Wall clock time and date at job start Tue Mar 31 2020 21:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.43312 * 2 1 4 4 O 1.21286 * 119.99998 * 120.70220 * 3 2 1 5 5 N 1.34775 * 120.00136 * 300.70274 * 3 2 1 6 6 C 1.46497 * 120.00126 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84935 * 25.32833 * 6 5 3 8 8 C 1.53786 * 113.61643 * 156.52505 * 6 5 3 9 9 C 1.53783 * 87.08050 * 140.06125 * 8 6 5 10 10 H 1.08998 * 113.60991 * 89.11784 * 9 8 6 11 11 N 1.46895 * 113.61424 * 219.93603 * 9 8 6 12 12 C 1.46904 * 110.99820 * 205.00295 * 11 9 8 13 13 C 1.50698 * 109.46865 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00475 * 0.02562 * 13 12 11 15 15 N 1.34787 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99528 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00346 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99316 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00536 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99594 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47028 * 90.00530 * 20 18 16 22 22 H 1.48503 * 109.47355 * 210.00255 * 20 18 16 23 23 H 1.48499 * 109.47315 * 330.00300 * 20 18 16 24 24 C 1.53781 * 113.61305 * 254.13352 * 6 5 3 25 25 C 1.54632 * 110.48500 * 122.54136 * 2 1 3 26 26 C 1.54829 * 101.60216 * 143.56940 * 25 2 1 27 27 N 1.46767 * 105.49613 * 334.56471 * 26 25 2 28 28 C 1.34416 * 111.29746 * 17.03958 * 27 26 25 29 29 O 1.21282 * 124.94146 * 179.56086 * 28 27 26 30 30 H 1.08997 * 109.47520 * 59.29764 * 1 2 3 31 31 H 1.09004 * 109.47220 * 179.30533 * 1 2 3 32 32 H 1.08999 * 109.47195 * 299.29827 * 1 2 3 33 33 H 0.97006 * 119.99816 * 359.97438 * 5 3 2 34 34 H 1.08992 * 113.61675 * 254.61383 * 8 6 5 35 35 H 1.09000 * 113.60973 * 25.51671 * 8 6 5 36 36 H 1.00900 * 111.00231 * 328.95440 * 11 9 8 37 37 H 1.09003 * 109.47318 * 299.99947 * 12 11 9 38 38 H 1.08996 * 109.47314 * 60.00289 * 12 11 9 39 39 H 0.96992 * 120.00014 * 0.02562 * 15 13 12 40 40 H 0.96998 * 120.00252 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.61567 * 334.48111 * 24 6 5 42 42 H 1.08998 * 113.61196 * 105.38466 * 24 6 5 43 43 H 1.09001 * 110.96608 * 261.72908 * 25 2 1 44 44 H 1.09003 * 110.97046 * 25.49062 * 25 2 1 45 45 H 1.09003 * 110.22003 * 215.56664 * 26 25 2 46 46 H 1.08998 * 110.32846 * 93.62037 * 26 25 2 47 47 H 0.96995 * 124.35041 * 197.01062 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7704 1.7932 0.9031 5 7 1.7330 2.2517 -1.0036 6 6 2.2448 3.6243 -1.0039 7 1 3.1735 3.7299 -0.4429 8 6 2.2936 4.2634 -2.4018 9 6 1.8075 5.5629 -1.7386 10 1 2.6165 6.1984 -1.3785 11 7 0.8180 6.2972 -2.5383 12 6 0.8280 7.7277 -2.2041 13 6 -0.1969 8.4466 -3.0429 14 8 -0.8699 7.8282 -3.8402 15 7 -0.3665 9.7768 -2.9062 16 6 -1.2993 10.4307 -3.6689 17 1 -1.8986 9.8801 -4.3789 18 6 -1.4738 11.8021 -3.5284 19 7 -0.7443 12.4722 -2.6650 20 14 -2.7443 12.6933 -4.5682 21 1 -4.0470 12.7054 -3.8552 22 1 -2.2977 14.0893 -4.8068 23 1 -2.8984 11.9937 -5.8689 24 6 1.1840 4.6775 -0.6429 25 6 2.0712 -0.7792 1.2211 26 6 3.3232 -1.4656 0.6225 27 7 3.0582 -1.5786 -0.8166 28 6 2.0595 -0.7623 -1.1946 29 8 1.6436 -0.6525 -2.3286 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3634 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 1.1620 1.9468 -1.7261 34 1 3.2998 4.3339 -2.8148 35 1 1.5763 3.8360 -3.1025 36 1 0.9734 6.1553 -3.5251 37 1 0.5888 7.8559 -1.1484 38 1 1.8163 8.1410 -2.4055 39 1 0.1714 10.2713 -2.2683 40 1 -0.8664 13.4294 -2.5666 41 1 0.1639 4.3631 -0.8636 42 1 1.2950 5.0820 0.3631 43 1 2.3448 -0.0990 2.0277 44 1 1.3470 -1.5180 1.5646 45 1 3.4561 -2.4550 1.0604 46 1 4.2093 -0.8549 0.7961 47 1 3.5419 -2.1665 -1.4176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731486522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:32 Heat of formation + Delta-G solvation = -115.109919 kcal Electronic energy + Delta-G solvation = -28789.753298 eV Core-core repulsion = 24585.570634 eV Total energy + Delta-G solvation = -4204.182664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32561 -40.74166 -40.05996 -39.23890 -37.41236 -36.13992 -35.50047 -34.46964 -33.38622 -33.11560 -29.71765 -28.48802 -26.73327 -26.68905 -26.09693 -24.64642 -22.88921 -22.46671 -21.28923 -20.98464 -20.19983 -19.87813 -18.60107 -18.39007 -17.96190 -17.35435 -16.87146 -16.49702 -16.44118 -16.33536 -16.18894 -15.77623 -15.53538 -15.21305 -15.01354 -14.91592 -14.71818 -14.39903 -14.22321 -13.66206 -13.51624 -13.44203 -13.40915 -13.24654 -13.24052 -13.11643 -12.87752 -12.43276 -12.38688 -12.22862 -12.15127 -12.13103 -11.95990 -11.56529 -11.50695 -11.15264 -10.81783 -10.34382 -10.16369 -10.09331 -10.02009 -9.33024 -8.46926 -5.95784 1.14158 1.37959 1.41662 1.49246 1.54509 2.04804 2.08759 2.29280 2.35450 2.97383 3.13369 3.20366 3.33025 3.46575 3.49168 3.61591 3.65756 3.86891 3.91657 4.01140 4.06358 4.30440 4.38164 4.45450 4.52381 4.59866 4.65170 4.69442 4.74688 4.76151 4.81827 4.96265 5.01277 5.04732 5.09032 5.12296 5.15510 5.40660 5.49680 5.68672 5.88971 5.92213 6.14094 6.39051 6.40640 6.59849 7.02648 7.10220 7.12191 7.55856 8.11119 8.70433 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.001708 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.502599 B =16387.900522 C =16622.471093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.533 3.467 4 O -0.558 6.558 5 N -0.705 5.705 6 C 0.127 3.873 7 H 0.113 0.887 8 C -0.137 4.137 9 C 0.061 3.939 10 H 0.091 0.909 11 N -0.668 5.668 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.134 4.134 25 C -0.114 4.114 26 C 0.097 3.903 27 N -0.717 5.717 28 C 0.525 3.475 29 O -0.557 6.557 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.347 0.653 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -28.427 10.951 32.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 C 0.318 3.682 4 O -0.437 6.437 5 N -0.354 5.354 6 C 0.022 3.978 7 H 0.131 0.869 8 C -0.176 4.176 9 C -0.049 4.049 10 H 0.109 0.891 11 N -0.300 5.300 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.510 6.510 15 N -0.211 5.211 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.174 4.174 25 C -0.152 4.152 26 C -0.026 4.026 27 N -0.372 5.372 28 C 0.309 3.691 29 O -0.436 6.436 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.166 0.834 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.092 0.908 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 10.502 -28.368 11.013 32.192 hybrid contribution 0.350 0.981 -1.280 1.650 sum 10.852 -27.387 9.733 31.025 Atomic orbital electron populations 1.21728 0.88570 1.04693 1.03731 1.21698 1.00447 0.92612 0.97922 1.20128 0.79648 0.86748 0.81631 1.90679 1.38404 1.77870 1.36697 1.46016 1.51518 1.12308 1.25600 1.22324 0.98142 0.79382 0.97970 0.86879 1.23540 1.02937 0.94886 0.96235 1.22960 0.93100 0.93274 0.95581 0.89088 1.60176 1.51532 1.07533 1.10796 1.21603 0.96513 0.88867 0.99820 1.20906 0.87553 0.82435 0.86642 1.90488 1.51640 1.67066 1.41827 1.41941 1.35284 1.06732 1.37094 1.19672 1.16008 0.91487 1.19263 0.90337 1.26051 1.00088 0.96724 0.98457 1.69668 1.40922 1.09596 1.35899 0.84920 0.77828 0.77369 0.78160 1.19674 1.19471 1.19781 1.23568 0.99296 0.95677 0.98841 1.22856 0.97469 0.99454 0.95400 1.22399 0.98191 1.03577 0.78477 1.46206 1.35798 1.42941 1.12233 1.20558 0.80064 0.80002 0.88468 1.90766 1.62523 1.67601 1.22686 0.91980 0.89430 0.89871 0.75358 0.89232 0.88946 0.83353 0.88067 0.91307 0.76960 0.91284 0.89959 0.91068 0.87890 0.86511 0.86309 0.90834 0.73819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.31 71.98 0.60 -1.01 16 2 C -0.12 -1.76 0.74 -52.93 -0.04 -1.80 16 3 C 0.53 10.75 6.55 87.66 0.57 11.33 16 4 O -0.56 -13.86 15.08 -3.05 -0.05 -13.91 16 5 N -0.70 -13.95 5.22 -440.03 -2.30 -16.25 16 6 C 0.13 2.54 4.21 45.52 0.19 2.73 16 7 H 0.11 2.34 7.50 -2.39 -0.02 2.32 16 8 C -0.14 -2.66 7.40 31.12 0.23 -2.43 16 9 C 0.06 1.40 4.14 45.54 0.19 1.59 16 10 H 0.09 1.85 7.87 -2.39 -0.02 1.83 16 11 N -0.67 -20.85 6.19 -492.38 -3.05 -23.90 16 12 C 0.06 2.21 6.01 85.56 0.51 2.73 16 13 C 0.44 21.03 7.82 87.65 0.69 21.71 16 14 O -0.62 -34.97 15.78 -3.06 -0.05 -35.02 16 15 N -0.57 -29.76 5.29 -306.98 -1.62 -31.38 16 16 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 17 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 19 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 20 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C -0.13 -3.02 7.70 31.21 0.24 -2.78 16 25 C -0.11 -0.99 6.06 31.77 0.19 -0.80 16 26 C 0.10 0.64 7.79 86.95 0.68 1.31 16 27 N -0.72 -7.79 6.24 -459.20 -2.87 -10.65 16 28 C 0.52 9.16 7.13 87.90 0.63 9.79 16 29 O -0.56 -13.81 17.83 -3.04 -0.05 -13.86 16 30 H 0.06 0.92 7.59 -2.39 -0.02 0.90 16 31 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.41 7.92 8.11 -92.70 -0.75 7.17 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.35 11.31 8.24 -89.69 -0.74 10.57 16 37 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 39 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 40 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.10 1.13 6.94 -2.39 -0.02 1.11 16 44 H 0.12 0.43 7.91 -2.39 -0.02 0.41 16 45 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.42 3.26 8.96 -92.71 -0.83 2.43 16 Total: -1.00 -76.22 392.47 -3.72 -79.94 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -2.01 Total: 45.71 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 5.96 Total: 23.69 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -9.55 Total: -131.87 kcal Atomic # 8 Polarization: -62.64 SS G_CDS: -0.15 Total: -62.79 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.22 -3.72 -79.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731486522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.170 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds