Wall clock time and date at job start Tue Mar 31 2020 20:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29938 * 125.37492 * 2 1 4 4 C 1.36077 * 108.47250 * 180.16275 * 3 2 1 5 5 C 1.47414 * 126.44376 * 179.82415 * 4 3 2 6 6 O 1.21614 * 119.99843 * 179.68843 * 5 4 3 7 7 N 1.34777 * 120.00265 * 359.68345 * 5 4 3 8 8 C 1.46501 * 119.99721 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47545 * 325.00458 * 8 7 5 10 10 C 1.53008 * 109.46870 * 85.00692 * 8 7 5 11 11 C 1.52993 * 109.47146 * 204.99997 * 8 7 5 12 12 H 1.09006 * 109.47344 * 65.00556 * 11 8 7 13 13 C 1.53006 * 109.47453 * 305.00540 * 11 8 7 14 14 N 1.46905 * 109.47335 * 185.00344 * 11 8 7 15 15 C 1.46902 * 110.99800 * 205.00067 * 14 11 8 16 16 C 1.50706 * 109.46577 * 180.02562 * 15 14 11 17 17 O 1.21288 * 120.00224 * 359.72334 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00025 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99595 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00115 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99938 * 23 21 19 27 27 C 1.36091 * 107.10174 * 359.55848 * 4 3 2 28 28 C 1.50696 * 126.52189 * 180.24394 * 27 4 3 29 29 O 1.34054 * 125.38115 * 179.66705 * 2 1 3 30 30 H 1.09005 * 109.47229 * 180.34876 * 1 2 3 31 31 H 1.08994 * 109.47615 * 300.35337 * 1 2 3 32 32 H 1.08999 * 109.46814 * 60.35623 * 1 2 3 33 33 H 0.96995 * 120.00199 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.47228 * 59.99572 * 10 8 7 35 35 H 1.08997 * 109.47184 * 179.97438 * 10 8 7 36 36 H 1.09006 * 109.46695 * 299.99376 * 10 8 7 37 37 H 1.09002 * 109.47182 * 179.97438 * 13 11 8 38 38 H 1.08998 * 109.47049 * 300.00015 * 13 11 8 39 39 H 1.09001 * 109.47090 * 59.99711 * 13 11 8 40 40 H 1.00891 * 110.99988 * 328.95482 * 14 11 8 41 41 H 1.09000 * 109.47263 * 60.00269 * 15 14 11 42 42 H 1.09001 * 109.47582 * 299.99548 * 15 14 11 43 43 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.47228 * 90.00189 * 28 27 4 46 46 H 1.08998 * 109.47120 * 209.99883 * 28 27 4 47 47 H 1.08994 * 109.47097 * 329.99896 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 -0.0037 5 6 4.7438 1.5439 -0.0086 6 8 5.8604 1.0619 -0.0058 7 7 4.5877 2.8826 -0.0163 8 6 5.7631 3.7570 -0.0206 9 1 6.5568 3.3019 0.5718 10 6 6.2480 3.9526 -1.4586 11 6 5.3916 5.1137 0.5811 12 1 5.1311 4.9862 1.6319 13 6 4.1950 5.6962 -0.1739 14 7 6.5348 6.0293 0.4678 15 6 6.4751 7.0759 1.4969 16 6 7.6609 7.9941 1.3489 17 8 8.4783 7.7931 0.4756 18 7 7.8159 9.0356 2.1902 19 6 8.8949 9.8705 2.0559 20 1 9.6205 9.6940 1.2757 21 6 9.0550 10.9440 2.9236 22 7 8.1723 11.1586 3.8732 23 14 10.5248 12.0822 2.7402 24 1 10.1766 13.1963 1.8223 25 1 10.8936 12.6325 4.0693 26 1 11.6728 11.3223 2.1833 27 6 3.5660 -0.6970 0.0041 28 6 4.7801 -1.5896 0.0088 29 8 2.2832 -1.0929 0.0064 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 3.6972 3.2670 -0.0182 34 1 5.4542 4.4077 -2.0510 35 1 7.1222 4.6035 -1.4619 36 1 6.5127 2.9859 -1.8873 37 1 3.9301 6.6625 0.2551 38 1 4.4555 5.8238 -1.2246 39 1 3.3467 5.0168 -0.0898 40 1 7.4076 5.5254 0.5148 41 1 6.4926 6.6156 2.4848 42 1 5.5554 7.6491 1.3794 43 1 7.1644 9.1939 2.8911 44 1 8.2838 11.9082 4.4787 45 1 5.0732 -1.7990 1.0377 46 1 4.5456 -2.5248 -0.4996 47 1 5.5998 -1.0907 -0.5081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734000224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:26 Heat of formation + Delta-G solvation = -54.761847 kcal Electronic energy + Delta-G solvation = -28696.810575 eV Core-core repulsion = 24495.244800 eV Total energy + Delta-G solvation = -4201.565775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.83375 -40.03022 -38.43481 -37.31645 -35.32137 -34.44499 -33.76002 -33.45293 -31.32012 -30.95887 -30.42822 -29.12957 -26.75522 -26.50379 -24.70362 -24.03866 -23.07070 -21.77638 -20.64581 -19.71077 -19.29376 -18.35810 -17.87326 -17.45664 -16.47268 -16.22841 -15.84552 -15.52894 -15.14100 -14.93043 -14.65749 -14.47568 -14.34581 -13.98858 -13.92309 -13.75350 -13.65862 -13.22436 -13.17276 -13.07475 -12.79024 -12.73516 -12.50198 -12.17953 -12.00488 -11.76610 -11.62194 -11.57077 -11.40196 -11.17660 -11.07762 -10.88644 -10.66678 -10.38093 -10.29029 -10.20114 -9.49351 -9.33981 -9.05289 -8.44523 -8.09307 -7.94522 -6.40211 -3.80919 0.72558 1.62567 2.05792 2.84408 3.04582 3.19312 3.27787 3.33825 3.47337 3.92641 4.11636 4.19949 4.33459 4.43736 4.62529 4.64070 4.86279 4.88722 4.91162 4.98722 5.08844 5.16020 5.17923 5.21962 5.27002 5.45197 5.47565 5.59729 5.63640 5.65375 5.71109 5.80018 5.83586 5.96123 5.98838 5.99559 6.21042 6.29818 6.39374 6.46646 7.02087 7.18825 7.37782 7.56793 7.63098 7.96333 8.07892 8.62820 9.19464 9.55945 10.07357 10.77539 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.001785 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.128770 B =15682.169562 C =16143.576532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.460 5.460 4 C -0.076 4.076 5 C 0.603 3.397 6 O -0.534 6.534 7 N -0.704 5.704 8 C 0.141 3.859 9 H 0.089 0.911 10 C -0.157 4.157 11 C 0.077 3.923 12 H 0.048 0.952 13 C -0.145 4.145 14 N -0.656 5.656 15 C 0.050 3.950 16 C 0.442 3.558 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.041 3.959 28 C -0.077 4.077 29 O -0.198 6.198 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.408 0.592 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.351 0.649 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.561 -24.365 -5.725 30.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.190 5.190 4 C -0.196 4.196 5 C 0.389 3.611 6 O -0.411 6.411 7 N -0.357 5.357 8 C 0.037 3.963 9 H 0.107 0.893 10 C -0.215 4.215 11 C -0.034 4.034 12 H 0.066 0.934 13 C -0.203 4.203 14 N -0.290 5.290 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.016 4.016 28 C -0.133 4.133 29 O -0.085 6.085 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.172 0.828 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.720 -23.666 -6.636 29.727 hybrid contribution 0.139 -0.149 1.320 1.335 sum -16.581 -23.815 -5.316 29.502 Atomic orbital electron populations 1.20309 0.80764 1.04944 1.05402 1.26224 0.96503 0.78216 1.00706 1.70716 1.00685 1.29998 1.17602 1.21493 0.92159 0.92301 1.13630 1.16677 0.86135 0.81943 0.76353 1.90794 1.24197 1.75209 1.50935 1.45954 1.10832 1.05091 1.73787 1.21147 0.87515 0.89104 0.98564 0.89315 1.22130 1.02673 1.01864 0.94859 1.21713 0.93198 0.90457 0.98031 0.93440 1.21888 0.95720 1.00744 1.01900 1.60199 1.04700 1.14056 1.50019 1.21739 0.99422 0.94170 0.92900 1.19783 0.88266 0.84179 0.85068 1.90524 1.45664 1.74268 1.36160 1.41859 1.24427 1.24524 1.29273 1.19707 1.02254 1.05722 1.15128 0.87901 1.25266 0.98843 0.98221 0.95674 1.69616 1.35695 1.30877 1.18173 0.85853 0.81067 0.79931 0.77410 1.20404 1.20966 1.19427 1.23751 0.83861 0.94546 0.99414 1.20617 0.90192 0.97707 1.04803 1.84336 1.16407 1.37990 1.69794 0.89212 0.88214 0.88223 0.75438 0.92089 0.89827 0.92815 0.92006 0.91157 0.93074 0.82840 0.93800 0.89509 0.77476 0.91902 0.88922 0.90123 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.18 16 2 C 0.19 1.60 8.30 -13.08 -0.11 1.49 16 3 N -0.46 -4.87 11.06 -7.65 -0.08 -4.96 16 4 C -0.08 -0.88 6.99 -83.02 -0.58 -1.46 16 5 C 0.60 7.68 7.78 -12.52 -0.10 7.58 16 6 O -0.53 -7.77 14.47 5.27 0.08 -7.70 16 7 N -0.70 -8.07 4.99 -54.88 -0.27 -8.34 16 8 C 0.14 1.72 2.30 -67.93 -0.16 1.56 16 9 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 10 C -0.16 -1.95 9.02 37.16 0.34 -1.62 16 11 C 0.08 0.96 2.66 -67.71 -0.18 0.78 16 12 H 0.05 0.59 7.80 -51.93 -0.40 0.18 16 13 C -0.14 -1.63 8.93 37.16 0.33 -1.30 16 14 N -0.66 -10.39 5.14 -107.98 -0.55 -10.94 16 15 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 16 C 0.44 10.44 7.82 -10.98 -0.09 10.35 16 17 O -0.58 -15.79 15.78 5.55 0.09 -15.71 16 18 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.04 0.40 7.44 -35.08 -0.26 0.14 16 28 C -0.08 -0.56 9.88 36.00 0.36 -0.21 16 29 O -0.20 -1.80 10.73 6.52 0.07 -1.73 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.41 4.24 6.30 -40.82 -0.26 3.98 16 34 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 35 H 0.08 1.13 7.17 -51.93 -0.37 0.76 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.72 7.45 -51.93 -0.39 0.34 16 38 H 0.07 0.83 6.56 -51.93 -0.34 0.49 16 39 H 0.05 0.47 6.29 -51.93 -0.33 0.15 16 40 H 0.35 5.82 7.61 -39.30 -0.30 5.52 16 41 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.09 1.41 7.44 -51.93 -0.39 1.02 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.11 0.98 6.48 -51.93 -0.34 0.64 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -33.89 391.66 -6.11 -39.99 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -6.63 Total: 15.35 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -0.34 Total: 10.32 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.25 Total: -62.63 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.23 Total: -25.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.89 -6.11 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.769 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds