Wall clock time and date at job start Tue Mar 31 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 110.43629 * 2 1 4 4 O 1.21270 * 120.00010 * 239.29847 * 3 2 1 5 5 N 1.34775 * 119.99598 * 59.29763 * 3 2 1 6 6 C 1.46506 * 119.99893 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84852 * 334.66886 * 6 5 3 8 8 C 1.53781 * 113.61361 * 105.86287 * 6 5 3 9 9 C 1.53947 * 87.01846 * 139.95459 * 8 6 5 10 10 H 1.09002 * 113.61589 * 89.20053 * 9 8 6 11 11 N 1.46902 * 113.66788 * 220.06551 * 9 8 6 12 12 C 1.46903 * 111.00413 * 252.56228 * 11 9 8 13 13 C 1.50699 * 109.47344 * 179.97438 * 12 11 9 14 14 O 1.21295 * 119.99879 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99779 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99702 * 179.97438 * 15 13 12 17 17 H 1.08010 * 120.00038 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99982 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46790 * 60.00357 * 20 18 16 22 22 H 1.48495 * 109.47135 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47329 * 300.00510 * 20 18 16 24 24 C 1.53773 * 113.61686 * 203.47125 * 6 5 3 25 25 C 1.54628 * 110.48936 * 237.45866 * 2 1 3 26 26 C 1.54478 * 101.76630 * 216.39500 * 25 2 1 27 27 N 1.46764 * 105.47428 * 25.41214 * 26 25 2 28 28 C 1.34737 * 111.35275 * 343.02037 * 27 26 25 29 29 O 1.21280 * 125.12533 * 180.38569 * 28 27 26 30 30 H 1.08997 * 109.46896 * 60.70095 * 1 2 3 31 31 H 1.08994 * 109.47202 * 180.70236 * 1 2 3 32 32 H 1.09002 * 109.46961 * 300.70099 * 1 2 3 33 33 H 0.97005 * 120.00580 * 0.02562 * 5 3 2 34 34 H 1.09005 * 113.61233 * 254.53068 * 8 6 5 35 35 H 1.08999 * 113.61553 * 25.43257 * 8 6 5 36 36 H 1.00905 * 111.00085 * 16.51446 * 11 9 8 37 37 H 1.09003 * 109.46756 * 299.99951 * 12 11 9 38 38 H 1.08996 * 109.46906 * 59.99588 * 12 11 9 39 39 H 0.96993 * 119.99812 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00424 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.61464 * 334.56586 * 24 6 5 42 42 H 1.09000 * 113.61487 * 105.38668 * 24 6 5 43 43 H 1.09000 * 110.96569 * 334.51460 * 25 2 1 44 44 H 1.08996 * 110.96919 * 98.23487 * 25 2 1 45 45 H 1.08997 * 110.24723 * 144.41513 * 26 25 2 46 46 H 1.09005 * 110.24183 * 266.41647 * 26 25 2 47 47 H 0.97003 * 124.34743 * 162.97568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7703 1.7932 -0.9030 5 7 1.7330 2.2517 1.0036 6 6 2.2440 3.6247 1.0034 7 1 3.1723 3.7307 0.4419 8 6 1.1823 4.6771 0.6427 9 6 1.8037 5.5624 1.7382 10 1 2.6112 6.2002 1.3784 11 7 0.8123 6.2941 2.5380 12 6 0.8186 7.7247 2.2043 13 6 -0.2092 8.4406 3.0423 14 8 -0.8812 7.8200 3.8388 15 7 -0.3816 9.7704 2.9066 16 6 -1.3169 10.4216 3.6686 17 1 -1.9154 9.8690 4.3779 18 6 -1.4943 11.7926 3.5291 19 7 -0.7659 12.4650 2.6665 20 14 -2.7693 12.6798 4.5668 21 1 -2.4455 12.5044 6.0055 22 1 -2.7623 14.1260 4.2300 23 1 -4.1140 12.1139 4.2896 24 6 2.2931 4.2640 2.4011 25 6 2.0712 -0.7791 -1.2211 26 6 3.3218 -1.4651 -0.6279 27 7 3.0601 -1.5793 0.8117 28 6 2.0594 -0.7623 1.1947 29 8 1.6437 -0.6523 2.3287 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8837 33 1 1.1620 1.9469 1.7262 34 1 1.2935 5.0826 -0.3630 35 1 0.1624 4.3616 0.8626 36 1 -0.1091 5.8996 2.4210 37 1 1.8059 8.1404 2.4059 38 1 0.5792 7.8525 1.1487 39 1 0.1561 10.2666 2.2699 40 1 -0.8900 13.4220 2.5688 41 1 1.5774 3.8354 3.1026 42 1 3.2995 4.3352 2.8136 43 1 1.3471 -1.5178 -1.5646 44 1 2.3443 -0.0991 -2.0279 45 1 3.4535 -2.4540 -1.0670 46 1 4.2065 -0.8529 -0.8030 47 1 3.5448 -2.1681 1.4111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731486523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:37 Heat of formation + Delta-G solvation = -85.676693 kcal Electronic energy + Delta-G solvation = -28800.364871 eV Core-core repulsion = 24597.458528 eV Total energy + Delta-G solvation = -4202.906344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66375 -39.88179 -38.64769 -37.94963 -36.76709 -34.68372 -33.98162 -33.60827 -32.28732 -31.17466 -29.25260 -26.91150 -26.04077 -25.78557 -24.58458 -23.60346 -22.31160 -21.66165 -20.45002 -19.60915 -19.07921 -17.98259 -17.84947 -17.75417 -16.77783 -16.03733 -15.79632 -15.54915 -15.47696 -15.00760 -14.79377 -14.50227 -14.34143 -14.28197 -14.13568 -13.96970 -13.33740 -13.24987 -13.20336 -12.95515 -12.76303 -12.70988 -12.55513 -12.11839 -11.93059 -11.69343 -11.62521 -11.54201 -11.24956 -11.03846 -10.98814 -10.83475 -10.43426 -10.42252 -10.20018 -10.04437 -9.63614 -9.48928 -9.27739 -8.43666 -8.01244 -7.93930 -6.40410 -3.81295 1.84594 2.23103 2.74394 2.94016 3.21212 3.26752 3.31313 3.66268 3.84636 3.92280 4.10088 4.15715 4.30410 4.36157 4.47083 4.51791 4.59417 4.76587 4.78073 4.87527 4.99085 5.14396 5.17368 5.19558 5.28482 5.34750 5.42403 5.49365 5.59321 5.63406 5.66068 5.80069 5.82616 5.92847 5.95536 6.02898 6.19242 6.26925 6.36399 6.41825 7.16494 7.26780 7.56190 7.66503 7.67032 7.82447 8.07410 8.62596 9.19001 9.55601 10.07152 10.77235 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.001709 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.695840 B =16377.059299 C =16614.849755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.536 3.464 4 O -0.532 6.532 5 N -0.706 5.706 6 C 0.120 3.880 7 H 0.115 0.885 8 C -0.180 4.180 9 C 0.072 3.928 10 H 0.100 0.900 11 N -0.655 5.655 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.133 4.133 25 C -0.118 4.118 26 C 0.099 3.901 27 N -0.729 5.729 28 C 0.532 3.468 29 O -0.515 6.515 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.352 0.648 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.219 -27.537 -11.324 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.128 4.128 3 C 0.320 3.680 4 O -0.409 6.409 5 N -0.357 5.357 6 C 0.015 3.985 7 H 0.132 0.868 8 C -0.221 4.221 9 C -0.040 4.040 10 H 0.118 0.882 11 N -0.286 5.286 12 C -0.083 4.083 13 C 0.225 3.775 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.172 4.172 25 C -0.156 4.156 26 C -0.025 4.025 27 N -0.385 5.385 28 C 0.316 3.684 29 O -0.390 6.390 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.244 0.756 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.172 0.828 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.402 -27.219 -10.391 30.615 hybrid contribution -0.688 0.390 -0.255 0.831 sum 8.714 -26.829 -10.645 30.151 Atomic orbital electron populations 1.21695 0.89364 1.03815 1.03878 1.21663 0.99783 0.94200 0.97198 1.19696 0.80203 0.85822 0.82246 1.90692 1.37195 1.77108 1.35869 1.46008 1.51730 1.12465 1.25455 1.22487 0.98204 0.78938 0.98857 0.86755 1.24263 0.99571 0.97541 1.00675 1.22838 0.96049 0.93355 0.91733 0.88191 1.60005 1.10665 1.01593 1.56308 1.21726 1.00190 0.89060 0.97330 1.19835 0.87172 0.83168 0.87289 1.90522 1.50093 1.66340 1.39882 1.41858 1.35172 1.05968 1.37009 1.19659 1.14375 0.90673 1.18251 0.87978 1.25262 0.98528 0.96600 0.97556 1.69602 1.40323 1.09063 1.35346 0.85912 0.80526 0.77817 0.79924 1.19882 1.20987 1.19938 1.23468 1.02629 0.95599 0.95473 1.22716 0.96676 0.99377 0.96793 1.22149 0.98876 1.01786 0.79702 1.46227 1.37064 1.44060 1.11113 1.20390 0.79628 0.79646 0.88755 1.90793 1.60935 1.66065 1.21187 0.90623 0.90884 0.90824 0.75627 0.90922 0.89350 0.82770 0.89540 0.93738 0.77448 0.91829 0.88857 0.90550 0.89052 0.87148 0.89698 0.90380 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.31 37.16 0.31 -0.53 16 2 C -0.12 -0.94 0.74 -155.67 -0.12 -1.05 16 3 C 0.54 5.47 6.55 -10.98 -0.07 5.40 16 4 O -0.53 -6.71 15.08 5.57 0.08 -6.62 16 5 N -0.71 -6.95 5.22 -53.02 -0.28 -7.23 16 6 C 0.12 1.23 4.21 -67.12 -0.28 0.95 16 7 H 0.11 1.24 7.50 -51.93 -0.39 0.85 16 8 C -0.18 -1.92 7.51 -25.83 -0.19 -2.11 16 9 C 0.07 0.86 4.18 -66.81 -0.28 0.58 16 10 H 0.10 1.12 7.87 -51.93 -0.41 0.71 16 11 N -0.65 -10.41 6.24 -107.04 -0.67 -11.08 16 12 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 13 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 14 O -0.58 -15.98 15.78 5.54 0.09 -15.89 16 15 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 16 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 17 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 20 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.13 -1.43 7.63 -25.92 -0.20 -1.62 16 25 C -0.12 -0.62 6.03 -25.10 -0.15 -0.77 16 26 C 0.10 0.44 7.78 -3.12 -0.02 0.42 16 27 N -0.73 -4.54 6.25 -59.12 -0.37 -4.91 16 28 C 0.53 4.83 7.15 -10.71 -0.08 4.76 16 29 O -0.52 -6.36 17.83 5.56 0.10 -6.26 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 7.59 -51.93 -0.39 0.13 16 33 H 0.41 3.82 8.11 -40.82 -0.33 3.49 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.95 7.83 -51.93 -0.41 0.55 16 36 H 0.35 5.78 7.90 -39.29 -0.31 5.47 16 37 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.30 7.91 -51.93 -0.41 -0.11 16 44 H 0.11 0.68 6.94 -51.93 -0.36 0.32 16 45 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -34.86 391.95 -7.95 -42.81 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -7.01 Total: 16.33 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.44 Total: 9.14 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.65 Total: -61.59 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: 0.27 Total: -28.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.86 -7.95 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731486523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.862 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds