Wall clock time and date at job start Tue Mar 31 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 110.43629 * 2 1 4 4 O 1.21270 * 120.00010 * 239.29847 * 3 2 1 5 5 N 1.34775 * 119.99598 * 59.29763 * 3 2 1 6 6 C 1.46506 * 119.99893 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84852 * 334.66886 * 6 5 3 8 8 C 1.53781 * 113.61361 * 105.86287 * 6 5 3 9 9 C 1.53947 * 87.01846 * 139.95459 * 8 6 5 10 10 H 1.09002 * 113.61589 * 89.20053 * 9 8 6 11 11 N 1.46902 * 113.66788 * 220.06551 * 9 8 6 12 12 C 1.46903 * 111.00413 * 252.56228 * 11 9 8 13 13 C 1.50699 * 109.47344 * 179.97438 * 12 11 9 14 14 O 1.21295 * 119.99879 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99779 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99702 * 179.97438 * 15 13 12 17 17 H 1.08010 * 120.00038 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99982 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46790 * 60.00357 * 20 18 16 22 22 H 1.48495 * 109.47135 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47329 * 300.00510 * 20 18 16 24 24 C 1.53773 * 113.61686 * 203.47125 * 6 5 3 25 25 C 1.54628 * 110.48936 * 237.45866 * 2 1 3 26 26 C 1.54478 * 101.76630 * 216.39500 * 25 2 1 27 27 N 1.46764 * 105.47428 * 25.41214 * 26 25 2 28 28 C 1.34737 * 111.35275 * 343.02037 * 27 26 25 29 29 O 1.21280 * 125.12533 * 180.38569 * 28 27 26 30 30 H 1.08997 * 109.46896 * 60.70095 * 1 2 3 31 31 H 1.08994 * 109.47202 * 180.70236 * 1 2 3 32 32 H 1.09002 * 109.46961 * 300.70099 * 1 2 3 33 33 H 0.97005 * 120.00580 * 0.02562 * 5 3 2 34 34 H 1.09005 * 113.61233 * 254.53068 * 8 6 5 35 35 H 1.08999 * 113.61553 * 25.43257 * 8 6 5 36 36 H 1.00905 * 111.00085 * 16.51446 * 11 9 8 37 37 H 1.09003 * 109.46756 * 299.99951 * 12 11 9 38 38 H 1.08996 * 109.46906 * 59.99588 * 12 11 9 39 39 H 0.96993 * 119.99812 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00424 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.61464 * 334.56586 * 24 6 5 42 42 H 1.09000 * 113.61487 * 105.38668 * 24 6 5 43 43 H 1.09000 * 110.96569 * 334.51460 * 25 2 1 44 44 H 1.08996 * 110.96919 * 98.23487 * 25 2 1 45 45 H 1.08997 * 110.24723 * 144.41513 * 26 25 2 46 46 H 1.09005 * 110.24183 * 266.41647 * 26 25 2 47 47 H 0.97003 * 124.34743 * 162.97568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7703 1.7932 -0.9030 5 7 1.7330 2.2517 1.0036 6 6 2.2440 3.6247 1.0034 7 1 3.1723 3.7307 0.4419 8 6 1.1823 4.6771 0.6427 9 6 1.8037 5.5624 1.7382 10 1 2.6112 6.2002 1.3784 11 7 0.8123 6.2941 2.5380 12 6 0.8186 7.7247 2.2043 13 6 -0.2092 8.4406 3.0423 14 8 -0.8812 7.8200 3.8388 15 7 -0.3816 9.7704 2.9066 16 6 -1.3169 10.4216 3.6686 17 1 -1.9154 9.8690 4.3779 18 6 -1.4943 11.7926 3.5291 19 7 -0.7659 12.4650 2.6665 20 14 -2.7693 12.6798 4.5668 21 1 -2.4455 12.5044 6.0055 22 1 -2.7623 14.1260 4.2300 23 1 -4.1140 12.1139 4.2896 24 6 2.2931 4.2640 2.4011 25 6 2.0712 -0.7791 -1.2211 26 6 3.3218 -1.4651 -0.6279 27 7 3.0601 -1.5793 0.8117 28 6 2.0594 -0.7623 1.1947 29 8 1.6437 -0.6523 2.3287 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8837 33 1 1.1620 1.9469 1.7262 34 1 1.2935 5.0826 -0.3630 35 1 0.1624 4.3616 0.8626 36 1 -0.1091 5.8996 2.4210 37 1 1.8059 8.1404 2.4059 38 1 0.5792 7.8525 1.1487 39 1 0.1561 10.2666 2.2699 40 1 -0.8900 13.4220 2.5688 41 1 1.5774 3.8354 3.1026 42 1 3.2995 4.3352 2.8136 43 1 1.3471 -1.5178 -1.5646 44 1 2.3443 -0.0991 -2.0279 45 1 3.4535 -2.4540 -1.0670 46 1 4.2065 -0.8529 -0.8030 47 1 3.5448 -2.1681 1.4111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731486523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:37 Heat of formation + Delta-G solvation = -115.487808 kcal Electronic energy + Delta-G solvation = -28801.657578 eV Core-core repulsion = 24597.458528 eV Total energy + Delta-G solvation = -4204.199051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32941 -40.78270 -40.05310 -39.26569 -37.43420 -36.12995 -35.49954 -34.45430 -33.37944 -33.09909 -29.74011 -28.45384 -26.71866 -26.66076 -26.10785 -24.66596 -22.89450 -22.47198 -21.45443 -20.96704 -20.25074 -19.86717 -18.60803 -18.38546 -17.90596 -17.34471 -16.91942 -16.51991 -16.37407 -16.33355 -16.08302 -15.77780 -15.53543 -15.19362 -14.97614 -14.81761 -14.68084 -14.38089 -14.31866 -13.71211 -13.51997 -13.48154 -13.44990 -13.35507 -13.25007 -13.12967 -12.83264 -12.43904 -12.38154 -12.18421 -12.16145 -12.13517 -11.95276 -11.79305 -11.50179 -11.15217 -10.82264 -10.33817 -10.16467 -10.12152 -10.01692 -9.24880 -8.46431 -5.95368 1.12530 1.39978 1.41805 1.48407 1.52845 2.05302 2.07886 2.29495 2.34377 2.96195 3.12409 3.20708 3.32475 3.41980 3.53473 3.63667 3.70555 3.85851 3.91145 3.98211 4.06228 4.33238 4.37171 4.46011 4.52885 4.62371 4.64107 4.68557 4.74330 4.75420 4.77764 4.96254 4.99068 5.03976 5.05901 5.10091 5.11881 5.40703 5.47955 5.68363 5.87844 5.92483 6.14185 6.36691 6.41023 6.60291 7.01502 7.09267 7.12484 7.56289 8.11647 8.70638 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.001709 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.695840 B =16377.059299 C =16614.849755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.533 3.467 4 O -0.558 6.558 5 N -0.705 5.705 6 C 0.127 3.873 7 H 0.113 0.887 8 C -0.171 4.171 9 C 0.070 3.930 10 H 0.114 0.886 11 N -0.669 5.669 12 C 0.064 3.936 13 C 0.436 3.564 14 O -0.625 6.625 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.127 4.127 25 C -0.114 4.114 26 C 0.098 3.902 27 N -0.719 5.719 28 C 0.524 3.476 29 O -0.556 6.556 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.346 0.654 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.766 -28.493 -12.567 32.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 C 0.318 3.682 4 O -0.436 6.436 5 N -0.355 5.355 6 C 0.022 3.978 7 H 0.131 0.869 8 C -0.212 4.212 9 C -0.041 4.041 10 H 0.132 0.868 11 N -0.300 5.300 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.511 6.511 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.026 4.026 27 N -0.374 5.374 28 C 0.309 3.691 29 O -0.434 6.434 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.137 0.863 46 H 0.091 0.909 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.996 -28.200 -11.672 32.115 hybrid contribution -0.800 0.620 0.109 1.018 sum 9.196 -27.579 -11.563 31.287 Atomic orbital electron populations 1.21726 0.88501 1.04723 1.03741 1.21703 1.00496 0.92605 0.97884 1.20130 0.79646 0.86742 0.81642 1.90675 1.38349 1.77854 1.36750 1.46034 1.51567 1.12356 1.25546 1.22343 0.97957 0.79208 0.98292 0.86950 1.24169 0.99485 0.97174 1.00343 1.22967 0.95538 0.93546 0.92035 0.86809 1.60020 1.11156 1.00898 1.57910 1.21596 0.98665 0.89491 0.97043 1.20931 0.87273 0.82610 0.86815 1.90490 1.51852 1.67064 1.41719 1.41929 1.35145 1.06778 1.37138 1.19638 1.15889 0.91577 1.19417 0.90347 1.26045 1.00130 0.96689 0.98420 1.69662 1.41000 1.09540 1.35844 0.84985 0.77988 0.77141 0.78195 1.19788 1.19434 1.19678 1.23405 1.02742 0.94879 0.95610 1.22791 0.97504 0.99477 0.95430 1.22333 0.98218 1.03550 0.78481 1.46288 1.35880 1.43028 1.12177 1.20648 0.80029 0.79970 0.88460 1.90768 1.62425 1.67513 1.22711 0.89814 0.89457 0.91922 0.75365 0.90535 0.89566 0.83413 0.87654 0.91418 0.76934 0.91278 0.89603 0.89817 0.86513 0.87904 0.86305 0.90899 0.73868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.31 71.98 0.60 -0.92 16 2 C -0.12 -1.72 0.74 -52.93 -0.04 -1.76 16 3 C 0.53 10.54 6.55 87.66 0.57 11.11 16 4 O -0.56 -13.67 15.08 -3.00 -0.05 -13.71 16 5 N -0.71 -13.62 5.22 -440.04 -2.30 -15.92 16 6 C 0.13 2.50 4.21 45.51 0.19 2.69 16 7 H 0.11 2.31 7.50 -2.39 -0.02 2.30 16 8 C -0.17 -3.46 7.51 31.18 0.23 -3.23 16 9 C 0.07 1.58 4.18 45.50 0.19 1.77 16 10 H 0.11 2.28 7.87 -2.39 -0.02 2.26 16 11 N -0.67 -20.79 6.24 -492.56 -3.08 -23.86 16 12 C 0.06 2.19 6.01 85.56 0.51 2.70 16 13 C 0.44 20.91 7.82 87.66 0.69 21.59 16 14 O -0.62 -34.99 15.78 -3.08 -0.05 -35.04 16 15 N -0.57 -29.62 5.29 -306.98 -1.62 -31.25 16 16 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 20 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C -0.13 -2.63 7.63 31.12 0.24 -2.39 16 25 C -0.11 -0.97 6.03 31.65 0.19 -0.78 16 26 C 0.10 0.64 7.78 86.83 0.68 1.32 16 27 N -0.72 -7.84 6.25 -459.37 -2.87 -10.71 16 28 C 0.52 9.13 7.15 87.85 0.63 9.76 16 29 O -0.56 -13.78 17.83 -3.03 -0.05 -13.84 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.88 7.59 -2.39 -0.02 0.86 16 33 H 0.41 7.71 8.11 -92.70 -0.75 6.96 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.80 7.83 -2.39 -0.02 1.78 16 36 H 0.35 11.36 7.90 -89.69 -0.71 10.65 16 37 H 0.11 3.22 8.13 -2.39 -0.02 3.20 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.09 1.93 8.11 -2.39 -0.02 1.91 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.12 0.40 7.91 -2.39 -0.02 0.38 16 44 H 0.10 1.10 6.94 -2.39 -0.02 1.08 16 45 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.42 3.31 8.96 -92.71 -0.83 2.48 16 Total: -1.00 -76.16 391.95 -3.72 -79.88 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.98 Total: 45.57 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 5.96 Total: 23.19 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -9.58 Total: -131.31 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -0.15 Total: -62.59 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -76.16 -3.72 -79.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731486523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.605 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds