Wall clock time and date at job start Tue Mar 31 2020 21:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47046 * 269.97597 * 6 5 4 8 8 C 1.50706 * 109.47046 * 179.97438 * 7 6 5 9 9 O 1.21273 * 119.99683 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.62935 * 359.71698 * 10 8 7 12 12 C 1.52765 * 109.00908 * 233.58252 * 11 10 8 13 13 C 1.53034 * 109.38210 * 305.59276 * 12 11 10 14 14 O 1.42895 * 109.45136 * 301.22208 * 13 12 11 15 15 C 1.53004 * 109.45883 * 181.25932 * 13 12 11 16 16 N 1.46498 * 109.47279 * 59.93185 * 15 13 12 17 17 C 1.36933 * 119.99945 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00233 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00040 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00192 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47447 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47424 * 120.00099 * 21 19 17 24 24 H 1.48497 * 109.47561 * 240.00153 * 21 19 17 25 25 C 1.53042 * 109.54197 * 61.23755 * 13 12 11 26 26 C 1.46919 * 120.63159 * 179.97438 * 10 8 7 27 27 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 28 28 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 31 31 H 1.09002 * 109.46756 * 29.97587 * 6 5 4 32 32 H 1.09001 * 109.47141 * 149.96983 * 6 5 4 33 33 H 1.09002 * 109.47334 * 299.99636 * 7 6 5 34 34 H 1.09001 * 109.47652 * 59.99698 * 7 6 5 35 35 H 1.09000 * 109.59296 * 353.42000 * 11 10 8 36 36 H 1.09000 * 109.58827 * 113.84821 * 11 10 8 37 37 H 1.08996 * 109.56351 * 185.55354 * 12 11 10 38 38 H 1.09000 * 109.35831 * 65.50150 * 12 11 10 39 39 H 0.96704 * 114.00196 * 300.06432 * 14 13 12 40 40 H 1.09002 * 109.47034 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46979 * 299.93025 * 15 13 12 42 42 H 0.96999 * 120.00060 * 359.97438 * 16 15 13 43 43 H 0.96994 * 119.99906 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.50216 * 178.68097 * 25 13 12 45 45 H 1.09003 * 109.49236 * 58.58532 * 25 13 12 46 46 H 1.09001 * 109.58941 * 246.15731 * 26 10 8 47 47 H 1.09006 * 109.58709 * 6.57997 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2255 -1.7134 -1.4422 8 6 6.4930 -2.5287 -1.4422 9 8 7.0034 -2.8560 -0.3920 10 7 7.0597 -2.8932 -2.6095 11 6 6.4502 -2.5086 -3.8898 12 6 6.2488 -3.7609 -4.7412 13 6 7.5804 -4.5029 -4.8762 14 8 8.5476 -3.6392 -5.4766 15 6 7.3874 -5.7407 -5.7546 16 7 6.9187 -5.3303 -7.0805 17 6 6.6747 -6.2737 -8.0426 18 1 6.8274 -7.3202 -7.8239 19 6 6.2301 -5.8849 -9.2989 20 7 6.0436 -4.6095 -9.5654 21 14 5.8979 -7.1716 -10.6116 22 1 6.1833 -8.5222 -10.0644 23 1 4.4744 -7.0976 -11.0284 24 1 6.7711 -6.9181 -11.7856 25 6 8.0701 -4.9319 -3.4912 26 6 8.2955 -3.6876 -2.6258 27 7 2.3030 -1.0840 0.0048 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.5844 -0.8852 0.5139 32 1 4.6208 -2.3818 0.5144 33 1 4.4381 -2.2651 -1.9558 34 1 5.4017 -0.7685 -1.9563 35 1 5.4863 -2.0334 -3.7077 36 1 7.1082 -1.8157 -4.4143 37 1 5.8890 -3.4762 -5.7299 38 1 5.5174 -4.4107 -4.2606 39 1 8.3028 -3.3275 -6.3587 40 1 8.3359 -6.2690 -5.8512 41 1 6.6501 -6.3999 -5.2965 42 1 6.7806 -4.3905 -7.2767 43 1 5.7325 -4.3378 -10.4430 44 1 9.0067 -5.4806 -3.5902 45 1 7.3215 -5.5706 -3.0224 46 1 9.1069 -3.0926 -3.0451 47 1 8.5489 -3.9901 -1.6096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733889976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:57 Heat of formation + Delta-G solvation = -10.383311 kcal Electronic energy + Delta-G solvation = -29409.101394 eV Core-core repulsion = 25209.460016 eV Total energy + Delta-G solvation = -4199.641378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.90363 -40.50209 -38.67222 -36.45372 -35.65762 -35.00178 -34.05609 -32.39690 -31.76506 -31.05185 -30.40131 -29.48234 -27.16830 -25.84347 -23.98604 -23.58777 -23.37466 -21.98369 -21.44064 -20.26042 -19.06524 -18.39419 -17.89396 -17.57150 -17.24471 -16.26257 -15.98176 -15.62985 -15.14556 -15.00188 -14.60905 -14.38902 -14.19820 -14.10571 -13.96100 -13.70905 -13.38423 -13.23848 -13.13490 -12.98707 -12.74777 -12.65844 -12.50326 -12.32576 -11.93199 -11.72013 -11.60466 -11.54530 -11.34360 -11.14675 -11.10050 -11.05950 -10.89576 -10.35559 -10.25519 -10.15124 -9.92292 -9.73744 -9.47870 -8.99879 -8.64917 -7.06127 -5.88811 -3.17761 0.79315 1.87655 2.39881 2.45142 2.91112 3.31520 3.36931 3.43507 3.45087 3.70902 4.21747 4.39707 4.47275 4.51386 4.57969 4.66206 4.77132 4.95282 5.00338 5.02339 5.03872 5.08091 5.13047 5.21971 5.34810 5.36398 5.46219 5.48411 5.50620 5.56358 5.58232 5.69057 5.75429 5.83054 5.92534 5.98146 6.06196 6.26507 6.32412 6.49153 6.62450 6.65206 7.29033 7.61322 7.84313 7.98824 8.02572 8.30316 9.41173 9.94385 10.28433 11.34039 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002352 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.833360 B =11904.185318 C =13557.352000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.387 5.387 4 O 0.077 5.923 5 C 0.187 3.813 6 C -0.011 4.011 7 C -0.140 4.140 8 C 0.520 3.480 9 O -0.547 6.547 10 N -0.603 5.603 11 C 0.109 3.891 12 C -0.159 4.159 13 C 0.130 3.870 14 O -0.561 6.561 15 C 0.128 3.872 16 N -0.729 5.729 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.117 4.117 26 C 0.118 3.882 27 N -0.480 5.480 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.383 0.617 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.380 0.620 43 H 0.256 0.744 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 9.339 19.310 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.096 5.096 4 O 0.019 5.981 5 C -0.033 4.033 6 C -0.051 4.051 7 C -0.181 4.181 8 C 0.308 3.692 9 O -0.426 6.426 10 N -0.336 5.336 11 C -0.013 4.013 12 C -0.197 4.197 13 C 0.089 3.911 14 O -0.368 6.368 15 C 0.000 4.000 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.156 4.156 26 C -0.004 4.004 27 N -0.214 5.214 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.214 0.786 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.417 9.408 20.345 22.846 hybrid contribution -0.571 -0.381 -1.695 1.829 sum -4.988 9.027 18.649 21.311 Atomic orbital electron populations 1.20157 0.82873 1.04662 1.04484 1.25950 1.00688 0.83485 1.00370 1.74656 0.89397 1.23927 1.21634 1.85302 1.22365 1.24814 1.65583 1.28830 0.96991 0.82160 0.95365 1.19971 0.87806 0.99093 0.98184 1.21674 0.97205 1.02181 0.97065 1.20237 0.85359 0.80108 0.83498 1.90699 1.64535 1.56542 1.30814 1.48119 1.26308 1.53309 1.05836 1.21710 0.98313 0.97687 0.83612 1.22480 0.98682 0.97034 1.01518 1.21285 0.87183 0.90187 0.92468 1.86371 1.47135 1.67121 1.36167 1.21317 0.97438 0.94135 0.87067 1.42285 1.80336 1.06857 1.08039 1.19246 1.37140 0.89268 0.91440 0.91077 1.24732 1.02129 0.96182 0.97770 1.69635 1.52762 1.13744 1.22117 0.86101 0.77521 0.80570 0.81885 1.20549 1.21833 1.21785 1.21862 1.02785 0.97432 0.93488 1.21558 0.85710 0.92066 1.01044 1.71941 0.99730 1.29375 1.20337 0.89157 0.88957 0.89525 0.87016 0.86232 0.87682 0.87943 0.90086 0.90365 0.88921 0.90780 0.76780 0.95327 0.95673 0.78560 0.93455 0.89905 0.90434 0.90492 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.17 1.72 8.22 -156.37 -1.28 0.44 16 3 N -0.39 -4.39 12.16 30.90 0.38 -4.01 16 4 O 0.08 0.80 11.31 18.11 0.20 1.01 16 5 C 0.19 1.76 7.77 -13.05 -0.10 1.66 16 6 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 7 C -0.14 -1.10 4.03 -27.88 -0.11 -1.21 16 8 C 0.52 5.72 7.70 -10.98 -0.08 5.63 16 9 O -0.55 -7.51 15.39 5.56 0.09 -7.43 16 10 N -0.60 -6.79 2.98 -173.01 -0.52 -7.30 16 11 C 0.11 1.16 6.08 -3.93 -0.02 1.14 16 12 C -0.16 -2.12 4.91 -26.83 -0.13 -2.25 16 13 C 0.13 1.91 0.71 -90.58 -0.06 1.85 16 14 O -0.56 -8.63 11.70 -35.23 -0.41 -9.04 16 15 C 0.13 2.40 5.40 -4.04 -0.02 2.38 16 16 N -0.73 -16.83 5.07 -59.91 -0.30 -17.14 16 17 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.12 -1.49 5.11 -26.59 -0.14 -1.62 16 26 C 0.12 1.41 6.20 -3.70 -0.02 1.39 16 27 N -0.48 -5.22 11.55 -9.87 -0.11 -5.34 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.12 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.10 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.10 0.66 7.95 -51.93 -0.41 0.24 16 35 H 0.08 0.69 5.94 -51.93 -0.31 0.38 16 36 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 37 H 0.09 1.41 6.82 -51.93 -0.35 1.06 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.38 5.95 7.85 45.56 0.36 6.31 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.38 8.87 5.58 -40.82 -0.23 8.64 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 47 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -32.52 383.26 -7.48 -40.01 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.29 Total: 10.52 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.99 Total: 2.18 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.17 Total: -59.71 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.12 Total: -15.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.52 -7.48 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733889976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.624 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds