Wall clock time and date at job start Tue Mar 31 2020 21:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.41270 * 128.07584 * 2 1 4 4 N 1.30136 * 106.58930 * 180.24410 * 3 2 1 5 5 O 1.20881 * 111.98029 * 359.76571 * 4 3 2 6 6 C 1.34644 * 111.47093 * 359.97438 * 5 4 3 7 7 C 1.47510 * 126.94487 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00403 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99963 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00231 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47633 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47223 * 295.00672 * 11 10 9 13 13 N 1.46904 * 109.46882 * 54.99792 * 11 10 9 14 14 C 1.46900 * 110.99611 * 61.50884 * 13 11 10 15 15 C 1.50709 * 109.46921 * 185.78229 * 14 13 11 16 16 O 1.21286 * 120.00050 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99686 * 179.72555 * 15 14 13 18 18 C 1.37099 * 120.00134 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99173 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00280 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46888 * 90.00305 * 22 20 18 24 24 H 1.48497 * 109.47386 * 209.99895 * 22 20 18 25 25 H 1.48496 * 109.47356 * 330.00555 * 22 20 18 26 26 C 1.52990 * 109.47464 * 174.99982 * 11 10 9 27 27 C 1.53005 * 109.47032 * 64.63464 * 26 11 10 28 28 C 1.53007 * 109.47361 * 184.63102 * 26 11 10 29 29 H 1.09002 * 109.47632 * 270.13939 * 1 2 3 30 30 H 1.09003 * 109.47070 * 30.14118 * 1 2 3 31 31 H 1.09001 * 109.46734 * 150.13930 * 1 2 3 32 32 H 1.08001 * 126.70597 * 0.02562 * 3 2 1 33 33 H 0.97003 * 120.00408 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.46781 * 59.99955 * 10 9 7 35 35 H 1.09001 * 109.47036 * 300.00685 * 10 9 7 36 36 H 1.00903 * 111.00357 * 185.46080 * 13 11 10 37 37 H 1.09003 * 109.47190 * 65.78562 * 14 13 11 38 38 H 1.08993 * 109.47384 * 305.78541 * 14 13 11 39 39 H 0.97010 * 120.00182 * 0.02562 * 17 15 14 40 40 H 0.96996 * 120.00087 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47414 * 304.63321 * 26 11 10 42 42 H 1.09004 * 109.46991 * 59.99946 * 27 26 11 43 43 H 1.09006 * 109.47191 * 179.97438 * 27 26 11 44 44 H 1.08996 * 109.46984 * 300.00214 * 27 26 11 45 45 H 1.09000 * 109.46825 * 63.44272 * 28 26 11 46 46 H 1.08999 * 109.46867 * 183.44238 * 28 26 11 47 47 H 1.08994 * 109.46919 * 303.44706 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3781 1.1121 0.0000 4 7 3.5891 0.6354 -0.0053 5 8 3.5995 -0.5734 -0.0039 6 6 2.3508 -1.0770 0.0033 7 6 1.9695 -2.5019 0.0064 8 8 0.7953 -2.8171 0.0126 9 7 2.9229 -3.4546 0.0025 10 6 2.5443 -4.8699 0.0062 11 6 3.8058 -5.7354 0.0011 12 1 4.3466 -5.5840 -0.9331 13 7 4.6646 -5.3558 1.1310 14 6 3.9802 -5.5807 2.4112 15 6 4.8315 -5.0502 3.5359 16 8 5.9027 -4.5351 3.2947 17 7 4.3997 -5.1429 4.8093 18 6 5.1739 -4.6598 5.8325 19 1 6.1299 -4.2055 5.6181 20 6 4.7285 -4.7548 7.1452 21 7 3.5655 -5.3081 7.4061 22 14 5.7837 -4.0973 8.5393 23 1 5.4431 -2.6736 8.7888 24 1 5.5292 -4.8899 9.7690 25 1 7.2175 -4.2055 8.1685 26 6 3.4142 -7.2087 0.1307 27 6 2.6165 -7.6347 -1.1035 28 6 4.6776 -8.0645 0.2418 29 1 -0.3634 0.0025 1.0276 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5117 32 1 2.0947 2.1542 0.0004 33 1 3.8598 -3.2033 -0.0021 34 1 1.9493 -5.0891 -0.8804 35 1 1.9587 -5.0870 0.8996 36 1 5.5436 -5.8502 1.0992 37 1 3.8158 -6.6490 2.5526 38 1 3.0210 -5.0632 2.4062 39 1 3.5411 -5.5513 5.0018 40 1 3.2547 -5.3748 8.3225 41 1 2.8033 -7.3451 1.0231 42 1 3.2274 -7.4983 -1.9958 43 1 2.3378 -8.6845 -1.0114 44 1 1.7165 -7.0251 -1.1826 45 1 5.2145 -7.8030 1.1536 46 1 4.4010 -9.1184 0.2726 47 1 5.3173 -7.8817 -0.6216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732575397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:25 Heat of formation + Delta-G solvation = -41.455766 kcal Electronic energy + Delta-G solvation = -29929.434378 eV Core-core repulsion = 25728.445598 eV Total energy + Delta-G solvation = -4200.988780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.04676 -41.04741 -40.21903 -39.03178 -36.04468 -35.94356 -35.25261 -34.01384 -33.38899 -33.21244 -30.30203 -29.13200 -28.54622 -27.28547 -26.13733 -25.00880 -23.72652 -22.75607 -21.77825 -21.38900 -20.45933 -19.91549 -19.31317 -18.83195 -18.28470 -17.26769 -17.19882 -16.79073 -16.44983 -16.15226 -15.91272 -15.82333 -15.62517 -15.13098 -15.07407 -14.83110 -14.45678 -14.19724 -14.17176 -13.99376 -13.61425 -13.60137 -13.55215 -13.44418 -13.10552 -12.92691 -12.86135 -12.42908 -12.35799 -12.29028 -12.13098 -12.10019 -11.72847 -11.50617 -11.49846 -11.45019 -11.37614 -10.59464 -10.33346 -10.07988 -10.00446 -9.29838 -8.46518 -5.94980 -0.29099 1.06242 1.36833 1.40363 1.52953 1.55458 1.89057 2.06973 2.20109 2.28892 2.94797 3.19095 3.20929 3.50404 3.59618 3.67531 3.73513 3.92286 3.99043 4.07986 4.27850 4.30812 4.31671 4.42345 4.43597 4.52710 4.70947 4.73393 4.75020 4.80066 4.84022 4.91258 4.93300 5.04253 5.08714 5.19327 5.27289 5.32372 5.40755 5.41734 5.49654 5.87644 6.08813 6.28701 6.41574 6.60404 6.89146 7.02558 7.13392 7.57439 8.12843 8.70988 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.003794 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.058342 B = 7378.616091 C =10037.730646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.123 4.123 3 C -0.004 4.004 4 N -0.368 5.368 5 O 0.101 5.899 6 C -0.110 4.110 7 C 0.602 3.398 8 O -0.541 6.541 9 N -0.692 5.692 10 C 0.124 3.876 11 C 0.087 3.913 12 H 0.112 0.888 13 N -0.668 5.668 14 C 0.064 3.936 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.149 4.149 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.418 0.582 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.353 0.647 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.394 0.606 40 H 0.277 0.723 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 1.548 -19.304 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.181 4.181 4 N -0.071 5.071 5 O 0.031 5.969 6 C -0.176 4.176 7 C 0.386 3.614 8 O -0.420 6.420 9 N -0.342 5.342 10 C 0.000 4.000 11 C -0.023 4.023 12 H 0.130 0.870 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.146 4.146 27 C -0.200 4.200 28 C -0.206 4.206 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.255 0.745 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.777 2.809 -19.316 20.662 hybrid contribution -0.114 -0.837 1.351 1.593 sum -6.892 1.972 -17.965 19.342 Atomic orbital electron populations 1.20390 0.84743 1.04886 1.03885 1.22066 1.00119 0.89993 1.00566 1.25635 0.86642 1.03568 1.02297 1.73769 1.24627 0.91342 1.17314 1.84973 1.28427 1.15723 1.67782 1.24166 0.85140 0.96640 1.11619 1.16577 0.85568 0.81992 0.77292 1.90806 1.17904 1.81086 1.52201 1.45778 1.10259 1.06355 1.71809 1.21700 0.96991 0.78343 1.02917 1.22020 0.92920 0.92398 0.94998 0.86975 1.60154 1.06692 1.63176 1.00016 1.21509 0.96913 0.99833 0.88565 1.20907 0.88213 0.83981 0.84219 1.90493 1.25755 1.49872 1.84220 1.41949 1.20351 1.53896 1.05160 1.19649 1.02704 1.37347 0.86442 0.90349 1.26002 0.97739 0.97181 1.00303 1.69673 1.20070 1.44505 1.21996 0.84967 0.78201 0.78243 0.77184 1.19911 1.19472 1.19638 1.21752 0.97969 0.94530 1.00322 1.21822 0.99870 1.01651 0.96674 1.21841 0.97050 1.00097 1.01642 0.89911 0.87693 0.90469 0.74789 0.74527 0.88688 0.92136 0.82584 0.91435 0.89025 0.77261 0.91382 0.91431 0.91473 0.92140 0.92072 0.94246 0.91616 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.95 71.23 0.71 -0.70 16 2 C -0.12 -2.75 6.37 -19.45 -0.12 -2.87 16 3 C 0.00 -0.08 12.14 85.69 1.04 0.96 16 4 N -0.37 -10.05 12.04 -58.54 -0.70 -10.76 16 5 O 0.10 2.89 11.04 65.81 0.73 3.62 16 6 C -0.11 -2.96 7.29 24.38 0.18 -2.78 16 7 C 0.60 16.63 7.82 86.69 0.68 17.31 16 8 O -0.54 -16.61 15.12 -3.98 -0.06 -16.67 16 9 N -0.69 -16.92 5.39 -466.30 -2.51 -19.44 16 10 C 0.12 2.59 4.34 86.38 0.37 2.96 16 11 C 0.09 1.63 2.29 44.91 0.10 1.74 16 12 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 13 N -0.67 -18.15 5.21 -495.59 -2.58 -20.74 16 14 C 0.06 2.11 5.16 85.56 0.44 2.55 16 15 C 0.44 20.64 7.84 87.66 0.69 21.32 16 16 O -0.62 -33.54 15.90 -3.05 -0.05 -33.59 16 17 N -0.58 -29.78 5.29 -306.99 -1.62 -31.41 16 18 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 22 Si 0.99 43.56 29.55 68.60 2.03 45.58 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.12 -2.07 1.94 -10.79 -0.02 -2.09 16 27 C -0.14 -1.81 8.94 71.98 0.64 -1.17 16 28 C -0.15 -2.52 8.57 71.98 0.62 -1.90 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.55 6.74 -2.39 -0.02 1.53 16 32 H 0.24 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.42 10.37 7.97 -92.71 -0.74 9.64 16 34 H 0.10 1.69 6.81 -2.39 -0.02 1.67 16 35 H 0.06 1.45 6.58 -2.39 -0.02 1.44 16 36 H 0.35 9.94 7.11 -89.69 -0.64 9.30 16 37 H 0.07 1.98 6.31 -2.39 -0.02 1.97 16 38 H 0.09 2.95 6.16 -2.39 -0.01 2.94 16 39 H 0.39 19.57 7.90 -92.70 -0.73 18.84 16 40 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.07 1.28 6.78 -2.39 -0.02 1.27 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 0.76 6.67 -2.39 -0.02 0.75 16 45 H 0.04 0.83 6.43 -2.39 -0.02 0.81 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.90 387.69 1.05 -70.85 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -1.06 Total: 45.77 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.61 Total: 16.89 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -7.14 Total: -132.44 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: 0.62 Total: -46.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.90 1.05 -70.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732575397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.398 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds