Wall clock time and date at job start Tue Mar 31 2020 20:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34262 * 126.52634 * 2 1 4 4 C 1.34046 * 108.22699 * 179.97438 * 3 2 1 5 5 N 1.29932 * 109.24559 * 359.97438 * 4 3 2 6 6 C 1.36068 * 108.47732 * 359.75439 * 5 4 3 7 7 C 1.47414 * 126.45026 * 180.28617 * 6 5 4 8 8 O 1.21617 * 120.00173 * 175.17249 * 7 6 5 9 9 N 1.34781 * 120.00232 * 355.16898 * 7 6 5 10 10 C 1.46498 * 119.99767 * 2.60067 * 9 7 6 11 11 C 1.46497 * 120.00001 * 182.59967 * 9 7 6 12 12 C 1.53007 * 109.47301 * 90.00084 * 11 9 7 13 13 C 1.52993 * 109.47147 * 179.97438 * 12 11 9 14 14 N 1.46906 * 109.46844 * 179.97438 * 13 12 11 15 15 C 1.46899 * 110.99657 * 66.05133 * 14 13 12 16 16 C 1.46903 * 110.99773 * 190.00272 * 14 13 12 17 17 C 1.50697 * 109.47107 * 170.00121 * 16 14 13 18 18 O 1.21300 * 119.99895 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00226 * 179.97438 * 17 16 14 20 20 C 1.37101 * 120.00000 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99888 * 0.02562 * 20 19 17 22 22 C 1.38942 * 119.99712 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00274 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99936 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47177 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47186 * 119.99504 * 24 22 20 27 27 H 1.48504 * 109.47140 * 239.99842 * 24 22 20 28 28 H 1.09005 * 109.47119 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47081 * 120.02602 * 1 2 3 30 30 H 1.08999 * 109.47102 * 240.02920 * 1 2 3 31 31 H 1.08001 * 125.37799 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47022 * 83.88099 * 10 9 7 33 33 H 1.08999 * 109.47152 * 203.88031 * 10 9 7 34 34 H 1.09002 * 109.46941 * 323.88167 * 10 9 7 35 35 H 1.09001 * 109.47288 * 209.99929 * 11 9 7 36 36 H 1.09005 * 109.47224 * 330.00272 * 11 9 7 37 37 H 1.09001 * 109.46823 * 300.00130 * 12 11 9 38 38 H 1.09000 * 109.46370 * 59.99949 * 12 11 9 39 39 H 1.08994 * 109.47371 * 299.99985 * 13 12 11 40 40 H 1.09005 * 109.46910 * 60.00474 * 13 12 11 41 41 H 1.08994 * 109.47191 * 59.99861 * 15 14 13 42 42 H 1.09004 * 109.46885 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.47132 * 299.99803 * 15 14 13 44 44 H 1.08996 * 109.47211 * 290.00087 * 16 14 13 45 45 H 1.09006 * 109.47241 * 50.00092 * 16 14 13 46 46 H 0.96995 * 119.99750 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6580 0.0006 5 7 3.6002 -0.6411 0.0015 6 6 2.3170 -1.0936 0.0070 7 6 1.8853 -2.5031 0.0158 8 8 0.7040 -2.7768 0.1088 9 7 2.7999 -3.4886 -0.0793 10 6 4.2267 -3.1610 -0.1340 11 6 2.3670 -4.8873 -0.1280 12 6 2.1446 -5.3021 -1.5839 13 6 1.6932 -6.7630 -1.6348 14 7 1.4791 -7.1609 -3.0326 15 6 2.7438 -7.1597 -3.7799 16 6 0.8220 -8.4724 -3.1118 17 6 0.3985 -8.7370 -4.5337 18 8 0.6225 -7.9142 -5.3963 19 7 -0.2282 -9.8883 -4.8470 20 6 -0.6140 -10.1287 -6.1405 21 1 -0.4153 -9.3957 -6.9084 22 6 -1.2605 -11.3154 -6.4634 23 7 -1.5018 -12.2075 -5.5291 24 14 -1.7855 -11.6434 -8.2259 25 1 -1.4001 -10.4912 -9.0797 26 1 -1.1160 -12.8729 -8.7212 27 1 -3.2583 -11.8265 -8.2778 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5134 0.8902 31 1 4.4489 1.2978 0.0011 32 1 4.6071 -3.0243 0.8783 33 1 4.7677 -3.9736 -0.6188 34 1 4.3668 -2.2413 -0.7020 35 1 3.1343 -5.5208 0.3170 36 1 1.4361 -4.9992 0.4279 37 1 1.3773 -4.6686 -2.0289 38 1 3.0756 -5.1902 -2.1397 39 1 2.4608 -7.3962 -1.1899 40 1 0.7624 -6.8752 -1.0788 41 1 3.4387 -7.8618 -3.3191 42 1 2.5567 -7.4584 -4.8113 43 1 3.1746 -6.1586 -3.7635 44 1 1.5175 -9.2473 -2.7897 45 1 -0.0548 -8.4792 -2.4643 46 1 -0.4070 -10.5464 -4.1573 47 1 -1.9536 -13.0358 -5.7545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733768912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:44 Heat of formation + Delta-G solvation = -55.393239 kcal Electronic energy + Delta-G solvation = -28631.245290 eV Core-core repulsion = 24429.652135 eV Total energy + Delta-G solvation = -4201.593155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.45764 -40.84359 -40.35401 -38.25861 -36.86955 -35.97447 -35.78780 -33.42763 -33.30810 -32.98956 -29.50190 -28.69581 -28.10818 -27.20938 -26.56702 -24.99152 -23.82929 -22.70318 -21.82724 -21.00080 -20.68474 -19.84837 -18.67334 -17.95505 -17.88492 -17.49422 -17.04197 -16.69076 -16.58161 -16.49038 -16.07351 -15.80509 -15.64877 -15.33353 -15.05669 -14.84633 -14.57422 -14.38428 -14.13530 -13.85351 -13.76515 -13.70166 -13.49216 -13.20078 -13.07791 -12.98220 -12.84172 -12.70321 -12.51392 -12.41057 -12.37307 -12.32092 -12.11430 -11.56605 -11.52531 -11.46086 -11.07248 -10.28719 -10.06773 -9.99609 -9.61214 -9.17135 -8.46327 -5.94901 0.03302 1.05559 1.36272 1.41119 1.55546 1.57233 1.94103 2.05838 2.19113 2.28882 2.80270 3.06936 3.20373 3.43283 3.61331 3.66887 3.93793 4.08843 4.16079 4.21722 4.32827 4.35078 4.41246 4.43007 4.47048 4.53955 4.55499 4.60442 4.61011 4.69902 4.73317 4.83695 4.86305 4.95016 5.06794 5.10508 5.14330 5.26127 5.36949 5.41654 5.58586 5.90027 6.09089 6.21000 6.25677 6.47674 6.61599 7.01637 7.13652 7.57121 8.13460 8.71366 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.001760 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.439452 B =15900.957568 C =16320.803125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.041 3.959 3 O -0.200 6.200 4 C 0.192 3.808 5 N -0.483 5.483 6 C -0.105 4.105 7 C 0.588 3.412 8 O -0.565 6.565 9 N -0.601 5.601 10 C 0.076 3.924 11 C 0.121 3.879 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.545 5.545 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.304 0.696 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.958 23.293 17.949 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.016 4.016 3 O -0.086 6.086 4 C -0.036 4.036 5 N -0.211 5.211 6 C -0.223 4.223 7 C 0.377 3.623 8 O -0.444 6.444 9 N -0.331 5.331 10 C -0.066 4.066 11 C -0.002 4.002 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.270 5.270 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.319 0.681 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.662 23.464 17.211 31.734 hybrid contribution -0.375 -0.905 -0.338 1.037 sum 12.287 22.558 16.872 30.733 Atomic orbital electron populations 1.20501 0.81693 1.05330 1.04984 1.24015 0.96010 0.83367 0.98206 1.84420 1.19216 1.35663 1.69332 1.29326 0.85714 0.91274 0.97243 1.70875 1.20491 1.11077 1.18707 1.21377 0.90153 0.95036 1.15703 1.17152 0.85078 0.83720 0.76393 1.90793 1.17597 1.83785 1.52271 1.47747 1.08228 1.06077 1.71076 1.22277 0.77858 1.03418 1.03016 1.21515 1.02174 0.80335 0.96164 1.21779 1.01287 0.95545 0.96928 1.22076 1.01496 0.95526 0.87439 1.61467 1.24737 1.27325 1.13421 1.22405 0.89145 1.01407 0.98934 1.21734 1.00649 0.91400 0.93495 1.20821 0.82465 0.82352 0.91567 1.90462 1.60405 1.47462 1.51866 1.41942 1.52083 1.17309 1.09919 1.19685 1.36305 1.03471 0.86631 0.90438 1.26045 0.96750 0.94850 1.03768 1.69682 1.42419 1.09376 1.34709 0.84865 0.78174 0.78160 0.77082 1.19900 1.19478 1.19627 0.87742 0.89183 0.88521 0.68086 0.92011 0.90105 0.88545 0.87345 0.90591 0.93922 0.91289 0.92468 0.90243 0.94791 0.92920 0.90654 0.91141 0.87462 0.77006 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.15 71.23 0.65 -0.36 16 2 C 0.04 0.74 7.44 25.19 0.19 0.93 16 3 O -0.20 -2.68 10.73 0.38 0.00 -2.68 16 4 C 0.19 1.75 13.19 130.52 1.72 3.48 16 5 N -0.48 -7.84 7.85 -305.16 -2.39 -10.24 16 6 C -0.10 -2.24 6.67 40.41 0.27 -1.97 16 7 C 0.59 15.06 7.67 86.66 0.66 15.72 16 8 O -0.56 -17.43 15.18 -4.08 -0.06 -17.49 16 9 N -0.60 -12.75 2.87 -850.65 -2.44 -15.20 16 10 C 0.08 1.18 9.59 127.77 1.23 2.41 16 11 C 0.12 2.38 5.40 86.38 0.47 2.85 16 12 C -0.12 -2.77 5.46 30.59 0.17 -2.61 16 13 C 0.06 1.55 4.96 86.30 0.43 1.98 16 14 N -0.54 -18.68 4.50 -927.05 -4.17 -22.85 16 15 C 0.03 0.96 8.96 127.69 1.14 2.11 16 16 C 0.06 2.12 5.45 85.56 0.47 2.59 16 17 C 0.44 21.81 7.47 87.66 0.66 22.46 16 18 O -0.62 -35.29 13.91 -3.09 -0.04 -35.33 16 19 N -0.57 -30.39 5.29 -306.98 -1.62 -32.02 16 20 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 23 N -0.92 -50.52 13.05 21.66 0.28 -50.24 16 24 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.50 8.00 -2.39 -0.02 1.48 16 31 H 0.30 -1.00 8.06 -2.91 -0.02 -1.03 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.99 8.03 -2.39 -0.02 0.97 16 34 H 0.10 1.63 5.33 -2.39 -0.01 1.62 16 35 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 36 H 0.08 1.70 7.39 -2.38 -0.02 1.68 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.57 6.55 -2.39 -0.02 1.55 16 39 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 40 H 0.08 1.92 7.93 -2.38 -0.02 1.90 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 2.21 5.82 -2.38 -0.01 2.19 16 43 H 0.07 2.21 6.47 -2.39 -0.02 2.19 16 44 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 45 H 0.11 3.49 7.93 -2.38 -0.02 3.47 16 46 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -79.82 390.73 1.17 -78.65 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.27 Total: 30.74 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 9.33 Total: 30.78 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -10.35 Total: -130.54 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.10 Total: -55.50 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -79.82 1.17 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733768912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.252 kcal (2) G-P(sol) polarization free energy of solvation -79.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds