Wall clock time and date at job start Tue Mar 31 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30253 * 125.62145 * 2 1 4 4 C 1.34477 * 108.70258 * 179.73545 * 3 2 1 5 5 C 1.34326 * 107.66595 * 0.38789 * 4 3 2 6 6 C 1.50700 * 126.44321 * 179.87461 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.71455 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46796 * 55.00369 * 11 10 9 13 13 C 1.52999 * 109.47131 * 295.00471 * 11 10 9 14 14 C 1.52999 * 109.47469 * 175.00230 * 11 10 9 15 15 N 1.46904 * 109.47168 * 185.00312 * 14 11 10 16 16 C 1.46899 * 110.99863 * 179.97438 * 15 14 11 17 17 C 1.50690 * 109.47146 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00295 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00181 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00000 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99921 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00022 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99730 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47577 * 89.99848 * 24 22 20 26 26 H 1.48505 * 109.47138 * 209.99976 * 24 22 20 27 27 H 1.48499 * 109.47239 * 329.99401 * 24 22 20 28 28 O 1.33968 * 125.61866 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46947 * 270.02888 * 1 2 3 30 30 H 1.09001 * 109.47006 * 30.02955 * 1 2 3 31 31 H 1.08994 * 109.47366 * 150.02783 * 1 2 3 32 32 H 1.08004 * 126.16685 * 180.26827 * 4 3 2 33 33 H 1.09004 * 109.47210 * 329.71748 * 6 5 4 34 34 H 1.08994 * 109.47551 * 209.71400 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 37 37 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 38 38 H 1.09003 * 109.47088 * 60.00110 * 13 11 10 39 39 H 1.09001 * 109.46729 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.46866 * 299.99628 * 13 11 10 41 41 H 1.09007 * 109.46969 * 304.99985 * 14 11 10 42 42 H 1.08996 * 109.46836 * 65.00096 * 14 11 10 43 43 H 1.00904 * 110.99672 * 56.04754 * 15 14 11 44 44 H 1.09005 * 109.47218 * 299.99898 * 16 15 14 45 45 H 1.09001 * 109.46872 * 59.99845 * 16 15 14 46 46 H 0.96992 * 120.00129 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99630 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0059 5 6 3.5698 -0.6757 0.0009 6 6 4.7937 -1.5550 0.0019 7 6 5.2007 -1.8476 1.4231 8 8 4.5598 -1.3879 2.3444 9 7 6.2734 -2.6253 1.6703 10 6 6.6655 -2.9147 3.0519 11 6 7.9051 -3.8115 3.0530 12 1 8.6945 -3.3409 2.4667 13 6 7.5537 -5.1682 2.4392 14 6 8.3883 -4.0119 4.4908 15 7 9.6452 -4.7724 4.4835 16 6 10.1405 -4.9839 5.8502 17 6 11.4276 -5.7661 5.8026 18 8 11.8871 -6.1136 4.7352 19 7 12.0679 -6.0804 6.9462 20 6 13.2387 -6.7924 6.9029 21 1 13.6481 -7.1011 5.9523 22 6 13.8990 -7.1161 8.0819 23 7 15.0210 -7.7990 8.0404 24 14 13.1911 -6.5815 9.7258 25 1 12.2796 -7.6357 10.2386 26 1 14.2961 -6.3683 10.6947 27 1 12.4350 -5.3155 9.5510 28 8 2.2873 -1.0890 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.4157 1.3162 0.0115 33 1 5.6084 -1.0443 -0.5115 34 1 4.5699 -2.4899 -0.5117 35 1 6.7859 -2.9932 0.9335 36 1 6.8918 -1.9819 3.5684 37 1 5.8480 -3.4236 3.5625 38 1 7.2096 -5.0253 1.4149 39 1 8.4371 -5.8068 2.4397 40 1 6.7645 -5.6386 3.0255 41 1 8.5541 -3.0407 4.9571 42 1 7.6343 -4.5616 5.0541 43 1 10.3412 -4.3150 3.9137 44 1 10.3184 -4.0193 6.3256 45 1 9.3987 -5.5402 6.4233 46 1 11.7004 -5.8029 7.7998 47 1 15.4817 -8.0252 8.8634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732345648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:24 Heat of formation + Delta-G solvation = -86.851912 kcal Electronic energy + Delta-G solvation = -27458.849976 eV Core-core repulsion = 23255.892671 eV Total energy + Delta-G solvation = -4202.957305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.34624 -40.82975 -40.29496 -38.30779 -36.22344 -35.79369 -35.68959 -34.24512 -33.76281 -33.28179 -31.34484 -28.97299 -27.92992 -26.89429 -26.09824 -24.29793 -23.39818 -22.28237 -21.70748 -21.38004 -21.09361 -20.20384 -18.50172 -18.07947 -17.77259 -17.39629 -17.04486 -17.04058 -16.79306 -16.58479 -15.77896 -15.76373 -15.45478 -15.14351 -15.02413 -14.91396 -14.55994 -14.50811 -14.36301 -14.05219 -13.84044 -13.80931 -13.49135 -13.32629 -13.24938 -13.09252 -12.96379 -12.85073 -12.41124 -12.31593 -12.00560 -11.99700 -11.93144 -11.70017 -11.60280 -11.51034 -11.13844 -10.42905 -10.24398 -10.13686 -9.68380 -9.29242 -8.41236 -6.02015 0.37548 1.30404 1.35770 1.44410 1.54310 1.56946 1.69417 1.96300 2.22658 2.23511 2.76815 3.14991 3.15401 3.43017 3.58580 3.82627 3.88124 4.00318 4.04966 4.08185 4.14505 4.18681 4.38177 4.44267 4.51461 4.55498 4.61214 4.63806 4.66058 4.68437 4.77944 4.85179 4.98110 5.00564 5.02850 5.10690 5.27142 5.36888 5.42768 5.52854 5.56090 5.90828 6.04934 6.41099 6.49511 6.60110 6.70056 6.88410 7.18528 7.40337 7.96708 8.76388 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037603 B = 0.001369 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.450831 B =20446.322292 C =20788.290180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.183 3.817 3 N -0.520 5.520 4 C -0.044 4.044 5 C -0.041 4.041 6 C -0.048 4.048 7 C 0.511 3.489 8 O -0.586 6.586 9 N -0.710 5.710 10 C 0.131 3.869 11 C -0.087 4.087 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.066 3.934 15 N -0.680 5.680 16 C 0.061 3.939 17 C 0.449 3.551 18 O -0.613 6.613 19 N -0.592 5.592 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.232 1.232 28 O -0.212 6.212 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.167 0.833 34 H 0.142 0.858 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.345 0.655 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.389 0.611 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.396 16.070 -15.146 35.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 N -0.251 5.251 4 C -0.181 4.181 5 C -0.094 4.094 6 C -0.087 4.087 7 C 0.298 3.702 8 O -0.466 6.466 9 N -0.363 5.363 10 C 0.007 3.993 11 C -0.106 4.106 12 H 0.105 0.895 13 C -0.195 4.195 14 C -0.063 4.063 15 N -0.313 5.313 16 C -0.071 4.071 17 C 0.237 3.763 18 O -0.497 6.497 19 N -0.234 5.234 20 C -0.459 4.459 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.155 1.155 28 O -0.100 6.100 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.216 0.784 33 H 0.184 0.816 34 H 0.160 0.840 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.164 0.836 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.225 0.775 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.924 16.007 -15.139 36.359 hybrid contribution 1.327 -0.069 1.083 1.714 sum -27.597 15.938 -14.056 34.831 Atomic orbital electron populations 1.20527 0.78437 1.06633 1.05854 1.27220 0.98007 0.78117 0.98967 1.70427 1.03031 1.31436 1.20170 1.23397 0.95429 0.93650 1.05663 1.23025 0.83737 0.95240 1.07378 1.20239 0.92038 1.02175 0.94280 1.20858 0.79983 0.77787 0.91540 1.90756 1.54606 1.53203 1.48017 1.45811 1.29960 1.50900 1.09605 1.21242 0.96401 0.98746 0.82918 1.21210 0.96434 0.96460 0.96544 0.89517 1.21720 1.01463 0.95872 1.00438 1.21980 0.91399 0.96219 0.96744 1.60035 1.06922 1.54153 1.10176 1.21620 0.93418 0.99499 0.92558 1.20998 0.87790 0.84028 0.83513 1.90540 1.69739 1.58507 1.30956 1.42048 1.22290 1.51087 1.07949 1.19023 0.99929 1.31732 0.95198 0.92581 1.26088 0.95862 0.96339 1.02921 1.69802 1.17883 1.39461 1.30346 0.85378 0.79032 0.80376 0.76816 1.18243 1.20073 1.15483 1.84356 1.17187 1.38386 1.70065 0.87910 0.86915 0.87326 0.78444 0.81560 0.83982 0.74275 0.91953 0.92149 0.91413 0.92942 0.93226 0.93880 0.90272 0.83608 0.90675 0.87004 0.77506 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.18 3.36 8.34 88.34 0.74 4.09 16 3 N -0.52 -11.53 11.29 -303.83 -3.43 -14.96 16 4 C -0.04 -0.82 11.80 83.39 0.98 0.16 16 5 C -0.04 -0.69 5.88 24.79 0.15 -0.55 16 6 C -0.05 -0.39 6.25 29.10 0.18 -0.21 16 7 C 0.51 7.82 7.82 87.66 0.69 8.51 16 8 O -0.59 -15.56 16.03 -3.04 -0.05 -15.61 16 9 N -0.71 -7.55 5.28 -463.06 -2.45 -10.00 16 10 C 0.13 1.86 5.06 86.38 0.44 2.30 16 11 C -0.09 -1.24 2.57 -10.80 -0.03 -1.26 16 12 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 13 C -0.14 -2.15 8.95 71.98 0.64 -1.50 16 14 C 0.07 1.18 5.07 86.30 0.44 1.62 16 15 N -0.68 -17.94 5.58 -517.93 -2.89 -20.83 16 16 C 0.06 1.78 6.17 85.55 0.53 2.30 16 17 C 0.45 19.73 7.82 87.65 0.69 20.42 16 18 O -0.61 -33.17 15.78 -3.07 -0.05 -33.22 16 19 N -0.59 -27.51 5.09 -306.98 -1.56 -29.08 16 20 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 21 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.93 -56.06 13.96 21.66 0.30 -55.76 16 24 Si 0.96 38.48 27.74 68.60 1.90 40.38 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 28 O -0.21 -4.20 10.78 -3.71 -0.04 -4.24 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.17 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.42 1.81 7.65 -92.71 -0.71 1.10 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.73 7.18 -2.39 -0.02 0.71 16 39 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 40 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.35 9.67 8.43 -89.69 -0.76 8.91 16 44 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.39 14.95 5.76 -92.71 -0.53 14.42 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -90.63 400.56 -1.79 -92.43 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -1.04 Total: 33.28 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.51 Total: 17.59 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -10.03 Total: -130.61 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -0.14 Total: -53.07 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Total: -90.63 -1.79 -92.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732345648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.575 kcal (2) G-P(sol) polarization free energy of solvation -90.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds