Wall clock time and date at job start Tue Mar 31 2020 22:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50689 * 109.47324 * 2 1 4 4 O 1.34261 * 126.52870 * 269.97868 * 3 2 1 5 5 C 1.34050 * 108.23012 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47641 * 359.61142 * 6 5 4 8 8 C 1.47424 * 126.45045 * 180.14954 * 7 6 5 9 9 O 1.21616 * 120.00218 * 180.26938 * 8 7 6 10 10 N 1.34777 * 119.99756 * 0.27770 * 8 7 6 11 11 C 1.46496 * 119.99954 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47592 * 34.99843 * 11 10 8 13 13 C 1.52997 * 109.47109 * 274.99908 * 11 10 8 14 14 C 1.53002 * 109.47201 * 154.99894 * 11 10 8 15 15 H 1.08999 * 109.47026 * 294.99696 * 14 11 10 16 16 C 1.52994 * 109.47044 * 54.99992 * 14 11 10 17 17 N 1.46905 * 109.47028 * 174.99969 * 14 11 10 18 18 C 1.46906 * 110.99806 * 154.99969 * 17 14 11 19 19 C 1.50696 * 109.46964 * 179.97438 * 18 17 14 20 20 O 1.21291 * 120.00206 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00028 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00412 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00032 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00537 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99647 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00387 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46799 * 60.00132 * 26 24 22 28 28 H 1.48499 * 109.47383 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47101 * 300.00382 * 26 24 22 30 30 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46472 * 299.99408 * 1 2 3 32 32 H 1.08996 * 109.47201 * 59.99488 * 1 2 3 33 33 H 1.09008 * 109.46797 * 239.99900 * 2 1 3 34 34 H 1.09004 * 109.46913 * 120.00721 * 2 1 3 35 35 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 36 36 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.47271 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47572 * 299.99831 * 13 11 10 39 39 H 1.08999 * 109.47612 * 60.00126 * 13 11 10 40 40 H 1.08999 * 109.47304 * 300.00040 * 16 14 11 41 41 H 1.08999 * 109.47450 * 59.99964 * 16 14 11 42 42 H 1.09004 * 109.47387 * 179.97438 * 16 14 11 43 43 H 1.00893 * 110.99928 * 31.04940 * 17 14 11 44 44 H 1.09003 * 109.47007 * 300.00416 * 18 17 14 45 45 H 1.09003 * 109.46792 * 59.99637 * 18 17 14 46 46 H 0.97007 * 119.99898 * 0.02562 * 21 19 18 47 47 H 0.97000 * 120.00187 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7238 3.3738 -0.6580 6 7 2.7357 3.3923 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1584 1.7774 2.5032 9 8 1.7628 0.6603 2.7763 10 7 2.4649 2.6435 3.4893 11 6 2.3211 2.2394 4.8901 12 1 2.5723 1.1836 4.9913 13 6 0.8765 2.4653 5.3404 14 6 3.2630 3.0734 5.7608 15 1 4.2964 2.8455 5.4996 16 6 2.9932 4.5607 5.5242 17 7 3.0337 2.7532 7.1761 18 6 4.2309 3.0336 7.9799 19 6 3.9580 2.6943 9.4226 20 8 2.8732 2.2610 9.7490 21 7 4.9194 2.8723 10.3502 22 6 4.6714 2.5631 11.6626 23 1 3.7054 2.1772 11.9533 24 6 5.6628 2.7461 12.6189 25 7 6.8379 3.2160 12.2653 26 14 5.3246 2.3254 14.4072 27 1 4.9786 0.8857 14.5201 28 1 6.5345 2.6095 15.2199 29 1 4.1914 3.1472 14.9033 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5140 0.8900 35 1 3.0146 4.1939 -1.2978 36 1 2.7806 3.5345 3.2715 37 1 0.7696 2.1650 6.3828 38 1 0.6252 3.5211 5.2393 39 1 0.2053 1.8712 4.7201 40 1 3.1634 4.7983 4.4741 41 1 1.9598 4.7886 5.7854 42 1 3.6640 5.1549 6.1448 43 1 2.7403 1.7942 7.2868 44 1 5.0627 2.4308 7.6154 45 1 4.4846 4.0905 7.8973 46 1 5.7869 3.2192 10.0892 47 1 7.5301 3.3435 12.9328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733967183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:20 Heat of formation + Delta-G solvation = -54.557713 kcal Electronic energy + Delta-G solvation = -28831.356512 eV Core-core repulsion = 24629.799589 eV Total energy + Delta-G solvation = -4201.556924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.86018 -40.03850 -38.43914 -37.33174 -35.29504 -34.69471 -34.25653 -33.73911 -31.32512 -30.95728 -29.62600 -29.03691 -26.55675 -25.40522 -24.45808 -24.03399 -23.29054 -21.85984 -20.74109 -19.74167 -19.30836 -18.59252 -17.88324 -17.25265 -16.69241 -16.43789 -15.88288 -15.56449 -15.43725 -15.15539 -14.89562 -14.76807 -14.42874 -14.09871 -13.96009 -13.81865 -13.64132 -13.16305 -13.01638 -12.79259 -12.51838 -12.19209 -12.15533 -12.00685 -11.77269 -11.75633 -11.65207 -11.56309 -11.40015 -11.15467 -11.05712 -10.87870 -10.67213 -10.43011 -10.28926 -10.19712 -9.48494 -9.44220 -9.15860 -8.44672 -8.09558 -7.94665 -6.40188 -3.80942 0.71391 1.65745 2.12811 2.85573 3.03695 3.21530 3.27017 3.31623 3.62886 3.92515 4.11503 4.15252 4.33802 4.43777 4.60568 4.66737 4.79105 4.87087 4.89002 5.12113 5.16621 5.17958 5.26852 5.35981 5.44550 5.45491 5.59043 5.61795 5.66635 5.69790 5.78037 5.80480 5.84023 5.95530 5.98447 5.99140 6.20555 6.29532 6.38618 6.46138 6.96778 7.18257 7.36045 7.56527 7.62693 7.95388 8.07564 8.62762 9.19306 9.55804 10.07292 10.77490 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.084280 B =15515.827553 C =15937.369965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.048 3.952 4 O -0.199 6.199 5 C 0.174 3.826 6 N -0.463 5.463 7 C -0.077 4.077 8 C 0.602 3.398 9 O -0.532 6.532 10 N -0.704 5.704 11 C 0.141 3.859 12 H 0.089 0.911 13 C -0.157 4.157 14 C 0.077 3.923 15 H 0.048 0.952 16 C -0.145 4.145 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.255 0.745 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 0.069 -29.194 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.085 6.085 5 C -0.054 4.054 6 N -0.192 5.192 7 C -0.196 4.196 8 C 0.388 3.612 9 O -0.409 6.409 10 N -0.357 5.357 11 C 0.037 3.963 12 H 0.107 0.893 13 C -0.215 4.215 14 C -0.034 4.034 15 H 0.066 0.934 16 C -0.203 4.203 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.271 0.729 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.514 0.132 -28.114 29.101 hybrid contribution 1.258 -0.392 -0.167 1.328 sum -6.256 -0.259 -28.281 28.966 Atomic orbital electron populations 1.21707 0.92912 1.03079 1.02469 1.20420 0.97228 0.85298 1.05554 1.23858 0.98158 0.95577 0.83311 1.84387 1.63652 1.24180 1.36322 1.28023 0.99096 0.87106 0.91214 1.70735 1.17102 1.21173 1.10228 1.21511 1.10816 0.91666 0.95640 1.16691 0.77486 0.84517 0.82541 1.90799 1.46878 1.20084 1.83156 1.45960 1.66758 1.17339 1.05644 1.21142 0.96712 0.99457 0.78995 0.89314 1.22128 0.94504 1.02154 1.02735 1.21712 0.96951 0.96061 0.88680 0.93441 1.21887 1.03437 0.94932 1.00005 1.60199 1.33428 1.30695 1.04643 1.21737 0.91213 1.01803 0.93466 1.19779 0.85907 0.85102 0.86546 1.90525 1.24423 1.50249 1.81443 1.41852 1.13671 1.57242 1.07272 1.19654 1.00428 1.40347 0.82450 0.87960 1.25265 0.94957 0.97224 1.00543 1.69603 1.03887 1.45431 1.35441 0.85911 0.77578 0.79116 0.81568 1.19919 1.21009 1.19888 0.90902 0.91696 0.92636 0.89685 0.86350 0.72906 0.75453 0.89835 0.92100 0.92813 0.93069 0.91165 0.92007 0.82848 0.93808 0.89514 0.77473 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.05 -0.36 5.93 -27.89 -0.17 -0.52 16 3 C 0.05 0.44 6.69 -35.08 -0.23 0.20 16 4 O -0.20 -1.54 10.73 6.50 0.07 -1.47 16 5 C 0.17 1.10 13.19 51.96 0.69 1.78 16 6 N -0.46 -4.38 11.06 -11.48 -0.13 -4.51 16 7 C -0.08 -0.82 6.99 -83.02 -0.58 -1.40 16 8 C 0.60 7.36 7.78 -12.52 -0.10 7.27 16 9 O -0.53 -7.47 14.47 5.26 0.08 -7.40 16 10 N -0.70 -7.82 4.99 -54.88 -0.27 -8.09 16 11 C 0.14 1.69 2.30 -67.93 -0.16 1.53 16 12 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 13 C -0.16 -1.92 9.02 37.16 0.33 -1.58 16 14 C 0.08 0.95 2.66 -67.71 -0.18 0.77 16 15 H 0.05 0.58 7.80 -51.93 -0.40 0.18 16 16 C -0.14 -1.61 8.93 37.15 0.33 -1.28 16 17 N -0.66 -10.31 5.14 -107.99 -0.55 -10.86 16 18 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 19 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 20 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 21 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 22 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 23 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 26 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.12 1.05 6.48 -51.93 -0.34 0.71 16 35 H 0.26 0.25 8.06 -52.49 -0.42 -0.17 16 36 H 0.41 4.09 6.30 -40.82 -0.26 3.84 16 37 H 0.08 1.12 7.17 -51.92 -0.37 0.75 16 38 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.47 6.29 -51.93 -0.33 0.14 16 41 H 0.07 0.82 6.56 -51.93 -0.34 0.48 16 42 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 43 H 0.35 5.77 7.62 -39.30 -0.30 5.47 16 44 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 45 H 0.09 1.40 7.44 -51.93 -0.39 1.02 16 46 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -33.60 391.16 -5.87 -39.47 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -6.63 Total: 15.53 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.05 Total: 9.26 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.29 Total: -61.77 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.23 Total: -24.55 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.60 -5.87 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733967183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.086 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds