Wall clock time and date at job start Tue Mar 31 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47616 * 2 1 4 4 O 1.34253 * 126.52844 * 269.97957 * 3 2 1 5 5 C 1.34048 * 108.22929 * 179.97438 * 4 3 2 6 6 N 1.29938 * 109.24221 * 359.97438 * 5 4 3 7 7 C 1.36067 * 108.47394 * 359.97438 * 6 5 4 8 8 C 1.47429 * 126.44225 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99504 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00051 * 0.03195 * 8 7 6 11 11 C 1.46505 * 119.99996 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47193 * 179.97438 * 11 10 8 13 13 N 1.46903 * 109.47181 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00028 * 66.04125 * 13 12 11 15 15 C 1.53010 * 109.46806 * 59.18872 * 14 13 12 16 16 C 1.46898 * 111.00237 * 190.00261 * 13 12 11 17 17 C 1.50694 * 109.47254 * 164.28334 * 16 13 12 18 18 O 1.21292 * 119.99939 * 354.29614 * 17 16 13 19 19 N 1.34777 * 120.00518 * 174.30120 * 17 16 13 20 20 C 1.37085 * 120.00713 * 180.02562 * 19 17 16 21 21 H 1.08008 * 120.00130 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00508 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46958 * 59.99854 * 24 22 20 26 26 H 1.48498 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46903 * 300.00020 * 24 22 20 28 28 H 1.09008 * 109.46779 * 299.99848 * 1 2 3 29 29 H 1.09000 * 109.47259 * 59.99350 * 1 2 3 30 30 H 1.08996 * 109.47583 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46779 * 240.00152 * 2 1 3 32 32 H 1.09000 * 109.47259 * 120.00650 * 2 1 3 33 33 H 1.08003 * 125.37841 * 180.02562 * 5 4 3 34 34 H 0.97005 * 120.00276 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46836 * 300.00290 * 11 10 8 36 36 H 1.09006 * 109.46873 * 59.99747 * 11 10 8 37 37 H 1.08995 * 109.47337 * 299.99783 * 12 11 10 38 38 H 1.08998 * 109.47416 * 60.00066 * 12 11 10 39 39 H 1.08998 * 109.47017 * 179.18481 * 14 13 12 40 40 H 1.08994 * 109.47597 * 299.18665 * 14 13 12 41 41 H 1.08999 * 109.46791 * 179.97438 * 15 14 13 42 42 H 1.08991 * 109.46812 * 299.98447 * 15 14 13 43 43 H 1.09002 * 109.46665 * 59.98547 * 15 14 13 44 44 H 1.08998 * 109.46786 * 284.28418 * 16 13 12 45 45 H 1.08996 * 109.47177 * 44.28409 * 16 13 12 46 46 H 0.97005 * 119.99416 * 359.97438 * 19 17 16 47 47 H 0.96997 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1740 -1.0788 5 6 2.7228 3.3741 -0.6579 6 7 2.7287 3.3947 0.6413 7 6 2.3001 2.1851 1.0936 8 6 2.1552 1.7785 2.5033 9 8 1.7599 0.6613 2.7762 10 7 2.4606 2.6450 3.4894 11 6 2.3161 2.2411 4.8902 12 6 2.7260 3.4006 5.8002 13 7 2.5816 2.9954 7.2048 14 6 3.5337 1.9300 7.5459 15 6 4.9612 2.4254 7.3052 16 6 2.7361 4.1471 8.1036 17 6 2.2111 3.7915 9.4706 18 8 1.6598 2.7261 9.6503 19 7 2.3541 4.6572 10.4937 20 6 1.8770 4.3335 11.7374 21 1 1.3862 3.3848 11.8975 22 6 2.0249 5.2258 12.7923 23 7 2.6226 6.3798 12.5977 24 14 1.3742 4.7849 14.4869 25 1 2.0414 3.5482 14.9669 26 1 1.6549 5.8973 15.4297 27 1 -0.0916 4.5590 14.4109 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.0127 4.1946 -1.2977 34 1 2.7762 3.5360 3.2716 35 1 1.2775 1.9745 5.0861 36 1 2.9555 1.3807 5.0881 37 1 3.7646 3.6667 5.6042 38 1 2.0869 4.2612 5.6024 39 1 3.4152 1.6591 8.5950 40 1 3.3417 1.0575 6.9214 41 1 5.6676 1.6350 7.5587 42 1 5.0797 2.6961 6.2561 43 1 5.1530 3.2980 7.9296 44 1 3.7909 4.4118 8.1769 45 1 2.1756 4.9942 7.7082 46 1 2.7953 5.5091 10.3500 47 1 2.7255 7.0029 13.3339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731800905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:08 Heat of formation + Delta-G solvation = -44.679299 kcal Electronic energy + Delta-G solvation = -28676.802865 eV Core-core repulsion = 24475.674302 eV Total energy + Delta-G solvation = -4201.128563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.85421 -39.77743 -38.82267 -37.09779 -35.32552 -34.92675 -34.31580 -33.79313 -31.21900 -30.50382 -29.93522 -29.16420 -26.36971 -24.94182 -24.26422 -24.03589 -23.27832 -21.78153 -20.80590 -20.28870 -18.94042 -18.40874 -17.77688 -17.24836 -16.60481 -16.30739 -16.16472 -15.83423 -15.52741 -15.24825 -14.93951 -14.76071 -14.50035 -14.18157 -13.90929 -13.75927 -13.35206 -13.27604 -13.03406 -13.00685 -12.90836 -12.13603 -12.11700 -11.86609 -11.79295 -11.65934 -11.59910 -11.47014 -11.36433 -11.15066 -11.08889 -10.90301 -10.45070 -10.41885 -10.31021 -10.17813 -9.44429 -9.42242 -9.11222 -8.44315 -7.93290 -7.83971 -6.38412 -3.78930 0.72270 1.66453 2.13442 2.84274 3.04979 3.22490 3.27753 3.32419 3.62519 3.95545 4.05726 4.16322 4.27917 4.47882 4.65546 4.79758 4.84529 4.89404 5.01560 5.11811 5.13587 5.26186 5.35106 5.37229 5.42361 5.44928 5.47051 5.62855 5.63993 5.69609 5.71894 5.82194 5.86107 5.87820 5.95715 6.08270 6.24269 6.28626 6.34236 6.54096 6.96813 7.23289 7.33298 7.36843 7.58183 7.95576 8.09861 8.66055 9.22009 9.58613 10.11131 10.79397 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.001780 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.713843 B =15725.606684 C =16013.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.048 3.952 4 O -0.199 6.199 5 C 0.174 3.826 6 N -0.464 5.464 7 C -0.076 4.076 8 C 0.602 3.398 9 O -0.531 6.531 10 N -0.710 5.710 11 C 0.123 3.877 12 C 0.039 3.961 13 N -0.507 5.507 14 C 0.047 3.953 15 C -0.195 4.195 16 C 0.043 3.957 17 C 0.445 3.555 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.255 0.745 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -4.957 -28.436 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.085 6.085 5 C -0.054 4.054 6 N -0.193 5.193 7 C -0.196 4.196 8 C 0.387 3.613 9 O -0.408 6.408 10 N -0.361 5.361 11 C -0.001 4.001 12 C -0.089 4.089 13 N -0.230 5.230 14 C -0.081 4.081 15 C -0.253 4.253 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.271 0.729 34 H 0.242 0.758 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.239 -5.997 -27.504 28.239 hybrid contribution 0.940 1.079 0.048 1.432 sum 3.179 -4.918 -27.456 28.073 Atomic orbital electron populations 1.21711 0.92880 1.03110 1.02519 1.20420 0.97255 0.85279 1.05523 1.23858 0.98149 0.95590 0.83301 1.84385 1.63641 1.24192 1.36323 1.28022 0.99150 0.87066 0.91212 1.70738 1.17157 1.21135 1.10235 1.21502 1.10910 0.91569 0.95626 1.16637 0.77663 0.84543 0.82466 1.90809 1.46795 1.19997 1.83165 1.45713 1.66954 1.17308 1.06165 1.21391 1.03260 0.97542 0.77886 1.22278 1.00168 0.97300 0.89187 1.61662 1.51642 1.09533 1.00153 1.22273 0.87925 0.94035 1.03849 1.22465 0.99284 1.02325 1.01258 1.21921 1.00124 0.93114 0.93709 1.19731 0.85572 0.86348 0.85325 1.90521 1.46895 1.24517 1.83860 1.41858 1.52350 1.17916 1.08261 1.19640 1.34519 1.03913 0.84618 0.88001 1.25249 0.97413 0.95249 1.00108 1.69603 1.43141 1.08292 1.33469 0.85925 0.79371 0.77823 0.81139 1.19957 1.21043 1.19920 0.91638 0.92635 0.90881 0.89697 0.86356 0.72907 0.75751 0.89956 0.90924 0.93833 0.90257 0.88789 0.90892 0.92123 0.92861 0.92254 0.92820 0.89442 0.77576 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.05 -0.36 5.93 -27.89 -0.17 -0.53 16 3 C 0.05 0.44 6.69 -35.08 -0.23 0.21 16 4 O -0.20 -1.55 10.73 6.53 0.07 -1.48 16 5 C 0.17 1.10 13.19 51.96 0.69 1.78 16 6 N -0.46 -4.39 11.06 -11.48 -0.13 -4.52 16 7 C -0.08 -0.83 6.99 -83.02 -0.58 -1.41 16 8 C 0.60 7.49 7.81 -12.52 -0.10 7.39 16 9 O -0.53 -7.70 14.80 5.27 0.08 -7.62 16 10 N -0.71 -7.93 5.55 -61.38 -0.34 -8.27 16 11 C 0.12 1.51 5.60 -4.04 -0.02 1.49 16 12 C 0.04 0.48 4.81 -3.83 -0.02 0.47 16 13 N -0.51 -8.19 4.31 -236.08 -1.02 -9.20 16 14 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16 15 C -0.19 -2.54 9.27 37.16 0.34 -2.19 16 16 C 0.04 0.74 5.34 -4.98 -0.03 0.72 16 17 C 0.45 10.46 7.36 -10.99 -0.08 10.38 16 18 O -0.57 -15.56 14.70 5.55 0.08 -15.48 16 19 N -0.57 -14.33 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 28 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.12 1.05 6.48 -51.93 -0.34 0.72 16 33 H 0.26 0.25 8.06 -52.48 -0.42 -0.17 16 34 H 0.41 3.93 8.20 -40.82 -0.33 3.60 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.94 6.57 -51.93 -0.34 0.60 16 37 H 0.04 0.48 5.97 -51.93 -0.31 0.17 16 38 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 39 H 0.09 1.79 6.54 -51.93 -0.34 1.45 16 40 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.61 6.26 -51.93 -0.33 0.29 16 43 H 0.06 0.82 6.29 -51.93 -0.33 0.50 16 44 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 45 H 0.09 1.38 7.81 -51.93 -0.41 0.98 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -34.10 388.70 -6.41 -40.51 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.57 Total: 11.93 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.09 Total: 10.38 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.82 Total: -60.28 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.23 Total: -24.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.10 -6.41 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731800905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.165 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds