Wall clock time and date at job start Tue Mar 31 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29937 * 125.37814 * 2 1 4 4 C 1.36065 * 108.47779 * 180.16128 * 3 2 1 5 5 C 1.47416 * 126.44941 * 179.81960 * 4 3 2 6 6 O 1.21616 * 120.00401 * 179.69242 * 5 4 3 7 7 N 1.34776 * 120.00190 * 359.68705 * 5 4 3 8 8 C 1.46496 * 120.00370 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47522 * 325.00542 * 8 7 5 10 10 C 1.53008 * 109.46986 * 85.00485 * 8 7 5 11 11 C 1.52993 * 109.47551 * 205.00187 * 8 7 5 12 12 H 1.09000 * 109.47250 * 300.00222 * 11 8 7 13 13 C 1.52997 * 109.47024 * 60.00263 * 11 8 7 14 14 N 1.46906 * 109.47378 * 180.02562 * 11 8 7 15 15 C 1.46902 * 110.99927 * 154.99917 * 14 11 8 16 16 C 1.50699 * 109.46876 * 179.97438 * 15 14 11 17 17 O 1.21290 * 120.00281 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99745 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99823 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99807 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99893 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00029 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47112 * 60.00202 * 23 21 19 25 25 H 1.48504 * 109.47081 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47441 * 300.00024 * 23 21 19 27 27 C 1.36086 * 107.10118 * 359.56067 * 4 3 2 28 28 C 1.50707 * 126.52825 * 180.24294 * 27 4 3 29 29 O 1.34048 * 125.38044 * 179.66935 * 2 1 3 30 30 H 1.08999 * 109.46930 * 180.35149 * 1 2 3 31 31 H 1.09001 * 109.46929 * 300.35356 * 1 2 3 32 32 H 1.08996 * 109.46913 * 60.35366 * 1 2 3 33 33 H 0.97008 * 119.99907 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47188 * 60.00162 * 10 8 7 35 35 H 1.09002 * 109.47288 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.46630 * 300.00012 * 10 8 7 37 37 H 1.09000 * 109.47140 * 59.99892 * 13 11 8 38 38 H 1.09001 * 109.47375 * 179.97438 * 13 11 8 39 39 H 1.09002 * 109.47045 * 299.99984 * 13 11 8 40 40 H 1.00895 * 110.99792 * 278.95586 * 14 11 8 41 41 H 1.08994 * 109.47343 * 300.00302 * 15 14 11 42 42 H 1.09008 * 109.46954 * 60.00660 * 15 14 11 43 43 H 0.96998 * 120.00132 * 0.02562 * 18 16 15 44 44 H 0.97008 * 119.99988 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.46875 * 89.99502 * 28 27 4 46 46 H 1.08997 * 109.47233 * 209.99620 * 28 27 4 47 47 H 1.09000 * 109.46849 * 329.99828 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 -0.0036 5 6 4.7439 1.5439 -0.0086 6 8 5.8605 1.0619 -0.0059 7 7 4.5879 2.8825 -0.0164 8 6 5.7631 3.7570 -0.0208 9 1 6.5570 3.3020 0.5716 10 6 6.2480 3.9525 -1.4588 11 6 5.3917 5.1138 0.5809 12 1 4.5979 5.5689 -0.0115 13 6 4.9069 4.9184 2.0188 14 7 6.5701 5.9909 0.5759 15 6 6.1736 7.4054 0.5676 16 6 7.4060 8.2725 0.5633 17 8 8.5065 7.7625 0.5663 18 7 7.2854 9.6149 0.5562 19 6 8.4067 10.4039 0.5517 20 1 9.3865 9.9497 0.5544 21 6 8.2823 11.7877 0.5438 22 7 7.0901 12.3403 0.5410 23 14 9.8101 12.8627 0.5384 24 1 10.6183 12.5681 -0.6720 25 1 9.4092 14.2926 0.5294 26 1 10.6172 12.5820 1.7529 27 6 3.5660 -0.6969 0.0041 28 6 4.7802 -1.5897 0.0088 29 8 2.2832 -1.0929 0.0063 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 3.6972 3.2670 -0.0183 34 1 5.4542 4.4077 -2.0512 35 1 7.1228 4.6028 -1.4621 36 1 6.5127 2.9859 -1.8875 37 1 5.7007 4.4632 2.6112 38 1 4.6427 5.8850 2.4477 39 1 4.0324 4.2677 2.0222 40 1 7.1743 5.7893 1.3584 41 1 5.5808 7.6113 -0.3235 42 1 5.5807 7.6217 1.4565 43 1 6.4054 10.0228 0.5541 44 1 7.0033 13.3065 0.5359 45 1 5.0732 -1.7990 1.0377 46 1 4.5456 -2.5249 -0.4995 47 1 5.6000 -1.0908 -0.5081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734000218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:16 Heat of formation + Delta-G solvation = -86.503276 kcal Electronic energy + Delta-G solvation = -28686.141894 eV Core-core repulsion = 24483.199706 eV Total energy + Delta-G solvation = -4202.942187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.51101 -40.94379 -40.14969 -38.45550 -36.10239 -35.99074 -35.39031 -34.05673 -33.26430 -31.97162 -30.92559 -30.60482 -27.99017 -27.30362 -25.84690 -24.99084 -23.86255 -22.53498 -21.73556 -21.35866 -21.02680 -19.90534 -19.08694 -18.13215 -17.73346 -17.43817 -16.87528 -16.64493 -16.37694 -16.01715 -15.91926 -15.47320 -15.30669 -15.20032 -15.00342 -14.65091 -14.50258 -14.33934 -14.23166 -13.95767 -13.59010 -13.52557 -13.52275 -13.38145 -13.19216 -13.18473 -12.98940 -12.72839 -12.59384 -12.42052 -12.34686 -12.25401 -12.12030 -11.89415 -11.69946 -11.49069 -11.22176 -10.37048 -10.24277 -10.00129 -9.77907 -9.30457 -8.45473 -5.93908 -0.00982 0.92600 1.40414 1.42189 1.43366 1.52971 1.94828 2.07368 2.17811 2.30683 2.83821 3.02383 3.21962 3.54501 3.55583 3.59639 3.76322 4.00960 4.13576 4.19040 4.31558 4.32108 4.45217 4.47588 4.54105 4.56038 4.62063 4.66770 4.67704 4.76815 4.78588 4.82963 4.88913 4.94163 5.01052 5.11334 5.18788 5.23989 5.34353 5.42024 5.48045 5.89322 6.09878 6.27164 6.36017 6.56989 6.61742 7.07449 7.14078 7.58084 8.13690 8.71590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001782 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.059819 B =15712.126137 C =16339.238911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.198 3.802 3 N -0.482 5.482 4 C -0.102 4.102 5 C 0.601 3.399 6 O -0.561 6.561 7 N -0.694 5.694 8 C 0.161 3.839 9 H 0.072 0.928 10 C -0.145 4.145 11 C 0.086 3.914 12 H 0.098 0.902 13 C -0.178 4.178 14 N -0.669 5.669 15 C 0.068 3.932 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.039 3.961 28 C -0.075 4.075 29 O -0.199 6.199 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.414 0.586 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.346 0.654 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 -25.958 -0.262 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.011 4.011 3 N -0.213 5.213 4 C -0.221 4.221 5 C 0.388 3.612 6 O -0.440 6.440 7 N -0.345 5.345 8 C 0.057 3.943 9 H 0.090 0.910 10 C -0.203 4.203 11 C -0.025 4.025 12 H 0.117 0.883 13 C -0.236 4.236 14 N -0.301 5.301 15 C -0.064 4.064 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.018 4.018 28 C -0.131 4.131 29 O -0.086 6.086 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.356 -25.804 -0.939 31.112 hybrid contribution 0.039 0.663 0.891 1.112 sum -17.317 -25.141 -0.047 30.528 Atomic orbital electron populations 1.20618 0.77430 1.06744 1.06545 1.27256 0.97999 0.77487 0.98392 1.70689 1.00398 1.31018 1.19174 1.21430 0.92302 0.92828 1.15541 1.16864 0.86234 0.82241 0.75892 1.90779 1.25346 1.75649 1.52255 1.45694 1.10757 1.04775 1.73256 1.20737 0.87082 0.89154 0.97375 0.90985 1.21944 1.02142 1.00925 0.95306 1.21715 0.92387 0.91950 0.96435 0.88344 1.22458 1.02172 1.02574 0.96434 1.59953 1.17003 1.01804 1.51388 1.21547 0.93773 0.87761 1.03304 1.20892 0.91537 0.82896 0.82134 1.90501 1.29817 1.74055 1.56559 1.41917 1.09138 1.04869 1.65134 1.19621 0.88112 0.88671 1.49944 0.90387 1.26018 1.01086 0.97830 0.96349 1.69661 1.23505 1.12559 1.50318 0.85005 0.77530 0.77006 0.78894 1.19836 1.19465 1.19749 1.24130 0.84727 0.94497 0.98439 1.20668 0.88834 0.98112 1.05486 1.84368 1.16122 1.38308 1.69850 0.87116 0.86930 0.86936 0.74922 0.92035 0.91299 0.93891 0.92924 0.91783 0.90833 0.83482 0.87499 0.91270 0.76933 0.91318 0.87952 0.87730 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 71.24 0.75 0.52 16 2 C 0.20 2.93 8.30 88.39 0.73 3.67 16 3 N -0.48 -9.64 11.06 -293.04 -3.24 -12.88 16 4 C -0.10 -2.32 6.99 40.41 0.28 -2.03 16 5 C 0.60 15.38 7.78 86.66 0.67 16.05 16 6 O -0.56 -17.00 14.47 -4.08 -0.06 -17.05 16 7 N -0.69 -15.39 4.38 -445.80 -1.95 -17.34 16 8 C 0.16 3.98 2.34 44.99 0.11 4.08 16 9 H 0.07 2.08 7.58 -2.39 -0.02 2.07 16 10 C -0.14 -3.84 9.33 71.98 0.67 -3.17 16 11 C 0.09 1.96 2.22 44.91 0.10 2.06 16 12 H 0.10 1.99 7.80 -2.39 -0.02 1.97 16 13 C -0.18 -3.60 9.01 71.98 0.65 -2.96 16 14 N -0.67 -20.48 5.11 -495.57 -2.53 -23.01 16 15 C 0.07 2.25 5.97 85.56 0.51 2.76 16 16 C 0.44 20.65 7.82 87.66 0.69 21.33 16 17 O -0.62 -34.55 15.78 -3.06 -0.05 -34.60 16 18 N -0.57 -29.29 5.29 -306.98 -1.62 -30.91 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 23 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.04 0.75 7.44 25.19 0.19 0.93 16 28 C -0.07 -1.06 9.88 71.24 0.70 -0.35 16 29 O -0.20 -3.31 10.73 0.40 0.00 -3.31 16 30 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.41 7.84 8.11 -92.70 -0.75 7.09 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.11 7.60 -2.39 -0.02 2.09 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 38 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 39 H 0.07 1.31 7.44 -2.39 -0.02 1.29 16 40 H 0.35 11.45 8.17 -89.70 -0.73 10.72 16 41 H 0.11 3.14 8.05 -2.39 -0.02 3.12 16 42 H 0.07 1.98 7.44 -2.38 -0.02 1.96 16 43 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 44 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 1.75 6.48 -2.39 -0.02 1.74 16 Total: -1.00 -74.21 398.11 -0.99 -75.21 By element: Atomic # 1 Polarization: 44.69 SS G_CDS: -1.19 Total: 43.51 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 7.33 Total: 24.46 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -9.06 Total: -133.43 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.10 Total: -54.96 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.21 -0.99 -75.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.296 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds