -5.468 9.812 22.336 Atomic orbital electron populations 1.21809 0.92473 1.04012 1.02408 1.20445 0.97254 0.83452 1.06796 1.25273 1.00319 0.98204 0.84206 1.22662 1.05570 0.90999 1.02607 1.23645 1.07484 0.98894 0.90554 1.17028 0.77186 0.81570 0.86098 1.90734 1.56338 1.83324 1.13441 1.45776 1.63867 1.12628 1.11108 1.21182 0.95555 0.84340 0.94884 0.90818 1.22078 0.96476 0.99987 1.02549 1.22597 0.91384 0.94015 1.00113 1.61464 1.11012 1.41649 1.11841 1.22342 0.97329 0.99751 0.92278 1.21748 0.95479 0.93819 0.96151 1.20843 0.84166 0.89633 0.82616 1.90481 1.73205 1.21646 1.64881 1.41918 1.32594 1.12763 1.33940 1.19569 1.14239 0.94182 1.18125 0.90641 1.26002 0.99750 0.98460 0.97030 1.69662 1.39626 1.16419 1.30385 0.85029 0.77779 0.77819 0.77959 1.19820 1.19340 1.19833 1.74215 1.14388 1.00565 1.15844 1.84753 1.59312 1.17139 1.34403 0.89070 0.92338 0.92737 0.87655 0.86180 0.78896 0.75377 0.89093 0.90919 0.93235 0.88096 0.90730 0.92115 0.92874 0.94530 0.86769 0.91096 0.76992 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.40 16 2 C -0.04 -0.38 6.50 29.85 0.19 -0.19 16 3 C -0.02 -0.32 6.73 25.01 0.17 -0.15 16 4 C -0.20 -4.43 10.92 22.60 0.25 -4.19 16 5 C -0.05 -1.39 7.19 42.96 0.31 -1.09 16 6 C 0.60 18.68 7.81 86.93 0.68 19.36 16 7 O -0.56 -19.60 16.62 -3.71 -0.06 -19.66 16 8 N -0.68 -18.95 4.80 -444.94 -2.14 -21.08 16 9 C 0.14 3.36 2.35 44.99 0.11 3.47 16 10 H 0.07 1.99 6.23 -2.38 -0.01 1.98 16 11 C -0.15 -2.68 9.48 71.98 0.68 -1.99 16 12 C 0.05 1.02 4.52 86.30 0.39 1.41 16 13 N -0.54 -16.98 4.22 -927.05 -3.92 -20.89 16 14 C 0.03 1.06 8.96 127.69 1.14 2.20 16 15 C 0.06 1.99 5.45 85.56 0.47 2.45 16 16 C 0.44 21.08 7.48 87.66 0.66 21.73 16 17 O -0.62 -34.66 13.91 -3.08 -0.04 -34.71 16 18 N -0.57 -29.67 5.29 -306.98 -1.62 -31.30 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.65 7.16 -2.92 -0.02 4.63 16 21 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 22 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 23 Si 0.99 43.54 29.55 68.60 2.03 45.56 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 N -0.35 -10.39 11.84 -49.52 -0.59 -10.98 16 28 O 0.12 3.00 11.18 71.88 0.80 3.80 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.41 11.54 8.36 -92.70 -0.78 10.77 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.84 7.93 -2.38 -0.02 1.82 16 40 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 41 H 0.06 2.01 6.58 -2.39 -0.02 1.99 16 42 H 0.05 2.27 5.82 -2.39 -0.01 2.26 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.11 3.28 7.93 -2.39 -0.02 3.26 16 45 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 46 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -76.22 398.03 1.29 -74.94 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.50 Total: 39.80 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 7.03 Total: 24.14 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -7.98 Total: -133.88 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: 0.70 Total: -50.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.22 1.29 -74.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722906994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.271 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds