Wall clock time and date at job start Tue Mar 31 2020 22:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47311 * 2 1 4 4 O 1.34254 * 126.52857 * 270.02982 * 3 2 1 5 5 C 1.34053 * 108.23160 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.23686 * 0.02562 * 5 4 3 7 7 C 1.36066 * 108.48322 * 359.73046 * 6 5 4 8 8 C 1.47418 * 126.45162 * 180.30333 * 7 6 5 9 9 O 1.21611 * 119.99606 * 180.14276 * 8 7 6 10 10 N 1.34769 * 119.99934 * 0.14671 * 8 7 6 11 11 C 1.46510 * 119.99852 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46854 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47624 * 295.00122 * 12 11 10 14 14 C 1.52999 * 109.46833 * 175.00057 * 12 11 10 15 15 C 1.52993 * 109.47291 * 175.38026 * 14 12 11 16 16 N 1.46897 * 109.47005 * 55.00317 * 12 11 10 17 17 C 1.46904 * 111.00080 * 62.88266 * 16 12 11 18 18 C 1.50699 * 109.47307 * 185.63506 * 17 16 12 19 19 O 1.21296 * 119.99919 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00140 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99942 * 179.97438 * 20 18 17 22 22 H 1.08010 * 120.00056 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00136 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00177 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47337 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47105 * 119.99602 * 25 23 21 28 28 H 1.48499 * 109.47063 * 239.99903 * 25 23 21 29 29 H 1.09001 * 109.47234 * 299.99978 * 1 2 3 30 30 H 1.08998 * 109.47593 * 59.99767 * 1 2 3 31 31 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46745 * 240.00222 * 2 1 3 33 33 H 1.08998 * 109.47593 * 120.00233 * 2 1 3 34 34 H 1.08000 * 125.38162 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00359 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.46880 * 299.99993 * 11 10 8 37 37 H 1.09004 * 109.46926 * 59.99861 * 11 10 8 38 38 H 1.09007 * 109.47062 * 295.38074 * 14 12 11 39 39 H 1.09001 * 109.47122 * 55.37217 * 14 12 11 40 40 H 1.08996 * 109.47192 * 298.72994 * 15 14 12 41 41 H 1.09006 * 109.47573 * 58.73153 * 15 14 12 42 42 H 1.09006 * 109.47489 * 178.73063 * 15 14 12 43 43 H 1.00896 * 111.00182 * 186.83364 * 16 12 11 44 44 H 1.09001 * 109.47305 * 305.63656 * 17 16 12 45 45 H 1.08998 * 109.46944 * 65.63651 * 17 16 12 46 46 H 0.96994 * 120.00160 * 0.02562 * 20 18 17 47 47 H 0.96994 * 120.00070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2982 2.1744 -1.0788 5 6 2.7221 3.3744 -0.6580 6 7 2.7301 3.3942 0.6412 7 6 2.2975 2.1861 1.0937 8 6 2.1467 1.7816 2.5032 9 8 1.7503 0.6647 2.7761 10 7 2.4482 2.6494 3.4893 11 6 2.2978 2.2475 4.8901 12 6 2.7042 3.4084 5.8001 13 1 3.7665 3.6158 5.6721 14 6 2.4298 3.0337 7.2580 15 6 2.9415 4.1460 8.1754 16 7 1.9259 4.6031 5.4468 17 6 0.4912 4.3826 5.6728 18 6 -0.2851 5.5731 5.1717 19 8 0.2993 6.5127 4.6747 20 7 -1.6288 5.5935 5.2748 21 6 -2.3349 6.6767 4.8194 22 1 -1.8144 7.5137 4.3776 23 6 -3.7201 6.6980 4.9262 24 7 -4.3534 5.6795 5.4632 25 14 -4.6823 8.1737 4.3050 26 1 -3.7419 9.1790 3.7479 27 1 -5.6270 7.7382 3.2452 28 1 -5.4428 8.7773 5.4286 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0114 4.1951 -1.2977 35 1 2.7647 3.5400 3.2716 36 1 1.2584 1.9813 5.0822 37 1 2.9364 1.3874 5.0919 38 1 1.3572 2.9063 7.4047 39 1 2.9422 2.1016 7.4962 40 1 4.0178 4.2580 8.0451 41 1 2.4454 5.0830 7.9222 42 1 2.7258 3.8895 9.2127 43 1 2.2521 5.4108 5.9559 44 1 0.1720 3.4889 5.1366 45 1 0.3073 4.2516 6.7391 46 1 -2.0961 4.8420 5.6718 47 1 -5.3204 5.6941 5.5374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732194204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:51 Heat of formation + Delta-G solvation = -87.598430 kcal Electronic energy + Delta-G solvation = -29764.275040 eV Core-core repulsion = 25561.285364 eV Total energy + Delta-G solvation = -4202.989677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.44593 -40.82995 -40.14548 -38.65194 -35.99464 -35.92263 -35.34357 -34.81930 -33.31706 -32.76663 -30.63737 -29.62325 -28.16700 -26.21805 -25.63322 -24.63226 -23.90434 -22.34340 -21.80592 -21.32010 -20.60111 -19.89836 -19.07079 -18.33926 -17.85095 -17.28863 -17.15698 -16.90454 -16.51016 -16.15630 -15.96577 -15.86086 -15.63183 -15.59216 -15.20154 -14.89499 -14.70225 -14.42948 -14.35309 -14.05481 -13.59012 -13.55447 -13.53354 -13.17321 -12.91504 -12.76152 -12.70475 -12.41653 -12.40577 -12.33830 -12.18741 -12.12980 -11.85051 -11.75682 -11.67155 -11.51354 -11.14769 -10.35522 -10.19330 -10.01735 -9.84814 -9.32796 -8.47406 -5.96137 0.04626 1.06538 1.35082 1.39782 1.54325 1.57137 2.05078 2.13486 2.27212 2.28687 2.92667 3.15197 3.19640 3.51781 3.56177 3.70883 3.81315 4.02703 4.08853 4.15498 4.22846 4.26822 4.30365 4.35178 4.45795 4.51334 4.55061 4.57531 4.72013 4.79093 4.79620 4.90977 4.92401 5.09527 5.11549 5.18173 5.23497 5.25542 5.37874 5.39807 5.42995 5.87522 6.08437 6.32643 6.41336 6.59161 6.63342 7.12097 7.12242 7.55595 8.11055 8.70454 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.003543 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.101782 B = 7900.117995 C =10081.309410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.042 3.958 4 O -0.198 6.198 5 C 0.191 3.809 6 N -0.496 5.496 7 C -0.105 4.105 8 C 0.592 3.408 9 O -0.563 6.563 10 N -0.693 5.693 11 C 0.125 3.875 12 C 0.083 3.917 13 H 0.109 0.891 14 C -0.154 4.154 15 C -0.151 4.151 16 N -0.668 5.668 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.302 0.698 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.352 0.648 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 -12.142 -6.037 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 C -0.015 4.015 4 O -0.084 6.084 5 C -0.038 4.038 6 N -0.225 5.225 7 C -0.223 4.223 8 C 0.378 3.622 9 O -0.444 6.444 10 N -0.343 5.343 11 C 0.002 3.998 12 C -0.027 4.027 13 H 0.127 0.873 14 C -0.194 4.194 15 C -0.209 4.209 16 N -0.301 5.301 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.317 0.683 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.172 0.828 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.509 -11.951 -6.399 20.598 hybrid contribution -1.113 0.619 0.475 1.359 sum 14.396 -11.331 -5.925 19.255 Atomic orbital electron populations 1.21690 0.93025 1.03821 1.01401 1.20434 0.96969 0.84358 1.06122 1.24161 0.97792 0.96345 0.83214 1.84396 1.63778 1.24483 1.35744 1.29124 0.96459 0.87276 0.90900 1.70755 1.18698 1.21040 1.11961 1.21540 1.12567 0.92501 0.95701 1.16963 0.77340 0.84426 0.83482 1.90729 1.48711 1.21099 1.83844 1.45674 1.65576 1.17299 1.05757 1.21577 1.01572 0.97353 0.79323 1.21963 0.98981 0.88870 0.92904 0.87287 1.22160 1.02193 1.00759 0.94276 1.21745 1.01771 0.97692 0.99649 1.60114 1.00745 1.06106 1.63096 1.21495 0.89689 0.95597 0.99952 1.20878 0.82601 0.90011 0.83811 1.90488 1.69725 1.39899 1.50222 1.41947 1.05501 1.19144 1.54745 1.19698 0.89873 0.98265 1.38299 0.90334 1.26042 0.97091 1.01127 0.97062 1.69683 1.10042 1.31739 1.44842 0.84883 0.77789 0.77523 0.78219 1.19707 1.19731 1.19419 0.94694 0.92058 0.88991 0.86884 0.87584 0.68349 0.74717 0.92615 0.89398 0.92026 0.89100 0.91215 0.94174 0.91712 0.82770 0.89419 0.91275 0.77294 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.04 -0.83 5.92 29.85 0.18 -0.65 16 3 C 0.04 1.05 6.69 25.19 0.17 1.22 16 4 O -0.20 -4.18 10.73 0.38 0.00 -4.18 16 5 C 0.19 3.70 13.19 130.52 1.72 5.42 16 6 N -0.50 -13.90 11.06 -305.14 -3.37 -17.27 16 7 C -0.10 -3.11 6.99 40.41 0.28 -2.83 16 8 C 0.59 18.86 7.81 86.66 0.68 19.54 16 9 O -0.56 -19.15 14.81 -4.07 -0.06 -19.21 16 10 N -0.69 -20.20 5.39 -466.36 -2.51 -22.71 16 11 C 0.13 3.07 4.76 86.38 0.41 3.49 16 12 C 0.08 1.78 2.70 44.92 0.12 1.90 16 13 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.15 -2.79 5.10 30.59 0.16 -2.63 16 15 C -0.15 -2.65 9.70 71.98 0.70 -1.95 16 16 N -0.67 -19.93 5.32 -495.57 -2.63 -22.56 16 17 C 0.07 2.28 5.31 85.56 0.45 2.74 16 18 C 0.44 21.42 7.83 87.66 0.69 22.10 16 19 O -0.62 -34.56 15.90 -3.08 -0.05 -34.60 16 20 N -0.58 -30.51 5.29 -306.97 -1.62 -32.13 16 21 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 25 Si 0.99 43.78 29.55 68.60 2.03 45.80 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 2.34 6.49 -2.39 -0.02 2.33 16 34 H 0.30 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.42 12.74 7.87 -92.71 -0.73 12.01 16 36 H 0.06 1.54 6.61 -2.39 -0.02 1.52 16 37 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.06 1.26 6.23 -2.38 -0.01 1.25 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.84 6.87 -2.38 -0.02 0.83 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.35 10.70 7.29 -89.70 -0.65 10.04 16 44 H 0.09 3.08 6.22 -2.39 -0.01 3.07 16 45 H 0.07 2.15 6.48 -2.39 -0.02 2.14 16 46 H 0.39 20.06 7.90 -92.71 -0.73 19.33 16 47 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -76.30 392.26 -1.47 -77.77 By element: Atomic # 1 Polarization: 53.41 SS G_CDS: -1.08 Total: 52.33 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 7.55 Total: 27.42 kcal Atomic # 7 Polarization: -135.48 SS G_CDS: -9.86 Total: -145.34 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.11 Total: -57.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.30 -1.47 -77.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732194204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.830 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds