Wall clock time and date at job start Tue Mar 31 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47169 * 2 1 4 4 C 1.35316 * 126.66445 * 90.28852 * 3 2 1 5 5 C 1.42273 * 103.92220 * 180.09149 * 4 3 2 6 6 C 1.48328 * 126.93442 * 179.90969 * 5 4 3 7 7 O 1.21490 * 120.00635 * 359.70720 * 6 5 4 8 8 N 1.34782 * 119.99551 * 179.70667 * 6 5 4 9 9 C 1.46499 * 120.00273 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47658 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47103 * 64.99700 * 10 9 8 12 12 C 1.52997 * 109.47482 * 184.99947 * 10 9 8 13 13 N 1.46902 * 109.47181 * 305.00169 * 10 9 8 14 14 C 1.46900 * 110.99736 * 298.95354 * 13 10 9 15 15 C 1.46895 * 111.00186 * 174.99766 * 13 10 9 16 16 C 1.50703 * 109.46874 * 189.99595 * 15 13 10 17 17 O 1.21295 * 120.00359 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99693 * 179.97438 * 16 15 13 19 19 C 1.37102 * 120.00091 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99374 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00514 * 180.02562 * 19 18 16 22 22 N 1.31420 * 119.99495 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47266 * 89.99805 * 23 21 19 25 25 H 1.48498 * 109.47322 * 209.99960 * 23 21 19 26 26 H 1.48498 * 109.46858 * 329.99735 * 23 21 19 27 27 N 1.30988 * 106.12162 * 359.64438 * 5 4 3 28 28 O 1.20910 * 111.44026 * 0.22933 * 27 5 4 29 29 H 1.08999 * 109.46969 * 59.99972 * 1 2 3 30 30 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46918 * 299.99401 * 1 2 3 32 32 H 1.09006 * 109.47440 * 240.00433 * 2 1 3 33 33 H 1.09003 * 109.47596 * 120.00390 * 2 1 3 34 34 H 1.08005 * 128.03724 * 359.96063 * 4 3 2 35 35 H 0.97002 * 119.99790 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46952 * 59.99319 * 9 8 6 37 37 H 1.09004 * 109.46722 * 300.00399 * 9 8 6 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47292 * 59.99623 * 14 13 10 42 42 H 1.09002 * 109.47267 * 179.97438 * 14 13 10 43 43 H 1.09000 * 109.47210 * 300.00139 * 14 13 10 44 44 H 1.08999 * 109.47066 * 309.99575 * 15 13 10 45 45 H 1.09001 * 109.47511 * 70.00176 * 15 13 10 46 46 H 0.97002 * 120.00164 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99441 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0854 5 6 2.7395 3.4195 0.5354 6 6 3.1672 4.6263 1.2843 7 8 3.1651 4.6199 2.4992 8 7 3.5583 5.7301 0.6169 9 6 3.9813 6.9219 1.3564 10 6 4.3707 8.0235 0.3688 11 1 3.4913 8.3320 -0.1967 12 6 4.9297 9.2229 1.1368 13 7 5.3929 7.5140 -0.5551 14 6 6.6046 7.1110 0.1710 15 6 5.7061 8.5056 -1.5926 16 6 6.5648 7.8678 -2.6542 17 8 6.8840 6.7017 -2.5564 18 7 6.9771 8.5928 -3.7128 19 6 7.7579 8.0125 -4.6789 20 1 8.0427 6.9744 -4.5913 21 6 8.1835 8.7600 -5.7701 22 7 7.8372 10.0233 -5.8763 23 14 9.2478 7.9695 -7.0860 24 1 8.3798 7.3854 -8.1398 25 1 10.1348 8.9968 -7.6884 26 1 10.0749 6.8977 -6.4757 27 7 2.6894 3.2771 -0.7657 28 8 2.2995 2.1752 -1.0750 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2162 1.9106 2.1272 35 1 3.5603 5.7351 -0.3531 36 1 4.8384 6.6755 1.9830 37 1 3.1609 7.2703 1.9839 38 1 5.8091 8.9144 1.7022 39 1 4.1712 9.6009 1.8222 40 1 5.2076 10.0076 0.4330 41 1 6.3562 6.3257 0.8849 42 1 7.3448 6.7372 -0.5366 43 1 7.0120 7.9704 0.7034 44 1 4.7807 8.8661 -2.0418 45 1 6.2430 9.3422 -1.1454 46 1 6.7216 9.5253 -3.7913 47 1 8.1340 10.5451 -6.6382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725186967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:19 Heat of formation + Delta-G solvation = -5.236143 kcal Electronic energy + Delta-G solvation = -29144.040613 eV Core-core repulsion = 24944.622433 eV Total energy + Delta-G solvation = -4199.418180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.23087 -39.86781 -38.83284 -37.31269 -35.25874 -34.46292 -33.99917 -33.74167 -31.27740 -30.99071 -30.37797 -27.97735 -26.96236 -25.41863 -24.67655 -24.23335 -23.58876 -22.50963 -20.28749 -19.75217 -19.07427 -18.00214 -17.83535 -17.68641 -16.90655 -16.56325 -16.11913 -15.58152 -14.98346 -14.95340 -14.80807 -14.71749 -14.57198 -14.08280 -13.94179 -13.71719 -13.52643 -13.22142 -13.04983 -13.02713 -12.82747 -12.29117 -12.22787 -11.90939 -11.83452 -11.77868 -11.45593 -11.35480 -11.23291 -11.22082 -10.93897 -10.77313 -10.60067 -10.39300 -10.37006 -10.21518 -9.67076 -9.47103 -9.12830 -8.47639 -7.97944 -7.86654 -6.41535 -3.82130 1.00670 1.48040 2.70967 2.92028 3.10589 3.18030 3.26610 3.32340 3.83115 3.90256 3.95349 4.21584 4.27286 4.59629 4.64628 4.73676 4.79441 4.89367 4.95108 5.10400 5.10726 5.18882 5.25315 5.29374 5.37861 5.41235 5.48049 5.53856 5.54319 5.65157 5.70132 5.75417 5.75775 5.88001 5.89584 5.97815 6.13839 6.27550 6.32588 6.55917 7.21100 7.32710 7.39633 7.55604 7.88183 8.05514 8.06764 8.62127 9.18672 9.54787 10.06730 10.76232 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.002566 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.639743 B =10910.192900 C =13061.746910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.035 4.035 4 C -0.183 4.183 5 C -0.026 4.026 6 C 0.597 3.403 7 O -0.535 6.535 8 N -0.696 5.696 9 C 0.130 3.870 10 C 0.063 3.937 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.512 5.512 14 C 0.016 3.984 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 N -0.321 5.321 28 O 0.126 5.874 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.419 0.581 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.021 0.979 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.065 -11.156 14.351 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.205 4.205 5 C -0.186 4.186 6 C 0.381 3.619 7 O -0.411 6.411 8 N -0.347 5.347 9 C 0.006 3.994 10 C -0.047 4.047 11 H 0.108 0.892 12 C -0.245 4.245 13 N -0.235 5.235 14 C -0.131 4.131 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 N -0.020 5.020 28 O 0.049 5.951 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.196 0.804 35 H 0.257 0.743 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.039 0.961 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.658 -11.317 13.903 22.537 hybrid contribution 0.658 0.836 -0.094 1.068 sum -13.001 -10.481 13.810 21.670 Atomic orbital electron populations 1.21811 0.93380 1.02817 1.02980 1.20150 0.96697 0.86132 1.05052 1.24535 1.02461 0.97262 0.85574 1.22386 1.05098 0.91651 1.01375 1.23485 1.06866 0.98018 0.90202 1.16859 0.77617 0.81202 0.86229 1.90772 1.54977 1.82831 1.12544 1.45741 1.64757 1.12306 1.11930 1.21492 1.00007 0.84002 0.93879 1.22052 0.96478 0.92770 0.93350 0.89214 1.22400 1.02090 0.98693 1.01299 1.61812 1.10847 1.38772 1.12111 1.22602 0.92891 0.98861 0.98783 1.21875 1.00182 0.93302 0.93263 1.19733 0.85378 0.87695 0.84309 1.90497 1.60602 1.16767 1.78145 1.41864 1.45785 1.12863 1.19618 1.19685 1.25791 0.97706 0.99492 0.87955 1.25255 0.98487 0.95484 0.98768 1.69617 1.46201 1.07163 1.31406 0.85863 0.79516 0.78574 0.80376 1.20390 1.20966 1.19457 1.74294 1.13022 0.99171 1.15500 1.84819 1.59582 1.17258 1.33411 0.91897 0.91157 0.92035 0.88987 0.88311 0.80384 0.74328 0.90943 0.90788 0.91754 0.91829 0.91530 0.92216 0.88569 0.96058 0.89444 0.93128 0.77539 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.32 16 2 C -0.04 -0.22 6.50 -27.88 -0.18 -0.40 16 3 C -0.04 -0.33 6.73 -35.35 -0.24 -0.56 16 4 C -0.18 -1.96 10.92 -39.07 -0.43 -2.39 16 5 C -0.03 -0.37 7.19 -82.53 -0.59 -0.96 16 6 C 0.60 8.90 7.85 -12.11 -0.10 8.80 16 7 O -0.54 -8.92 16.95 5.37 0.09 -8.83 16 8 N -0.70 -9.68 5.39 -61.10 -0.33 -10.01 16 9 C 0.13 1.59 4.68 -4.05 -0.02 1.57 16 10 C 0.06 0.75 2.50 -67.72 -0.17 0.58 16 11 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 12 C -0.19 -1.91 8.50 37.16 0.32 -1.60 16 13 N -0.51 -8.06 3.93 -236.34 -0.93 -8.99 16 14 C 0.02 0.26 8.46 60.06 0.51 0.77 16 15 C 0.04 0.77 4.89 -4.98 -0.02 0.75 16 16 C 0.44 10.29 7.47 -10.98 -0.08 10.21 16 17 O -0.58 -15.32 13.91 5.54 0.08 -15.24 16 18 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 N -0.32 -4.59 11.84 33.30 0.39 -4.20 16 28 O 0.13 1.53 11.18 17.25 0.19 1.72 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.42 6.20 7.90 -40.82 -0.32 5.88 16 36 H 0.07 0.93 6.70 -51.93 -0.35 0.58 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.68 6.39 -51.93 -0.33 0.35 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.71 6.75 -51.93 -0.35 0.36 16 41 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 42 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 43 H 0.02 0.31 6.28 -51.93 -0.33 -0.02 16 44 H 0.09 1.36 8.00 -51.93 -0.42 0.94 16 45 H 0.05 0.80 6.94 -51.93 -0.36 0.44 16 46 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -33.21 390.84 -6.57 -39.78 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -6.72 Total: 13.26 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -0.88 Total: 8.54 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.20 Total: -61.23 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.36 Total: -22.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.21 -6.57 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725186967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.545 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds