Wall clock time and date at job start Tue Mar 31 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47616 * 2 1 4 4 O 1.34253 * 126.52844 * 269.97957 * 3 2 1 5 5 C 1.34048 * 108.22929 * 179.97438 * 4 3 2 6 6 N 1.29938 * 109.24221 * 359.97438 * 5 4 3 7 7 C 1.36067 * 108.47394 * 359.97438 * 6 5 4 8 8 C 1.47429 * 126.44225 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99504 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00051 * 0.03195 * 8 7 6 11 11 C 1.46505 * 119.99996 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47193 * 179.97438 * 11 10 8 13 13 N 1.46903 * 109.47181 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00028 * 66.04125 * 13 12 11 15 15 C 1.53010 * 109.46806 * 59.18872 * 14 13 12 16 16 C 1.46898 * 111.00237 * 190.00261 * 13 12 11 17 17 C 1.50694 * 109.47254 * 164.28334 * 16 13 12 18 18 O 1.21292 * 119.99939 * 354.29614 * 17 16 13 19 19 N 1.34777 * 120.00518 * 174.30120 * 17 16 13 20 20 C 1.37085 * 120.00713 * 180.02562 * 19 17 16 21 21 H 1.08008 * 120.00130 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00508 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46958 * 59.99854 * 24 22 20 26 26 H 1.48498 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46903 * 300.00020 * 24 22 20 28 28 H 1.09008 * 109.46779 * 299.99848 * 1 2 3 29 29 H 1.09000 * 109.47259 * 59.99350 * 1 2 3 30 30 H 1.08996 * 109.47583 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46779 * 240.00152 * 2 1 3 32 32 H 1.09000 * 109.47259 * 120.00650 * 2 1 3 33 33 H 1.08003 * 125.37841 * 180.02562 * 5 4 3 34 34 H 0.97005 * 120.00276 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46836 * 300.00290 * 11 10 8 36 36 H 1.09006 * 109.46873 * 59.99747 * 11 10 8 37 37 H 1.08995 * 109.47337 * 299.99783 * 12 11 10 38 38 H 1.08998 * 109.47416 * 60.00066 * 12 11 10 39 39 H 1.08998 * 109.47017 * 179.18481 * 14 13 12 40 40 H 1.08994 * 109.47597 * 299.18665 * 14 13 12 41 41 H 1.08999 * 109.46791 * 179.97438 * 15 14 13 42 42 H 1.08991 * 109.46812 * 299.98447 * 15 14 13 43 43 H 1.09002 * 109.46665 * 59.98547 * 15 14 13 44 44 H 1.08998 * 109.46786 * 284.28418 * 16 13 12 45 45 H 1.08996 * 109.47177 * 44.28409 * 16 13 12 46 46 H 0.97005 * 119.99416 * 359.97438 * 19 17 16 47 47 H 0.96997 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1740 -1.0788 5 6 2.7228 3.3741 -0.6579 6 7 2.7287 3.3947 0.6413 7 6 2.3001 2.1851 1.0936 8 6 2.1552 1.7785 2.5033 9 8 1.7599 0.6613 2.7762 10 7 2.4606 2.6450 3.4894 11 6 2.3161 2.2411 4.8902 12 6 2.7260 3.4006 5.8002 13 7 2.5816 2.9954 7.2048 14 6 3.5337 1.9300 7.5459 15 6 4.9612 2.4254 7.3052 16 6 2.7361 4.1471 8.1036 17 6 2.2111 3.7915 9.4706 18 8 1.6598 2.7261 9.6503 19 7 2.3541 4.6572 10.4937 20 6 1.8770 4.3335 11.7374 21 1 1.3862 3.3848 11.8975 22 6 2.0249 5.2258 12.7923 23 7 2.6226 6.3798 12.5977 24 14 1.3742 4.7849 14.4869 25 1 2.0414 3.5482 14.9669 26 1 1.6549 5.8973 15.4297 27 1 -0.0916 4.5590 14.4109 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.0127 4.1946 -1.2977 34 1 2.7762 3.5360 3.2716 35 1 1.2775 1.9745 5.0861 36 1 2.9555 1.3807 5.0881 37 1 3.7646 3.6667 5.6042 38 1 2.0869 4.2612 5.6024 39 1 3.4152 1.6591 8.5950 40 1 3.3417 1.0575 6.9214 41 1 5.6676 1.6350 7.5587 42 1 5.0797 2.6961 6.2561 43 1 5.1530 3.2980 7.9296 44 1 3.7909 4.4118 8.1769 45 1 2.1756 4.9942 7.7082 46 1 2.7953 5.5091 10.3500 47 1 2.7255 7.0029 13.3339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731800905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:07 Heat of formation + Delta-G solvation = -73.582839 kcal Electronic energy + Delta-G solvation = -28678.056217 eV Core-core repulsion = 24475.674302 eV Total energy + Delta-G solvation = -4202.381915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.46768 -40.81846 -40.34628 -38.61805 -36.15379 -35.89101 -35.64546 -35.00550 -33.25100 -31.57140 -31.03496 -30.05558 -27.83999 -26.13913 -25.65489 -24.70493 -24.24256 -22.51290 -21.80803 -21.42144 -20.63074 -19.77220 -19.18343 -17.88623 -17.72977 -17.49720 -17.20714 -17.08454 -16.58663 -16.46840 -16.14763 -15.82828 -15.65299 -15.58008 -15.10761 -14.88624 -14.60842 -14.51618 -14.34076 -14.02784 -13.65636 -13.57624 -13.42597 -13.05546 -12.99634 -12.76770 -12.70057 -12.56641 -12.41952 -12.40276 -12.21697 -12.17320 -12.09953 -11.80517 -11.67727 -11.40826 -11.23938 -10.30131 -10.27764 -9.97583 -9.90757 -9.16136 -8.44233 -5.92378 0.02178 1.04295 1.40514 1.41923 1.52331 1.53682 1.94961 2.10122 2.19470 2.31117 2.85010 3.12528 3.22624 3.45260 3.54596 3.73148 3.85176 4.00260 4.08220 4.14630 4.22926 4.28068 4.28928 4.31651 4.39706 4.49011 4.54967 4.57907 4.59899 4.75875 4.82562 4.85932 4.93129 5.00152 5.09632 5.11292 5.18612 5.23257 5.32031 5.33744 5.42860 5.88179 6.08723 6.17412 6.25814 6.56937 6.64221 7.05276 7.16238 7.60443 8.17234 8.72929 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.001780 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.713843 B =15725.606684 C =16013.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.047 3.953 4 O -0.198 6.198 5 C 0.196 3.804 6 N -0.492 5.492 7 C -0.102 4.102 8 C 0.596 3.404 9 O -0.560 6.560 10 N -0.701 5.701 11 C 0.133 3.867 12 C 0.048 3.952 13 N -0.530 5.530 14 C 0.049 3.951 15 C -0.185 4.185 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.305 0.695 34 H 0.416 0.584 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -3.738 -30.635 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.010 4.010 4 O -0.084 6.084 5 C -0.032 4.032 6 N -0.221 5.221 7 C -0.220 4.220 8 C 0.383 3.617 9 O -0.440 6.440 10 N -0.352 5.352 11 C 0.009 3.991 12 C -0.080 4.080 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.243 4.243 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.320 0.680 34 H 0.253 0.747 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.184 -4.738 -29.716 30.260 hybrid contribution 0.650 0.693 0.607 1.128 sum 3.835 -4.045 -29.109 29.638 Atomic orbital electron populations 1.21679 0.92613 1.03775 1.01727 1.20444 0.97401 0.84752 1.05877 1.24056 0.97575 0.96094 0.83325 1.84420 1.63678 1.24657 1.35667 1.29194 0.96027 0.87104 0.90869 1.70710 1.18797 1.20713 1.11865 1.21339 1.12861 0.92867 0.94966 1.16955 0.77074 0.84227 0.83451 1.90788 1.48141 1.21219 1.83819 1.45578 1.66647 1.17601 1.05418 1.21158 1.01764 0.97516 0.78693 1.22257 1.01797 0.97384 0.86531 1.61534 1.52627 1.09287 1.01901 1.22148 0.89725 0.94577 1.01388 1.22363 0.97378 1.02180 1.02392 1.21769 1.01295 0.94122 0.90296 1.20820 0.83994 0.85160 0.87077 1.90493 1.48430 1.26212 1.84997 1.41920 1.52842 1.18472 1.08149 1.19592 1.36213 1.03712 0.86537 0.90500 1.26007 0.97189 0.94987 1.03168 1.69662 1.43190 1.08685 1.34634 0.85015 0.78595 0.77921 0.76958 1.19805 1.19476 1.19853 0.94134 0.91569 0.89554 0.87197 0.88078 0.68047 0.74665 0.92167 0.91579 0.91586 0.88944 0.93012 0.90108 0.91197 0.90718 0.92993 0.90627 0.87082 0.77052 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.05 -0.69 5.93 29.85 0.18 -0.51 16 3 C 0.05 0.82 6.69 25.18 0.17 0.99 16 4 O -0.20 -2.59 10.73 0.44 0.00 -2.59 16 5 C 0.20 1.88 13.19 130.52 1.72 3.60 16 6 N -0.49 -8.40 11.06 -305.14 -3.37 -11.78 16 7 C -0.10 -2.14 6.99 40.41 0.28 -1.86 16 8 C 0.60 14.94 7.81 86.67 0.68 15.62 16 9 O -0.56 -16.85 14.80 -4.06 -0.06 -16.91 16 10 N -0.70 -15.21 5.55 -466.36 -2.59 -17.80 16 11 C 0.13 3.22 5.60 86.38 0.48 3.70 16 12 C 0.05 1.10 4.81 86.30 0.42 1.51 16 13 N -0.53 -16.80 4.31 -900.83 -3.88 -20.68 16 14 C 0.05 1.55 5.52 86.31 0.48 2.02 16 15 C -0.18 -4.52 9.27 71.99 0.67 -3.85 16 16 C 0.06 1.91 5.34 85.56 0.46 2.37 16 17 C 0.44 21.20 7.36 87.66 0.65 21.85 16 18 O -0.62 -34.67 14.70 -3.07 -0.05 -34.71 16 19 N -0.58 -29.72 5.29 -306.99 -1.62 -31.35 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.92 13.05 21.66 0.28 -49.63 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 1.85 6.48 -2.39 -0.02 1.83 16 33 H 0.30 -0.83 8.06 -2.91 -0.02 -0.86 16 34 H 0.42 7.45 8.20 -92.70 -0.76 6.69 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.70 6.57 -2.38 -0.02 1.68 16 37 H 0.07 1.25 5.97 -2.39 -0.01 1.24 16 38 H 0.09 1.90 7.86 -2.39 -0.02 1.88 16 39 H 0.05 2.06 6.54 -2.39 -0.02 2.04 16 40 H 0.08 2.35 6.51 -2.39 -0.02 2.34 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.51 6.26 -2.39 -0.01 1.49 16 43 H 0.05 1.35 6.29 -2.39 -0.02 1.33 16 44 H 0.08 2.27 5.97 -2.39 -0.01 2.26 16 45 H 0.11 3.28 7.81 -2.39 -0.02 3.26 16 46 H 0.40 19.31 7.90 -92.70 -0.73 18.57 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -76.96 388.70 -1.55 -78.52 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.46 Total: 35.66 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 8.16 Total: 25.77 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -11.18 Total: -131.24 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.10 Total: -54.22 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -76.96 -1.55 -78.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731800905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.934 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds