Wall clock time and date at job start Tue Mar 31 2020 20:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29936 * 125.37534 * 2 1 4 4 C 1.36066 * 108.47519 * 179.97438 * 3 2 1 5 5 C 1.47424 * 126.45036 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00423 * 180.02562 * 5 4 3 7 7 N 1.34783 * 119.99622 * 0.03288 * 5 4 3 8 8 C 1.46500 * 119.99845 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47042 * 34.99825 * 8 7 5 10 10 C 1.52996 * 109.46993 * 274.99736 * 8 7 5 11 11 C 1.52997 * 109.47007 * 154.99875 * 8 7 5 12 12 H 1.08993 * 109.47194 * 59.99623 * 11 8 7 13 13 C 1.53006 * 109.47127 * 299.99781 * 11 8 7 14 14 N 1.46902 * 109.47094 * 180.02562 * 11 8 7 15 15 C 1.46904 * 110.99949 * 205.00250 * 14 11 8 16 16 C 1.50702 * 109.47107 * 179.97438 * 15 14 11 17 17 O 1.21292 * 119.99798 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99799 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99562 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00283 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99450 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99430 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00342 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47042 * 89.99697 * 23 21 19 25 25 H 1.48496 * 109.47023 * 210.00378 * 23 21 19 26 26 H 1.48506 * 109.46971 * 330.00183 * 23 21 19 27 27 C 1.36088 * 107.10206 * 0.23149 * 4 3 2 28 28 C 1.50702 * 126.52304 * 179.77285 * 27 4 3 29 29 O 1.34052 * 125.37929 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47312 * 89.99416 * 1 2 3 31 31 H 1.09000 * 109.46894 * 210.00035 * 1 2 3 32 32 H 1.09002 * 109.47311 * 329.99599 * 1 2 3 33 33 H 0.96997 * 119.99708 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.46997 * 179.97438 * 10 8 7 35 35 H 1.08992 * 109.47534 * 299.99735 * 10 8 7 36 36 H 1.08996 * 109.47134 * 60.00540 * 10 8 7 37 37 H 1.09000 * 109.47050 * 180.02562 * 13 11 8 38 38 H 1.09001 * 109.46801 * 300.00272 * 13 11 8 39 39 H 1.09001 * 109.46998 * 59.99868 * 13 11 8 40 40 H 1.00896 * 111.00544 * 81.04158 * 14 11 8 41 41 H 1.09002 * 109.46523 * 299.99312 * 15 14 11 42 42 H 1.08997 * 109.46880 * 59.99279 * 15 14 11 43 43 H 0.96997 * 120.00155 * 0.02562 * 18 16 15 44 44 H 0.97005 * 119.99239 * 180.02562 * 22 21 19 45 45 H 1.09010 * 109.47285 * 89.99955 * 28 27 4 46 46 H 1.09001 * 109.47296 * 209.99698 * 28 27 4 47 47 H 1.08999 * 109.47521 * 330.00033 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6639 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8604 1.0620 0.0004 7 7 4.5878 2.8827 0.0000 8 6 5.7631 3.7572 0.0002 9 1 6.5573 3.2986 -0.5889 10 6 6.2468 3.9611 1.4373 11 6 5.3920 5.1104 -0.6098 12 1 4.5978 5.5689 -0.0208 13 6 4.9084 4.9065 -2.0470 14 7 6.5707 5.9871 -0.6101 15 6 6.1746 7.4017 -0.6105 16 6 7.4074 8.2686 -0.6102 17 8 8.5077 7.7581 -0.6092 18 7 7.2872 9.6109 -0.6109 19 6 8.4087 10.3995 -0.6101 20 1 9.3884 9.9450 -0.6093 21 6 8.2848 11.7835 -0.6104 22 7 9.3598 12.5393 -0.6101 23 14 6.5903 12.5696 -0.6111 24 1 6.1407 12.7780 0.7888 25 1 6.6517 13.8776 -1.3114 26 1 5.6312 11.6778 -1.3113 27 6 3.5659 -0.6970 -0.0043 28 6 4.7802 -1.5896 -0.0105 29 8 2.2831 -1.0930 0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 3.6972 3.2670 -0.0004 34 1 7.1215 4.6114 1.4375 35 1 5.4526 4.4197 2.0264 36 1 6.5112 2.9971 1.8719 37 1 4.6444 5.8706 -2.4817 38 1 5.7026 4.4479 -2.6360 39 1 4.0339 4.2557 -2.0472 40 1 7.1749 5.7805 -1.3914 41 1 5.5819 7.6127 -1.5006 42 1 5.5818 7.6132 0.2794 43 1 6.4073 10.0191 -0.6113 44 1 9.2732 13.5055 -0.6099 45 1 5.0754 -1.8085 1.0158 46 1 4.5445 -2.5200 -0.5270 47 1 5.5988 -1.0859 -0.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734000221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:20 Heat of formation + Delta-G solvation = -81.755532 kcal Electronic energy + Delta-G solvation = -28751.074274 eV Core-core repulsion = 24548.337965 eV Total energy + Delta-G solvation = -4202.736309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.51164 -40.95118 -40.28126 -38.47923 -36.12286 -36.00603 -35.41523 -34.05802 -33.73576 -32.01111 -30.93209 -30.61187 -28.10971 -27.30530 -25.67677 -24.97215 -23.84284 -22.53039 -21.73067 -21.36171 -21.23111 -20.26912 -19.08124 -18.13524 -17.70099 -17.46919 -16.93087 -16.73111 -16.48552 -16.01971 -15.78205 -15.39727 -15.32159 -15.07587 -14.98396 -14.69364 -14.52252 -14.35537 -14.29424 -14.24154 -13.88766 -13.57222 -13.51968 -13.44017 -13.21111 -13.17578 -13.03429 -12.74051 -12.58335 -12.39855 -12.35156 -12.24373 -11.97108 -11.89949 -11.69194 -11.49880 -11.22874 -10.44535 -10.25873 -10.23303 -9.77857 -9.30497 -8.39963 -6.00838 -0.01189 0.92697 1.31016 1.37190 1.43041 1.45751 1.94600 1.98094 2.17836 2.24408 2.75649 2.90837 3.16452 3.44994 3.55085 3.60154 3.76627 4.00307 4.14356 4.16588 4.20960 4.31139 4.43841 4.46013 4.53981 4.54789 4.59533 4.66633 4.67119 4.77666 4.78142 4.83412 4.88986 4.94683 5.01539 5.11274 5.20512 5.24319 5.34830 5.47894 5.54776 5.91602 6.04489 6.27169 6.34167 6.57213 6.61159 6.89848 7.08024 7.41543 7.98706 8.77741 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.001892 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.322906 B =14795.687569 C =15579.824113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.198 3.802 3 N -0.481 5.481 4 C -0.102 4.102 5 C 0.601 3.399 6 O -0.562 6.562 7 N -0.693 5.693 8 C 0.160 3.840 9 H 0.070 0.930 10 C -0.145 4.145 11 C 0.087 3.913 12 H 0.104 0.896 13 C -0.178 4.178 14 N -0.674 5.674 15 C 0.065 3.935 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.229 1.229 27 C 0.039 3.961 28 C -0.075 4.075 29 O -0.199 6.199 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.415 0.585 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.346 0.654 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.877 -26.876 0.358 38.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.012 4.012 3 N -0.211 5.211 4 C -0.221 4.221 5 C 0.387 3.613 6 O -0.441 6.441 7 N -0.344 5.344 8 C 0.055 3.945 9 H 0.088 0.912 10 C -0.204 4.204 11 C -0.024 4.024 12 H 0.122 0.878 13 C -0.237 4.237 14 N -0.306 5.306 15 C -0.067 4.067 16 C 0.236 3.764 17 O -0.498 6.498 18 N -0.233 5.233 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.152 1.152 27 C -0.018 4.018 28 C -0.131 4.131 29 O -0.087 6.087 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.383 -26.738 1.039 36.882 hybrid contribution -0.314 0.598 -0.879 1.109 sum -25.697 -26.139 0.160 36.655 Atomic orbital electron populations 1.20624 0.77430 1.06854 1.06478 1.27256 0.98002 0.77491 0.98409 1.70705 1.00339 1.30952 1.19127 1.21432 0.92340 0.92806 1.15506 1.16868 0.86194 0.82303 0.75895 1.90781 1.25407 1.75683 1.52230 1.45679 1.10776 1.04709 1.73264 1.20751 0.87059 0.89340 0.97326 0.91201 1.21943 1.02190 1.00867 0.95360 1.21718 0.92351 0.91833 0.96471 0.87816 1.22472 1.02116 1.02744 0.96396 1.59936 1.17143 1.01854 1.51686 1.21657 0.93271 0.87566 1.04238 1.21011 0.91783 0.82537 0.81028 1.90558 1.30340 1.73932 1.55006 1.42018 1.07671 1.05714 1.67887 1.19001 0.87331 0.89125 1.50274 0.92798 1.26152 1.03426 0.95895 0.96127 1.69816 1.31449 1.05949 1.50394 0.85344 0.77283 0.78813 0.79936 1.18167 1.20161 1.15237 1.24123 0.84706 0.94523 0.98467 1.20665 0.88872 0.98137 1.05464 1.84361 1.16122 1.38321 1.69890 0.86952 0.87132 0.86860 0.74846 0.91343 0.91805 0.94110 0.91393 0.93149 0.90867 0.83463 0.90237 0.86422 0.77430 0.91202 0.88008 0.87745 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.24 0.75 0.56 16 2 C 0.20 2.77 8.30 88.39 0.73 3.50 16 3 N -0.48 -9.11 11.06 -293.03 -3.24 -12.35 16 4 C -0.10 -2.23 6.99 40.41 0.28 -1.94 16 5 C 0.60 14.83 7.78 86.66 0.67 15.51 16 6 O -0.56 -16.70 14.47 -4.05 -0.06 -16.76 16 7 N -0.69 -14.41 4.38 -445.80 -1.95 -16.36 16 8 C 0.16 3.71 2.34 44.99 0.11 3.82 16 9 H 0.07 1.95 7.58 -2.38 -0.02 1.94 16 10 C -0.15 -3.67 9.33 71.98 0.67 -3.00 16 11 C 0.09 1.77 2.22 44.92 0.10 1.87 16 12 H 0.10 1.74 7.80 -2.39 -0.02 1.72 16 13 C -0.18 -3.20 9.00 71.98 0.65 -2.55 16 14 N -0.67 -19.00 5.11 -495.56 -2.53 -21.53 16 15 C 0.06 1.87 5.97 85.56 0.51 2.38 16 16 C 0.45 19.93 7.82 87.66 0.69 20.61 16 17 O -0.61 -34.00 15.78 -3.07 -0.05 -34.04 16 18 N -0.59 -27.56 5.09 -306.98 -1.56 -29.12 16 19 C -0.33 -19.25 10.16 84.04 0.85 -18.40 16 20 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 21 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 22 N -0.94 -56.68 13.96 21.66 0.30 -56.37 16 23 Si 0.97 38.54 27.74 68.60 1.90 40.44 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 27 C 0.04 0.72 7.44 25.19 0.19 0.91 16 28 C -0.08 -1.04 9.88 71.24 0.70 -0.33 16 29 O -0.20 -3.20 10.73 0.39 0.00 -3.19 16 30 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.41 7.13 8.12 -92.71 -0.75 6.38 16 34 H 0.07 2.02 7.61 -2.39 -0.02 2.00 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.13 7.45 -2.39 -0.02 1.11 16 38 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.07 1.15 7.45 -2.39 -0.02 1.13 16 40 H 0.35 10.81 8.17 -89.70 -0.73 10.07 16 41 H 0.08 1.83 7.43 -2.39 -0.02 1.82 16 42 H 0.12 2.79 8.06 -2.39 -0.02 2.77 16 43 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 44 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.10 1.71 6.48 -2.39 -0.02 1.70 16 Total: -1.00 -83.20 394.99 -0.86 -84.06 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -1.05 Total: 42.81 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 7.37 Total: 22.43 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -8.98 Total: -135.74 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -0.10 Total: -54.00 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.44 kcal Total: -83.20 -0.86 -84.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds